Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002845

Physical Location & Seq

Genomic Coordinates Forward (+)

24367142 .. 24369790

Gene Structure 2649 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G60620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGAGCAGTACGGCAGGGAGGCTCGTGACTTCAAAATCCGAGCTTGACCTCGATCACCCTAACATCGAAGATTACCTTCCTTCTGGTTCTTCCATCAATGAACCTCGCGGCAAGCTCAGCCTGCGTGATTTGCTAGACATCTCTCCAACGCTCACTGAAGCTGCTGGTGCCATTGTTGATGACTCGTTCACAAGATGTTTCAAATCAAATCCTCCAGAACCTTGGAACTGGAATATTTACTTATTCCCACTATACTGCTTTGGGGTTGTTGTTAGATACTGTATCCTCTTTCCCTTGAGGTGCTTCACTTTAGCTTTTGGGTGGATTATTTTCCTTTCATTGTTTATCCCTGTAAATGCGTTGCTGAAAGGTCAAGATAGGTTGAGGAAAAAGATAGAGAGGGTCTTGGTGGAAATGATTTGCAGCTTTTTTGTCGCCTCATGGACCGGAGTTGTCAAATATCACGGGCCACGTCCTAGCATCCGTCCTAAGCAGGTCTATGTTGCCAACCATACTTCAATGATTGATTTCATCGTATTGGAGCAGATGACCGCATTTGCTGTTATAATGCAGAAGCATCCTGGTTGGGTTGGTCTTCTGCAAAGCACAATATTAGAGAGTGTGGGATGTATCTGGTTCAATCGTTCAGAGGCAAAGGATCGTGAAATTGTAGCAAAAAAGTTAAGGGACCATGTCCAAGGAGCTGACAGTAATCCTCTTCTCATATTTCCCGAAGGGACATGTGTAAATAATAATTACACAGTGATGTTTAAGAAGGGTGCTTTTGAATTGGACTGCACTGTTTGTCCAATTGCAATTAAATACAACAAGATTTTTGTTGACGCCTTCTGGAATAGCAGAAAACAATCATTTACTATGCACTTGCTGCAACTCATGACATCATGGGCTGTTGTATGTGAAGTGTGGTACTTGGAACCACAAACCATAAGGCCCGGTGAAACAGGAATTGAATTTGCAGAGAGGGTCAGAGACATGATATCTCTTCGGGCGGGTCTCAAAAAGGTCCCTTGGGATGGATACTTGAAGTATTCGAGACCAAGCCCCAAGCATAGTGAACGCAAGCAACAGAGTTTCGCAGAGTCGATCCTGGCTAGATTGGAAGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004366 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006072 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006638 GO:0006639 GO:0006641 GO:0006651 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010154 GO:0010344 GO:0010876 GO:0012505 GO:0016020 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0019637 GO:0019752 GO:0019915 GO:0021700 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051235 GO:0052646 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098827 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

376

Amino Acids

43.02

Weight (kDa)

