FvH4_5g27680

Glycerol-3-phosphate acyltransferase 3-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
18880417 .. 18888508
8092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27680.t1

Sequence Viewer

Length: 1122 bp
ATGAACCAGCTGAAAAGGTCAAGCTCGGAATTGGACCCGGACCGGCCCAACCTCGAGGACTACCTCCCTTCCGGAGCCTCCATCCAAGCCGAACCTCACGGCAAACTTCGCCTCCGTGATTTGCTTGACATCTCTCCCTCCCTCGCCGAGGCCGCCGGCGCCATTATCGATGACTCATTCACTCGGTGCTTCAAGTCGAATCCTCCGGAGCCCTGGAATTGGAATGTGTATTTGTTCCCTTTGTGGTGTCTCGGAGTCGTCGTTCGTTACTTTGTTCTCTTTCCCACTAGGGTACTGGTCCTGACAATCGGATGGATCATTTTCCTTTCGGCATTCATACCTGTGCACTTCCTACTCAAAGGCCATGACAAGTTGAGAAAATATTTAGAGAGATGTTTGGTGGAGTTAATTTGTAGCTTCTTTGTTGCATCCTGGACTGGGGTTGTGAAGTACCATGGGCCACGGCCTAGTATCCGACCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCTAGAACAAATGACAGCATTTGCTGTTATCATGCAAAAGCATCCTGGATGGGTTGGATTGTTGCAAAAAATTATTTTGGAGAGTGTGGGATGTATCTGGTTCAATCGTACAGAAGCAAAGGATCGGGAAATTGTTGCAAAGAAATTAAGGGATCATGTGGTGGGGCCTGACAATAACCCTCTCCTTATATTTCCCGAGGGAACATGTGTAAACAATCACTACACTGTCATGTTTAAGAAGGGTGCATTTGAGCTTGGCTGCTCAGTTTGCCCTGTTGCAATCAAGTATAATAAAATTTTCATTGATGCATTCTGGAACAGCAGAAAGCAGTCCTTCACAATGCATCTCCTACAGCTTATGACATCTTGGGCTGTTGTTTGTGATGTGGGGTATTTGGAGCCTGAAAATATTAAGCCCGGGGAGACTGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTGTTCGAGCTGGACTTAAGACGGTTCCCTGGGATGGATATCTGAAATACTCCCGCCCTAGCCCAAAGCACAGAGAGCGAAAACAACAAAGCTTCGCCGAGTCTATGCTCCAACGCCTAGAGGAGAAATGA

Protein Analysis

374

Amino Acids

42.83

Weight (kDa)

8.95

Isoelectric Point (pI)

