pycom05g12970

Glycerol-3-phosphate acyltransferase 3-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
16518512 .. 16522849
4338 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g12970.1

Sequence Viewer

Length: 1131 bp
ATGGGCGACCCCGGGAAGCTCCACTCCTCAAGCTCCGAATTGGACCTCGATCGCCCCAACCTCGAAGATTACCTTCCTTCCGGCACCTCCATCCAGCAGGAACCCCACGGCAAGCTTCGCCTGCGTGATTTGCTAGACATATCTCCTACCTTAACCGAGGCTGCTGGTGCCATTATCGATGACTCGTTCACAAGGTGCTTTAAGTCCAATCCTCCGGAGCCGTGGAACTGGAATGTGTATTTGTTCCCTTTGTGGTGTTTTGGAGTGGTGGTTCGGTACTTCATTCTATTTCCTGCGAGGGTTCTCGTTTTGACAATCGGATGGATAATTTTCCTTTCATCTTTCATTCCAGTGCACTTCCTGCTGAAGGGCCATGATAAATTGAGAAAGAATTTAGAGAGGCTCTTGGTAGAGTTAATTTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCACGGACCACGGCCCAGCATGCGGCCTAAGCAGGTCTTTGTGGCCAATCATACTTCCATGATTGATTTCATCATCTTAGAACAAATGACCGCATTTGCTGTAATTATGCAAAAGCATCCTGGATGGGTTGGATTGTTGCAAAGCACTATTTTGGAGAGCGTAGGGTGCATTTGGTTCAATCGTTCAGAGGCAAAGGATCGGGAAATTGTAACAAAGAAATTAAGGGACCATGTGCTGGGGGCAGACAACAACCCTCTCCTTATATTTCCTGAAGGAACATGTGTAAACAATCACTACACTGTTATGTTTAAGAAGGGTGCATTTGAGCTTGGCTGCTCAGTTTGCCCTGTCGCAATCAAGTACAACAAAATTTTTGTCGATGCTTTTTGGAACAGCAAAAAGCAGTCCTTCACAGTGCATCTGCTACAACTTATGACGGCATGGGCTGTTGTTTGTGATGTGTGGTATTTGGAGCCCCAAAACATTAGGCCTGGGGAAACCGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTGTTCGAGCAGGACTTAAGATGGTTCCGTGGGACGGGTATCTGAAATACTCTCGGCCCAGCCCAAAGCACAGAGAGCGAAGGCAACAAAACTTTGCTGAGACTATGCTACGACGCCTAGAGGACAAGTAA

Protein Analysis

377

Amino Acids

43.27

Weight (kDa)