8.81

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	152 - 274	7.9e-26	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60620
fragaria_vesca	FvH4_2g16380 FvH4_2g16380 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680
malus_domestica	MD00G1083900.v1.1 MD10G1138100.v1.1
prunus_persica	Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1
pyrus_communis	pycom05g12970 pycom10g11750
rosa_chinensis	RchiOBHm_Chr6g0280151
rosa_laevigata	RLG00000013081 RLG00000036589
rosa_multiflora	Rmu_sc0002826.1_g000032
rosa_roxburghii	Rroxscaffold_7G00188350
rosa_rugosa	Rorug01G0184800 Rorug04G0199200 Rorug06G0130200 Rorug06G0130300 Rorug06G0215900 Rorug07G0231300
rosa_samantha	Rh2CG447400 Rh6AG240600 Rh6BG202200 Rh6BG202300 Rh6BG244300 Rh6CG245900 Rh6DG237000
rosa_wichuraiana	Rw6G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	566
Acc36I	ACCTGC	1 cut(s)	484
AccB1I	GGYRCC	1 cut(s)	167
AccII	CGCG	1 cut(s)	108
AciI	CCGC	3 cut(s)	108, 552, 1010
AclWI	GGATC	2 cut(s)	666, 1099
AcsI	RAATTY	1 cut(s)	971
AcuI	CTGAAG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	843
AfaI	GTAC	2 cut(s)	10, 929
AfiI	CCNNNNNNNGG	1 cut(s)	1034
AflIII	ACRYGT	1 cut(s)	740
AgsI	TTSAA	7 cut(s)	33, 202, 519, 640, 788, 971, 1045
AjiI	CACGTC	1 cut(s)	473
AjnI	CCWGG	2 cut(s)	580, 1107
AluBI	AGCT	6 cut(s)	43, 115, 161, 314, 426, 704
AluI	AGCT	6 cut(s)	43, 115, 161, 314, 426, 704
Alw26I	GTCTC	3 cut(s)	984, 1019, 1048
AlwI	GGATC	2 cut(s)	666, 1099
AoxI	GGCC	2 cut(s)	467, 950
ApeKI	GCWGC	3 cut(s)	161, 423, 886
ApoI	RAATTY	1 cut(s)	971
AspS9I	GGNCC	5 cut(s)	444, 467, 688, 951, 1024
AsuC2I	CCSGG	1 cut(s)	954
AsuHPI	GGTGA	2 cut(s)	47, 968
AvaII	GGWCC	3 cut(s)	444, 688, 1024
BanI	GGYRCC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	23
BbsI	GAAGAC	1 cut(s)	587
BbvI	GCAGC	3 cut(s)	148, 435, 873
BccI	CCATC	2 cut(s)	101, 1028
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	582, 1109
BciVI	GTATCC	2 cut(s)	293, 1031
BcnI	CCSGG	1 cut(s)	954
BcoDI	GTCTC	3 cut(s)	984, 1019, 1048
BfaI	CTAG	3 cut(s)	134, 477, 1113
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	2 cut(s)	293, 1031
BisI	GCNGC	4 cut(s)	109, 162, 424, 887
BlpI	GCTNAGC	1 cut(s)	116
BlsI	GCNGC	4 cut(s)	110, 163, 425, 888
Bme1390I	CCNGG	3 cut(s)	582, 954, 1109
Bme18I	GGWCC	3 cut(s)	444, 688, 1024
BmgBI	CACGTC	1 cut(s)	473
BmgT120I	GGNCC	5 cut(s)	444, 467, 688, 951, 1024
BmiI	GGNNCC	4 cut(s)	169, 689, 936, 1026
BmrFI	CCNGG	3 cut(s)	582, 954, 1109
BmsI	GCATC	2 cut(s)	489, 586
BpiI	GAAGAC	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	316
BpuMI	CCSGG	1 cut(s)	954
BsaHI	GRCGYC	1 cut(s)	843
BsaI	GGTCTC	2 cut(s)	1019, 1048
BsaJI	CCNNGG	3 cut(s)	221, 697, 1028
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	1 cut(s)	1034
Bse1I	ACTGG	1 cut(s)	233
BseBI	CCWGG	2 cut(s)	582, 1109
BseDI	CCNNGG	3 cut(s)	221, 697, 1028
BseGI	GGATG	4 cut(s)	480, 577, 632, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	1034
BseMII	CTCAG	1 cut(s)	130
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	3 cut(s)	148, 435, 873
BsgI	GTGCAG	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	2 cut(s)	469, 952
BshNI	GGYRCC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	447, 954
BslFI	GGGAC	3 cut(s)	701, 751, 1010
BslI	CCNNNNNNNGG	1 cut(s)	1034