40.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 149 - 271 8e-25 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 475
AccB1I GGYRCC 1 cut(s) 158
AccIII TCCGGA 2 cut(s) 71, 205
AciI CCGC 2 cut(s) 153, 1045
AclWI GGATC 3 cut(s) 323, 657, 687
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 2 cut(s) 822, 962
AcyI GRCGYC 1 cut(s) 159
AdeI CACNNNGTG 1 cut(s) 186
AfaI GTAC 3 cut(s) 294, 452, 637
AfiI CCNNNNNNNGG 4 cut(s) 148, 219, 438, 1025
AflII CTTAAG 1 cut(s) 1007
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 3 cut(s) 193, 631, 962
AjnI CCWGG 4 cut(s) 212, 431, 571, 1019
AloI GAACNNNNNNTCC 2 cut(s) 246, 278
AluBI AGCT 7 cut(s) 10, 24, 417, 781, 883, 1001, 1083
AluI AGCT 7 cut(s) 10, 24, 417, 781, 883, 1001, 1083
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 254, 944
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 3 cut(s) 323, 657, 687
Ama87I CYCGRG 3 cut(s) 53, 722, 944
Aor13HI TCCGGA 2 cut(s) 71, 205
AoxI GGCC 7 cut(s) 44, 150, 361, 458, 464, 495, 692
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 1 cut(s) 786
ApoI RAATTY 2 cut(s) 822, 962
AspLEI GCGC 1 cut(s) 161
AspS9I GGNCC 6 cut(s) 34, 40, 45, 298, 458, 692
AsuC2I CCSGG 3 cut(s) 38, 945, 946
AvaI CYCGRG 3 cut(s) 53, 722, 944
AvaII GGWCC 3 cut(s) 34, 40, 298
BaeGI GKGCMC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 497
BanI GGYRCC 1 cut(s) 158
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 773
BccI CCATC 4 cut(s) 89, 306, 570, 1019
BceAI ACGGC 2 cut(s) 115, 479
BciT130I CCWGG 4 cut(s) 214, 433, 573, 1021
BciVI GTATCC 1 cut(s) 482
BcnI CCSGG 3 cut(s) 38, 945, 946
BcoDI GTCTC 2 cut(s) 254, 944
BfaI CTAG 5 cut(s) 288, 468, 530, 1050, 1109
BfmI CTRYAG 1 cut(s) 878
BfoI RGCGCY 1 cut(s) 162
BfrI CTTAAG 1 cut(s) 1007
BfuAI ACCTGC 1 cut(s) 475
BfuI GTATCC 1 cut(s) 482
BisI GCNGC 2 cut(s) 153, 787
BlsI GCNGC 2 cut(s) 154, 788
Bme1390I CCNGG 7 cut(s) 38, 214, 433, 573, 945, 946, 1021
Bme18I GGWCC 3 cut(s) 34, 40, 298
BmeT110I CYCGRG 3 cut(s) 53, 722, 944
BmgT120I GGNCC 6 cut(s) 34, 40, 45, 298, 458, 692
BmiI GGNNCC 7 cut(s) 36, 76, 160, 210, 693, 927, 1017
BmrFI CCNGG 7 cut(s) 38, 214, 433, 573, 945, 946, 1021
BmrI ACTGGG 1 cut(s) 447
BmsI GCATC 4 cut(s) 437, 577, 823, 880
BmuI ACTGGG 1 cut(s) 447
BpuMI CCSGG 3 cut(s) 38, 945, 946
Bsa29I ATCGAT 1 cut(s) 168
BsaBI GATNNNNATC 1 cut(s) 1029
BsaHI GRCGYC 1 cut(s) 159
BsaJI CCNNGG 9 cut(s) 147, 212, 454, 461, 723, 944, 945, 1019, 1020
BsaWI WCCGGW 2 cut(s) 71, 205
BsaXI ACNNNNNCTCC 4 cut(s) 96, 126, 246, 276
Bsc4I CCNNNNNNNGG 4 cut(s) 148, 219, 438, 1025
Bse118I RCCGGY 2 cut(s) 42, 155
Bse1I ACTGG 2 cut(s) 300, 442
Bse8I GATNNNNATC 1 cut(s) 1029
BseAI TCCGGA 2 cut(s) 71, 205
BseBI CCWGG 4 cut(s) 214, 433, 573, 1021
BseCI ATCGAT 1 cut(s) 168
BseDI CCNNGG 9 cut(s) 147, 212, 454, 461, 723, 944, 945, 1019, 1020
BseGI GGATG 8 cut(s) 81, 317, 428, 525, 568, 581, 623, 1030
BseJI GATNNNNATC 1 cut(s) 1029