8.92

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 152 - 274 8.8e-26 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 484
AccB1I GGYRCC 2 cut(s) 83, 167
AccB7I CCANNNNNTGG 1 cut(s) 697
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 3 cut(s) 484, 552, 963
AclWI GGATC 1 cut(s) 666
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 3 cut(s) 391, 831, 971
AcuI CTGAAG 2 cut(s) 386, 753
AcyI GRCGYC 1 cut(s) 1114
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 3 cut(s) 278, 461, 824
AfiI CCNNNNNNNGG 4 cut(s) 367, 483, 697, 1034
AflII CTTAAG 1 cut(s) 1016
AflIII ACRYGT 1 cut(s) 740
AgsI TTSAA 2 cut(s) 640, 971
AjnI CCWGG 2 cut(s) 580, 952
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 5 cut(s) 19, 33, 115, 426, 790
AluI AGCT 5 cut(s) 19, 33, 115, 426, 790
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 1 cut(s) 1094
Alw44I GTGCAC 1 cut(s) 353
AlwI GGATC 1 cut(s) 666
Ama87I CYCGRG 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 6 cut(s) 370, 473, 485, 504, 950, 1055
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 161, 795
ApoI RAATTY 3 cut(s) 391, 831, 971
ArsI GACNNNNNNTTYG 2 cut(s) 822, 854
AspS9I GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
AsuC2I CCSGG 2 cut(s) 12, 13
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 3 cut(s) 43, 467, 688
BaeGI GKGCMC 1 cut(s) 357
BalI TGGCCA 1 cut(s) 506
BanI GGYRCC 2 cut(s) 83, 167
BanII GRGCYC 1 cut(s) 939
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 2 cut(s) 148, 782
BccI CCATC 4 cut(s) 98, 315, 579, 1015
BceAI ACGGC 4 cut(s) 124, 205, 488, 915
BciT130I CCWGG 2 cut(s) 582, 954
BcnI CCSGG 2 cut(s) 12, 13
BcoDI GTCTC 1 cut(s) 1094
BfaI CTAG 2 cut(s) 134, 1118
BfrI CTTAAG 1 cut(s) 1016
BfuAI ACCTGC 1 cut(s) 484
BisI GCNGC 3 cut(s) 162, 485, 796
BlsI GCNGC 3 cut(s) 163, 486, 797
Bme1390I CCNGG 4 cut(s) 12, 13, 582, 954
Bme18I GGWCC 3 cut(s) 43, 467, 688
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
BmiI GGNNCC 7 cut(s) 85, 102, 169, 219, 689, 936, 1026
BmrFI CCNGG 4 cut(s) 12, 13, 582, 954
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 4 cut(s) 446, 586, 832, 889
BmuI ACTGGG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 13
BpuMI CCSGG 2 cut(s) 12, 13
Bsa29I ATCGAT 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 1114
BsaJI CCNNGG 9 cut(s) 10, 11, 106, 156, 221, 463, 470, 953, 1028
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 4 cut(s) 367, 483, 697, 1034
Bse1I ACTGG 3 cut(s) 233, 350, 451
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 2 cut(s) 582, 954
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 9 cut(s) 10, 11, 106, 156, 221, 463, 470, 953, 1028
BseGI GGATG 4 cut(s) 90, 326, 577, 590
BseLI CCNNNNNNNGG 4 cut(s) 367, 483, 697, 1034
BseMII CTCAG 2 cut(s) 813, 1089
BseNI ACTGG 3 cut(s) 233, 350, 451
BseRI GAGGAG 1 cut(s) 16
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 2 cut(s) 148, 782
BseYI CCCAGC 3 cut(s) 476, 697, 1058
Bsh1285I CGRYCG 1 cut(s) 52
BshFI GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
BshNI GGYRCC 2 cut(s) 83, 167
BshVI ATCGAT 1 cut(s) 177
BsiEI CGRYCG 1 cut(s) 52
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 3 cut(s) 12, 81, 215