BsmAI	GTCTC	3 cut(s)	984, 1019, 1048
BsmFI	GGGAC	3 cut(s)	701, 751, 1010
BsnI	GGCC	2 cut(s)	469, 952
Bso31I	GGTCTC	2 cut(s)	1019, 1048
Bsp143I	GATC	3 cut(s)	52, 658, 1104
Bsp1720I	GCTNAGC	1 cut(s)	116
BspACI	CCGC	3 cut(s)	108, 552, 1010
BspANI	GGCC	2 cut(s)	469, 952
BspCNI	CTCAG	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	4 cut(s)	169, 689, 936, 1026
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	666, 1099
BspT107I	GGYRCC	1 cut(s)	167
BspTNI	GGTCTC	2 cut(s)	1019, 1048
BsrI	ACTGG	1 cut(s)	233
BssECI	CCNNGG	3 cut(s)	221, 697, 1028
BssMI	GATC	3 cut(s)	52, 658, 1104
BssNI	GRCGYC	1 cut(s)	843
BssSI	CACGAG	1 cut(s)	23
BssT1I	CCWWGG	3 cut(s)	221, 697, 1028
Bst2BI	CACGAG	1 cut(s)	23
Bst2UI	CCWGG	2 cut(s)	582, 1109
Bst4CI	ACNGT	4 cut(s)	281, 710, 763, 802
Bst6I	CTCTTC	3 cut(s)	723, 1008, 1116
BstACI	GRCGYC	1 cut(s)	843
BstAPI	GCANNNNNTGC	1 cut(s)	886
BstC8I	GCNNGC	3 cut(s)	113, 122, 1082
BstDEI	CTNAG	2 cut(s)	116, 489
BstF5I	GGATG	4 cut(s)	480, 577, 632, 1039
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	3 cut(s)	55, 661, 1107
BstMAI	GTCTC	3 cut(s)	984, 1019, 1048
BstMBI	GATC	3 cut(s)	52, 658, 1104
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 121, 130, 167, 886
BstNI	CCWGG	2 cut(s)	582, 1109
BstNSI	RCATGY	1 cut(s)	744
BstSCI	CCNGG	3 cut(s)	580, 952, 1107
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	148, 435, 873
BstV2I	GAAGAC	1 cut(s)	587
BstXI	CCANNNNNNTGG	1 cut(s)	222
BsuI	GTATCC	2 cut(s)	293, 1031
BsuRI	GGCC	2 cut(s)	469, 952
BtrI	CACGTC	1 cut(s)	473
BtsCI	GGATG	4 cut(s)	480, 577, 632, 1039
BtsIMutI	CAGTG	3 cut(s)	153, 768, 798
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	113, 122, 1082
CciI	TCATGA	1 cut(s)	894
Cfr13I	GGNCC	5 cut(s)	444, 467, 688, 951, 1024
CseI	GACGC	1 cut(s)	851
Csp6I	GTAC	2 cut(s)	9, 928
CviAII	CATG	6 cut(s)	441, 692, 741, 895, 903, 994
CviQI	GTAC	2 cut(s)	9, 928
DdeI	CTNAG	2 cut(s)	116, 489
DpnI	GATC	3 cut(s)	54, 660, 1106
DpnII	GATC	3 cut(s)	52, 658, 1104
Eam1104I	CTCTTC	3 cut(s)	723, 1008, 1116
EarI	CTCTTC	3 cut(s)	723, 1008, 1116
Eco130I	CCWWGG	3 cut(s)	221, 697, 1028
Eco31I	GGTCTC	2 cut(s)	1019, 1048
Eco32I	GATATC	1 cut(s)	999
Eco47I	GGWCC	3 cut(s)	444, 688, 1024
Eco57I	CTGAAG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	1024
EcoRII	CCWGG	2 cut(s)	580, 1107
EcoRV	GATATC	1 cut(s)	999
EcoT14I	CCWWGG	3 cut(s)	221, 697, 1028
ErhI	CCWWGG	3 cut(s)	221, 697, 1028
FaeI	CATG	6 cut(s)	444, 695, 744, 898, 906, 997
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FaqI	GGGAC	3 cut(s)	701, 751, 1010
FatI	CATG	6 cut(s)	440, 691, 740, 894, 902, 993
FauI	CCCGC	1 cut(s)	1003
Fnu4HI	GCNGC	4 cut(s)	109, 162, 424, 887
FokI	GGATG	4 cut(s)	467, 564, 639, 1046
Fsp4HI	GCNGC	4 cut(s)	109, 162, 424, 887
FspBI	CTAG	3 cut(s)	134, 477, 1113
GluI	GCNGC	4 cut(s)	109, 162, 424, 887
GsuI	CTGGAG	1 cut(s)	198
HaeIII	GGCC	2 cut(s)	469, 952
HapII	CCGG	2 cut(s)	447, 954
HgaI	GACGC	1 cut(s)	851
Hin1I	GRCGYC	1 cut(s)	843
Hin1II	CATG	6 cut(s)	444, 695, 744, 898, 906, 997
HincII	GTYRAC	1 cut(s)	841
HindII	GTYRAC	1 cut(s)	841
HinfI	GANTC	2 cut(s)	182, 1100
HpaII	CCGG	2 cut(s)	447, 954
HphI	GGTGA	2 cut(s)	47, 968
Hpy166II	GTNNAC	3 cut(s)	189, 841, 1076
Hpy188I	TCNGA	3 cut(s)	40, 649, 989
Hpy188III	TCNNGA	8 cut(s)	25, 215, 374, 662, 731, 850, 895, 1053