BseLI CCNNNNNNNGG 4 cut(s) 148, 219, 438, 1025
BseMII CTCAG 1 cut(s) 804
BseNI ACTGG 2 cut(s) 300, 442
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 1 cut(s) 773
BshFI GGCC 7 cut(s) 46, 152, 363, 460, 466, 497, 694
BshNI GGYRCC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 168
BsiHKAI GWGCWC 1 cut(s) 348
BsiHKCI CYCGRG 3 cut(s) 53, 722, 944
BsiSI CCGG 6 cut(s) 38, 43, 72, 156, 206, 945
BslFI GGGAC 1 cut(s) 995
BslI CCNNNNNNNGG 4 cut(s) 148, 219, 438, 1025
BsmAI GTCTC 2 cut(s) 254, 944
BsmFI GGGAC 1 cut(s) 995
BsmI GAATGC 2 cut(s) 332, 836
BsnI GGCC 7 cut(s) 46, 152, 363, 460, 466, 497, 694
BsoBI CYCGRG 3 cut(s) 53, 722, 944
Bsp1286I GDGCHC 2 cut(s) 213, 348
Bsp13I TCCGGA 2 cut(s) 71, 205
Bsp143I GATC 3 cut(s) 315, 649, 679
Bsp19I CCATGG 1 cut(s) 454
BspACI CCGC 2 cut(s) 153, 1045
BspANI GGCC 7 cut(s) 46, 152, 363, 460, 466, 497, 694
BspCNI CTCAG 1 cut(s) 803
BspDI ATCGAT 1 cut(s) 168
BspEI TCCGGA 2 cut(s) 71, 205
BspLI GGNNCC 7 cut(s) 36, 76, 160, 210, 693, 927, 1017
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 3 cut(s) 323, 657, 687
BspT107I GGYRCC 1 cut(s) 158
BspTI CTTAAG 1 cut(s) 1007
BsrFI RCCGGY 2 cut(s) 42, 155
BsrI ACTGG 2 cut(s) 300, 442
BssAI RCCGGY 2 cut(s) 42, 155
BssECI CCNNGG 9 cut(s) 147, 212, 454, 461, 723, 944, 945, 1019, 1020
BssMI GATC 3 cut(s) 315, 649, 679
BssNI GRCGYC 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 4 cut(s) 214, 433, 573, 1021
Bst4CI ACNGT 2 cut(s) 754, 1015
BstACI GRCGYC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 1007
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 790
BstDSI CCRYGG 2 cut(s) 454, 461
BstENI CCTNNNNNAGG 1 cut(s) 146
BstF5I GGATG 8 cut(s) 81, 317, 428, 525, 568, 581, 623, 1030
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 1 cut(s) 161
BstKTI GATC 3 cut(s) 318, 652, 682
BstMAI GTCTC 2 cut(s) 254, 944
BstMBI GATC 3 cut(s) 315, 649, 679
BstMWI GCNNNNNNNGC 5 cut(s) 108, 152, 158, 795, 1066
BstNI CCWGG 4 cut(s) 214, 433, 573, 1021
BstNSI RCATGY 1 cut(s) 735
BstSCI CCNGG 7 cut(s) 36, 212, 431, 571, 943, 944, 1019
BstSFI CTRYAG 1 cut(s) 878
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 1 cut(s) 773
Bsu15I ATCGAT 1 cut(s) 168
BsuI GTATCC 1 cut(s) 482
BsuRI GGCC 7 cut(s) 46, 152, 363, 460, 466, 497, 694
BsuTUI ATCGAT 1 cut(s) 168
BtgI CCRYGG 2 cut(s) 454, 461
BtsCI GGATG 8 cut(s) 81, 317, 428, 525, 568, 581, 623, 1030
BtsIMutI CAGTG 1 cut(s) 750
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 161
Cfr10I RCCGGY 2 cut(s) 42, 155
Cfr13I GGNCC 6 cut(s) 34, 40, 45, 298, 458, 692
Cfr9I CCCGGG 1 cut(s) 944
ClaI ATCGAT 1 cut(s) 168
CpoI CGGWCCG 1 cut(s) 40
Csp6I GTAC 3 cut(s) 293, 451, 636
CspI CGGWCCG 1 cut(s) 40
CviAII CATG 6 cut(s) 365, 455, 559, 683, 732, 757
CviQI GTAC 3 cut(s) 293, 451, 636
DdeI CTNAG 1 cut(s) 790
DinI GGCGCC 1 cut(s) 160
DpnI GATC 3 cut(s) 317, 651, 681
DpnII GATC 3 cut(s) 315, 649, 679
DraIII CACNNNGTG 1 cut(s) 186
EaeI YGGCCR 1 cut(s) 495
Eco130I CCWWGG 1 cut(s) 454