BslFI GGGAC 3 cut(s) 701, 1004, 1046
BslI CCNNNNNNNGG 4 cut(s) 367, 483, 697, 1034
BsmAI GTCTC 1 cut(s) 1094
BsmFI GGGAC 3 cut(s) 701, 1004, 1046
BsnI GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 357, 939
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 2 cut(s) 49, 658
BspACI CCGC 3 cut(s) 484, 552, 963
BspANI GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
BspCNI CTCAG 2 cut(s) 812, 1090
BspDI ATCGAT 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 214
BspLI GGNNCC 7 cut(s) 85, 102, 169, 219, 689, 936, 1026
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 1 cut(s) 666
BspT107I GGYRCC 2 cut(s) 83, 167
BspTI CTTAAG 1 cut(s) 1016
BsrI ACTGG 3 cut(s) 233, 350, 451
BssECI CCNNGG 9 cut(s) 10, 11, 106, 156, 221, 463, 470, 953, 1028
BssMI GATC 2 cut(s) 49, 658
BssNI GRCGYC 1 cut(s) 1114
Bst2UI CCWGG 2 cut(s) 582, 954
Bst4CI ACNGT 2 cut(s) 763, 877
BstACI GRCGYC 1 cut(s) 1114
BstAFI CTTAAG 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 113, 122, 482
BstDEI CTNAG 4 cut(s) 489, 538, 799, 1098
BstDSI CCRYGG 5 cut(s) 106, 221, 463, 470, 1028
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 4 cut(s) 90, 326, 577, 590
BstKTI GATC 2 cut(s) 52, 661
BstMAI GTCTC 1 cut(s) 1094
BstMBI GATC 2 cut(s) 49, 658
BstMCI CGRYCG 1 cut(s) 52
BstNI CCWGG 2 cut(s) 582, 954
BstNSI RCATGY 2 cut(s) 484, 744
BstSCI CCNGG 4 cut(s) 10, 11, 580, 952
BstSLI GKGCMC 1 cut(s) 357
BstV1I GCAGC 2 cut(s) 148, 782
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 5 cut(s) 106, 221, 463, 470, 1028
BtsCI GGATG 4 cut(s) 90, 326, 577, 590
BtsIMutI CAGTG 3 cut(s) 357, 759, 882
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 3 cut(s) 113, 122, 482
Cfr13I GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
Cfr9I CCCGGG 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 1122
Csp6I GTAC 3 cut(s) 277, 460, 823
CviAII CATG 6 cut(s) 374, 481, 520, 692, 741, 903
CviQI GTAC 3 cut(s) 277, 460, 823
DdeI CTNAG 4 cut(s) 489, 538, 799, 1098
DpnI GATC 2 cut(s) 51, 660
DpnII GATC 2 cut(s) 49, 658
DraIII CACNNNGTG 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 504
Eco147I AGGCCT 1 cut(s) 952
Eco24I GRGCYC 1 cut(s) 939
Eco47I GGWCC 3 cut(s) 43, 467, 688
Eco57I CTGAAG 2 cut(s) 386, 753
Eco88I CYCGRG 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoRII CCWGG 2 cut(s) 580, 952
EcoT38I GRGCYC 1 cut(s) 939
FaeI CATG 6 cut(s) 377, 484, 523, 695, 744, 906
FalI AAGNNNNNCTT 6 cut(s) 57, 89, 482, 514, 854, 886
FaqI GGGAC 3 cut(s) 701, 1004, 1046
FatI CATG 6 cut(s) 373, 480, 519, 691, 740, 902
Fnu4HI GCNGC 3 cut(s) 162, 485, 796
FokI GGATG 4 cut(s) 77, 333, 564, 597
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 3 cut(s) 162, 485, 796
FspBI CTAG 2 cut(s) 134, 1118
GluI GCNGC 3 cut(s) 162, 485, 796
GsaI CCCAGC 3 cut(s) 480, 701, 1062
HaeIII GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
HapII CCGG 3 cut(s) 12, 81, 215
HgaI GACGC 1 cut(s) 1122
Hin1I GRCGYC 1 cut(s) 1114
Hin1II CATG 6 cut(s) 377, 484, 523, 695, 744, 906
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 12, 81, 215
Hpy166II GTNNAC 3 cut(s) 189, 355, 748
Hpy188I TCNGA 4 cut(s) 37, 320, 649, 1044
Hpy188III TCNNGA 3 cut(s) 215, 662, 731
Hpy8I GTNNAC 3 cut(s) 189, 355, 748
Hpy99I CGWCG 1 cut(s) 1116