Hpy8I	GTNNAC	3 cut(s)	189, 841, 1076
HpyAV	CCTTC	5 cut(s)	86, 90, 728, 769, 856
HpyCH4III	ACNGT	4 cut(s)	281, 710, 763, 802
HpyCH4IV	ACGT	1 cut(s)	472
HpyCH4V	TGCA	8 cut(s)	423, 571, 601, 798, 815, 880, 889, 977
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 121, 130, 167, 886
HpyF3I	CTNAG	2 cut(s)	116, 489
HpySE526I	ACGT	1 cut(s)	472
Hsp92I	GRCGYC	1 cut(s)	843
Hsp92II	CATG	6 cut(s)	444, 695, 744, 898, 906, 997
Kzo9I	GATC	3 cut(s)	52, 658, 1104
LmnI	GCTCC	2 cut(s)	541, 701
Lsp1109I	GCAGC	3 cut(s)	148, 435, 873
LweI	GCATC	2 cut(s)	489, 586
MaeI	CTAG	3 cut(s)	134, 477, 1113
MaeII	ACGT	1 cut(s)	472
MaeIII	GTNAC	1 cut(s)	25
MalI	GATC	3 cut(s)	54, 660, 1106
MboI	GATC	3 cut(s)	52, 658, 1104
MboII	GAAGA	5 cut(s)	80, 81, 587, 710, 995
MfeI	CAATTG	1 cut(s)	810
MluCI	AATT	7 cut(s)	666, 754, 788, 810, 816, 966, 971
MlyI	GAGTC	2 cut(s)	176, 1109
MmeI	TCCRAC	1 cut(s)	170
MseI	TTAA	3 cut(s)	683, 771, 819
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	2 cut(s)	447, 954
MspR9I	CCNGG	3 cut(s)	582, 954, 1109
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	2 cut(s)	582, 1109
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	5 cut(s)	117, 121, 130, 167, 886
NciI	CCSGG	1 cut(s)	954
NdeII	GATC	3 cut(s)	52, 658, 1104
NlaIII	CATG	6 cut(s)	444, 695, 744, 898, 906, 997
NlaIV	GGNNCC	4 cut(s)	169, 689, 936, 1026
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	744
PagI	TCATGA	1 cut(s)	894
PciI	ACATGT	1 cut(s)	740
PflFI	GACNNNGTC	1 cut(s)	692
PkrI	GCNGC	4 cut(s)	110, 163, 425, 888
PleI	GAGTC	2 cut(s)	176, 1108
PpsI	GAGTC	2 cut(s)	176, 1108
PpuMI	RGGWCCY	1 cut(s)	1024
PscI	ACATGT	1 cut(s)	740
PsiI	TTATAA	1 cut(s)	566
Psp5II	RGGWCCY	1 cut(s)	1024
Psp6I	CCWGG	2 cut(s)	580, 1107
PspGI	CCWGG	2 cut(s)	580, 1107
PspN4I	GGNNCC	4 cut(s)	169, 689, 936, 1026
PspPI	GGNCC	5 cut(s)	444, 467, 688, 951, 1024
PspPPI	RGGWCCY	1 cut(s)	1024
PsyI	GACNNNGTC	1 cut(s)	692
RsaI	GTAC	2 cut(s)	10, 929
RsaNI	GTAC	2 cut(s)	9, 928
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	683, 771, 819
SatI	GCNGC	4 cut(s)	109, 162, 424, 887
Sau3AI	GATC	3 cut(s)	52, 658, 1104
Sau96I	GGNCC	5 cut(s)	444, 467, 688, 951, 1024
SchI	GAGTC	2 cut(s)	176, 1109
ScrFI	CCNGG	3 cut(s)	582, 954, 1109
SfaNI	GCATC	2 cut(s)	489, 586
SinI	GGWCC	3 cut(s)	444, 688, 1024
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	7 cut(s)	666, 754, 788, 810, 816, 966, 971
SsiI	CCGC	3 cut(s)	108, 552, 1010
SspI	AATATT	2 cut(s)	235, 612
SspMI	CTAG	3 cut(s)	134, 477, 1113
StyD4I	CCNGG	3 cut(s)	580, 952, 1107
StyI	CCWWGG	3 cut(s)	221, 697, 1028
TaaI	ACNGT	4 cut(s)	281, 710, 763, 802
TaiI	ACGT	1 cut(s)	475
TaqI	TCGA	4 cut(s)	51, 66, 1052, 1103
TasI	AATT	7 cut(s)	666, 754, 788, 810, 816, 966, 971
TauI	GCSGC	1 cut(s)	111
Tru1I	TTAA	3 cut(s)	683, 771, 819
Tru9I	TTAA	3 cut(s)	683, 771, 819
TscAI	CASTG	3 cut(s)	160, 768, 805
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	3 cut(s)	161, 423, 886
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	3 cut(s)	114, 327, 520
TspGWI	ACGGA	1 cut(s)	473
TspRI	CASTG	3 cut(s)	160, 768, 805
Tth111I	GACNNNGTC	1 cut(s)	692
VpaK11BI	GGWCC	3 cut(s)	444, 688, 1024
XapI	RAATTY	1 cut(s)	971
XceI	RCATGY	1 cut(s)	744
XspI	CTAG	3 cut(s)	134, 477, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.