Eco24I GRGCYC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 1031
Eco47I GGWCC 3 cut(s) 34, 40, 298
Eco88I CYCGRG 3 cut(s) 53, 722, 944
EcoNI CCTNNNNNAGG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 692
EcoRII CCWGG 4 cut(s) 212, 431, 571, 1019
EcoRV GATATC 1 cut(s) 1031
EcoT14I CCWWGG 1 cut(s) 454
EcoT22I ATGCAT 2 cut(s) 838, 873
EcoT38I GRGCYC 1 cut(s) 213
EgeI GGCGCC 1 cut(s) 160
EheI GGCGCC 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 6 cut(s) 368, 458, 562, 686, 735, 760
FalI AAGNNNNNCTT 2 cut(s) 845, 877
FaqI GGGAC 1 cut(s) 995
FatI CATG 6 cut(s) 364, 454, 558, 682, 731, 756
FauI CCCGC 1 cut(s) 1052
Fnu4HI GCNGC 2 cut(s) 153, 787
FokI GGATG 8 cut(s) 68, 324, 415, 512, 555, 588, 630, 1037
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 2 cut(s) 153, 787
FspBI CTAG 5 cut(s) 288, 468, 530, 1050, 1109
GlaI GCGC 1 cut(s) 160
GluI GCNGC 2 cut(s) 153, 787
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 7 cut(s) 46, 152, 363, 460, 466, 497, 694
HapII CCGG 6 cut(s) 38, 43, 72, 156, 206, 945
HhaI GCGC 1 cut(s) 161
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 6 cut(s) 368, 458, 562, 686, 735, 760
Hin6I GCGC 1 cut(s) 159
HinP1I GCGC 1 cut(s) 159
HindIII AAGCTT 1 cut(s) 1081
HinfI GANTC 4 cut(s) 173, 199, 255, 1091
HpaII CCGG 6 cut(s) 38, 43, 72, 156, 206, 945
Hpy166II GTNNAC 2 cut(s) 346, 739
Hpy188I TCNGA 5 cut(s) 28, 254, 311, 476, 1035
Hpy188III TCNNGA 6 cut(s) 72, 206, 301, 653, 722, 841
Hpy8I GTNNAC 2 cut(s) 346, 739
Hpy99I CGWCG 1 cut(s) 263
HpyAV CCTTC 3 cut(s) 78, 760, 871
HpyCH4III ACNGT 2 cut(s) 754, 1015
HpyF10VI GCNNNNNNNGC 5 cut(s) 108, 152, 158, 795, 1066
HpyF3I CTNAG 1 cut(s) 790
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 6 cut(s) 368, 458, 562, 686, 735, 760
HspAI GCGC 1 cut(s) 159
KasI GGCGCC 1 cut(s) 158
Kpn2I TCCGGA 2 cut(s) 71, 205
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 3 cut(s) 315, 649, 679
LmnI GCTCC 4 cut(s) 74, 208, 925, 1104
Lsp1109I GCAGC 1 cut(s) 773
LweI GCATC 4 cut(s) 437, 577, 823, 880
MaeI CTAG 5 cut(s) 288, 468, 530, 1050, 1109
MaeIII GTNAC 1 cut(s) 266
MalI GATC 3 cut(s) 317, 651, 681
MboI GATC 3 cut(s) 315, 649, 679
MhlI GDGCHC 2 cut(s) 213, 348
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 9 cut(s) 29, 217, 408, 597, 657, 671, 822, 962, 987
MluNI TGGCCA 1 cut(s) 497
Mly113I GGCGCC 1 cut(s) 159
MlyI GAGTC 3 cut(s) 167, 264, 1100
MmeI TCCRAC 2 cut(s) 499, 562
Mox20I TGGCCA 1 cut(s) 497
Mph1103I ATGCAT 2 cut(s) 838, 873
MreI CGCCGGCG 1 cut(s) 155
MroI TCCGGA 2 cut(s) 71, 205
MroNI GCCGGC 1 cut(s) 155
MscI TGGCCA 1 cut(s) 497
MseI TTAA 5 cut(s) 407, 674, 762, 939, 1008
MslI CAYNNNNRTG 2 cut(s) 341, 755
Msp20I TGGCCA 1 cut(s) 497
MspA1I CMGCKG 1 cut(s) 10
MspCI CTTAAG 1 cut(s) 1007
MspI CCGG 6 cut(s) 38, 43, 72, 156, 206, 945
MspR9I CCNGG 7 cut(s) 38, 214, 433, 573, 945, 946, 1021
Mva1269I GAATGC 2 cut(s) 332, 836
MvaI CCWGG 4 cut(s) 214, 433, 573, 1021