HpyAV CCTTC 7 cut(s) 83, 87, 361, 728, 769, 880, 1074
HpyCH4III ACNGT 2 cut(s) 763, 877
HpyCH4V TGCA 8 cut(s) 355, 437, 571, 601, 630, 782, 880, 977
HpyF3I CTNAG 4 cut(s) 489, 538, 799, 1098
Hsp92I GRCGYC 1 cut(s) 1114
Hsp92II CATG 6 cut(s) 377, 484, 523, 695, 744, 906
Kpn2I TCCGGA 1 cut(s) 214
Kzo9I GATC 2 cut(s) 49, 658
LmnI GCTCC 4 cut(s) 24, 38, 217, 934
Lsp1109I GCAGC 2 cut(s) 148, 782
LweI GCATC 4 cut(s) 446, 586, 832, 889
MaeI CTAG 2 cut(s) 134, 1118
MaeIII GTNAC 1 cut(s) 670
MalI GATC 2 cut(s) 51, 660
MboI GATC 2 cut(s) 49, 658
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 357, 939
MlsI TGGCCA 1 cut(s) 506
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 571
Mox20I TGGCCA 1 cut(s) 506
MroI TCCGGA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 506
MseI TTAA 6 cut(s) 152, 201, 416, 683, 771, 1017
MslI CAYNNNNRTG 2 cut(s) 350, 764
Msp20I TGGCCA 1 cut(s) 506
MspCI CTTAAG 1 cut(s) 1016
MspI CCGG 3 cut(s) 12, 81, 215
MspR9I CCNGG 4 cut(s) 12, 13, 582, 954
MvaI CCWGG 2 cut(s) 582, 954
NciI CCSGG 2 cut(s) 12, 13
NdeII GATC 2 cut(s) 49, 658
NlaIII CATG 6 cut(s) 377, 484, 523, 695, 744, 906
NlaIV GGNNCC 7 cut(s) 85, 102, 169, 219, 689, 936, 1026
NmeAIII GCCGAG 1 cut(s) 1033
NspI RCATGY 2 cut(s) 484, 744
PaeI GCATGC 1 cut(s) 484
PceI AGGCCT 1 cut(s) 952
PciI ACATGT 1 cut(s) 740
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 3 cut(s) 163, 486, 797
Ple19I CGATCG 1 cut(s) 52
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PscI ACATGT 1 cut(s) 740
Psp6I CCWGG 2 cut(s) 580, 952
PspFI CCCAGC 3 cut(s) 476, 697, 1058
PspGI CCWGG 2 cut(s) 580, 952
PspN4I GGNNCC 7 cut(s) 85, 102, 169, 219, 689, 936, 1026
PspPI GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
PvuI CGATCG 1 cut(s) 52
RsaI GTAC 3 cut(s) 278, 461, 824
RsaNI GTAC 3 cut(s) 277, 460, 823
RseI CAYNNNNRTG 2 cut(s) 350, 764
SaqAI TTAA 6 cut(s) 152, 201, 416, 683, 771, 1017
SatI GCNGC 3 cut(s) 162, 485, 796
Sau3AI GATC 2 cut(s) 49, 658
Sau96I GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 4 cut(s) 12, 13, 582, 954
SduI GDGCHC 2 cut(s) 357, 939
SfaNI GCATC 4 cut(s) 446, 586, 832, 889
SinI GGWCC 3 cut(s) 43, 467, 688
SmaI CCCGGG 1 cut(s) 13
SmiMI CAYNNNNRTG 2 cut(s) 350, 764
SmlI CTYRAG 2 cut(s) 28, 1016
SmoI CTYRAG 2 cut(s) 28, 1016
SphI GCATGC 1 cut(s) 484
SseBI AGGCCT 1 cut(s) 952
SsiI CCGC 3 cut(s) 484, 552, 963
SspMI CTAG 2 cut(s) 134, 1118
StuI AGGCCT 1 cut(s) 952
StyD4I CCNGG 4 cut(s) 10, 11, 580, 952
TaaI ACNGT 2 cut(s) 763, 877
TaqI TCGA 5 cut(s) 48, 63, 177, 840, 1006
TatI WGTACW 1 cut(s) 822
TauI GCSGC 1 cut(s) 487
Tru1I TTAA 6 cut(s) 152, 201, 416, 683, 771, 1017
Tru9I TTAA 6 cut(s) 152, 201, 416, 683, 771, 1017
TscAI CASTG 3 cut(s) 357, 766, 882
TseI GCWGC 2 cut(s) 161, 795
TspDTI ATGAA 4 cut(s) 271, 327, 334, 520
TspGWI ACGGA 2 cut(s) 480, 1017
TspMI CCCGGG 1 cut(s) 11
TspRI CASTG 3 cut(s) 357, 766, 882
Van91I CCANNNNNTGG 1 cut(s) 697
Vha464I CTTAAG 1 cut(s) 1016
VneI GTGCAC 1 cut(s) 353
VpaK11BI GGWCC 3 cut(s) 43, 467, 688
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 3 cut(s) 391, 831, 971
XceI RCATGY 2 cut(s) 484, 744
XmaI CCCGGG 1 cut(s) 11
XspI CTAG 2 cut(s) 134, 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.