MwoI GCNNNNNNNGC 5 cut(s) 108, 152, 158, 795, 1066
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 159
NciI CCSGG 3 cut(s) 38, 945, 946
NcoI CCATGG 1 cut(s) 454
NdeII GATC 3 cut(s) 315, 649, 679
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 6 cut(s) 368, 458, 562, 686, 735, 760
NlaIV GGNNCC 7 cut(s) 36, 76, 160, 210, 693, 927, 1017
NmeAIII GCCGAG 2 cut(s) 172, 1114
NsiI ATGCAT 2 cut(s) 838, 873
NspI RCATGY 1 cut(s) 735
PaeR7I CTCGAG 1 cut(s) 53
PasI CCCWGGG 1 cut(s) 1020
PciI ACATGT 1 cut(s) 731
PcsI WCGNNNNNNNCGW 1 cut(s) 258
PctI GAATGC 2 cut(s) 332, 836
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 199
PfoI TCCNGGA 2 cut(s) 431, 571
PkrI GCNGC 2 cut(s) 154, 788
PleI GAGTC 3 cut(s) 167, 263, 1099
PluTI GGCGCC 1 cut(s) 162
PpsI GAGTC 3 cut(s) 167, 263, 1099
PscI ACATGT 1 cut(s) 731
Psp6I CCWGG 4 cut(s) 212, 431, 571, 1019
PspGI CCWGG 4 cut(s) 212, 431, 571, 1019
PspN4I GGNNCC 7 cut(s) 36, 76, 160, 210, 693, 927, 1017
PspPI GGNCC 6 cut(s) 34, 40, 45, 298, 458, 692
PspXI VCTCGAGB 1 cut(s) 53
PvuII CAGCTG 1 cut(s) 10
RsaI GTAC 3 cut(s) 294, 452, 637
RsaNI GTAC 3 cut(s) 293, 451, 636
RseI CAYNNNNRTG 2 cut(s) 341, 755
Rsr2I CGGWCCG 1 cut(s) 40
RsrII CGGWCCG 1 cut(s) 40
SaqAI TTAA 5 cut(s) 407, 674, 762, 939, 1008
SatI GCNGC 2 cut(s) 153, 787
Sau3AI GATC 3 cut(s) 315, 649, 679
Sau96I GGNCC 6 cut(s) 34, 40, 45, 298, 458, 692
SchI GAGTC 3 cut(s) 167, 264, 1100
ScrFI CCNGG 7 cut(s) 38, 214, 433, 573, 945, 946, 1021
SduI GDGCHC 2 cut(s) 213, 348
SfaNI GCATC 4 cut(s) 437, 577, 823, 880
SfcI CTRYAG 1 cut(s) 878
SfoI GGCGCC 1 cut(s) 160
Sfr274I CTCGAG 1 cut(s) 53
SgrAI CRCCGGYG 1 cut(s) 155
SinI GGWCC 3 cut(s) 34, 40, 298
SlaI CTCGAG 1 cut(s) 53
SmaI CCCGGG 1 cut(s) 946
SmiMI CAYNNNNRTG 2 cut(s) 341, 755
SmlI CTYRAG 2 cut(s) 53, 1007
SmoI CTYRAG 2 cut(s) 53, 1007
Sse9I AATT 9 cut(s) 29, 217, 408, 597, 657, 671, 822, 962, 987
SsiI CCGC 2 cut(s) 153, 1045
SspDI GGCGCC 1 cut(s) 158
SspI AATATT 2 cut(s) 383, 937
SspMI CTAG 5 cut(s) 288, 468, 530, 1050, 1109
StyD4I CCNGG 7 cut(s) 36, 212, 431, 571, 943, 944, 1019
StyI CCWWGG 1 cut(s) 454
TaaI ACNGT 2 cut(s) 754, 1015
TaqI TCGA 4 cut(s) 54, 168, 197, 997
TasI AATT 9 cut(s) 29, 217, 408, 597, 657, 671, 822, 962, 987
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 199
Tru1I TTAA 5 cut(s) 407, 674, 762, 939, 1008
Tru9I TTAA 5 cut(s) 407, 674, 762, 939, 1008
TscAI CASTG 1 cut(s) 757
TseI GCWGC 1 cut(s) 786
TspDTI ATGAA 4 cut(s) 17, 325, 511, 817
TspGWI ACGGA 1 cut(s) 104
TspMI CCCGGG 1 cut(s) 944
TspRI CASTG 1 cut(s) 757
Vha464I CTTAAG 1 cut(s) 1007
VneI GTGCAC 1 cut(s) 344
VpaK11BI GGWCC 3 cut(s) 34, 40, 298
XagI CCTNNNNNAGG 1 cut(s) 146
XapI RAATTY 2 cut(s) 822, 962
XceI RCATGY 1 cut(s) 735
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XhoI CTCGAG 1 cut(s) 53
XmaI CCCGGG 1 cut(s) 944
XspI CTAG 5 cut(s) 288, 468, 530, 1050, 1109
Zsp2I ATGCAT 2 cut(s) 838, 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.