Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002845

Physical Location & Seq

Genomic Coordinates Forward (+)

38152394 .. 38154264

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG202300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGAGGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCTGGAACAAATGATGAGTGTGGGATGTATCTGGTTCAATCGTTCAGAATCAAAGGATCGGGAAATTGGTGCATTTGAGCTTGGCTGCTCAATTTGCCCTGTCGCAATTAAGTACAATAAAATTTTCGTTGATGCATTCTGGAACAGCAGAAAGCAATCCTTCACAATGTATCTGCTACAGCTTATGACATCATGGGCTTTTGTTTGTGATGTGTGGTATTTGGAGCCCGAAAATATGAAGCCTGGGGAGACTGCCATTGAATTTGCAGAGGGTCAGGGACATAATTTCTATTCGAGCAGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004366 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006072 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006638 GO:0006639 GO:0006641 GO:0006651 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010154 GO:0010344 GO:0010876 GO:0012505 GO:0016020 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0019637 GO:0019752 GO:0019915 GO:0021700 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051235 GO:0052646 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098827 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

141

Amino Acids

16.3

Weight (kDa)

6.81

Isoelectric Point (pI)

44.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60620
fragaria_vesca	FvH4_2g16380 FvH4_2g16380 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680
malus_domestica	MD00G1083900.v1.1 MD10G1138100.v1.1
prunus_persica	Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1
pyrus_communis	pycom05g12970 pycom10g11750
rosa_chinensis	RchiOBHm_Chr6g0280151
rosa_laevigata	RLG00000013081 RLG00000036589
rosa_multiflora	Rmu_sc0002826.1_g000032
rosa_roxburghii	Rroxscaffold_7G00188350
rosa_rugosa	Rorug01G0184800 Rorug04G0199200 Rorug06G0130200 Rorug06G0130300 Rorug06G0215900 Rorug07G0231300
rosa_samantha	Rh2CG447400 Rh6AG240600 Rh6BG202200 Rh6BG202300 Rh6BG244300 Rh6CG245900 Rh6DG237000
rosa_wichuraiana	Rw6G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	240, 380
AfaI	GTAC	2 cut(s)	44, 233
AgsI	TTSAA	2 cut(s)	157, 380
AjnI	CCWGG	2 cut(s)	120, 361
AluBI	AGCT	3 cut(s)	9, 199, 301
AluI	AGCT	3 cut(s)	9, 199, 301
Alw26I	GTCTC	1 cut(s)	362
AlwI	GGATC	1 cut(s)	183
AoxI	GGCC	2 cut(s)	68, 87
ApeKI	GCWGC	1 cut(s)	204
ApoI	RAATTY	2 cut(s)	240, 380
AspS9I	GGNCC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	50
BalI	TGGCCA	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	348
BbvI	GCAGC	1 cut(s)	191
BciT130I	CCWGG	2 cut(s)	122, 363
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	60
BfmI	CTRYAG	1 cut(s)	296
BfuAI	ACCTGC	1 cut(s)	67
BisI	GCNGC	1 cut(s)	205
BlsI	GCNGC	1 cut(s)	206
Bme1390I	CCNGG	2 cut(s)	122, 363
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	345
BmrFI	CCNGG	2 cut(s)	122, 363
BmrI	ACTGGG	1 cut(s)	39
BmsI	GCATC	2 cut(s)	29, 241
BmuI	ACTGGG	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	46, 362
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	122, 363
BseDI	CCNNGG	2 cut(s)	46, 362
BseGI	GGATG	2 cut(s)	117, 149
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	1 cut(s)	191
BshFI	GGCC	2 cut(s)	70, 89
BslFI	GGGAC	1 cut(s)	411
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	411
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	70, 89
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	46
BspANI	GGCC	2 cut(s)	70, 89
BspLI	GGNNCC	1 cut(s)	345
BspMI	ACCTGC	1 cut(s)	67
BspPI	GGATC	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	2 cut(s)	46, 362
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	1 cut(s)	46
Bst2UI	CCWGG	2 cut(s)	122, 363
BstDSI	CCRYGG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	117, 149
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	213
BstNI	CCWGG	2 cut(s)	122, 363
BstSCI	CCNGG	2 cut(s)	120, 361
BstSFI	CTRYAG	1 cut(s)	296
BstV1I	GCAGC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	70, 89
BtgI	CCRYGG	1 cut(s)	46
BtsCI	GGATG	2 cut(s)	117, 149
BveI	ACCTGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	43, 232
CviAII	CATG	2 cut(s)	47, 312
CviQI	GTAC	2 cut(s)	43, 232
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
EaeI	YGGCCR	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	46
Eco24I	GRGCYC	1 cut(s)	348
Eco47I	GGWCC	1 cut(s)	50
EcoRII	CCWGG	2 cut(s)	120, 361
EcoT14I	CCWWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	46
FaeI	CATG	2 cut(s)	50, 315
FaiI	YATR	8 cut(s)	48, 65, 96, 104, 305, 313, 356, 402
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	2 cut(s)	46, 311
Fnu4HI	GCNGC	1 cut(s)	205
FokI	GGATG	2 cut(s)	104, 156
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	1 cut(s)	205
FspBI	CTAG	1 cut(s)	60
GluI	GCNGC	1 cut(s)	205
HaeIII	GGCC	2 cut(s)	70, 89
Hin1II	CATG	2 cut(s)	50, 315
HinfI	GANTC	1 cut(s)	167
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	2 cut(s)	179, 259
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	4 cut(s)	20, 191, 254, 386
HpyF10VI	GCNNNNNNNGC	1 cut(s)	213
Hsp92II	CATG	2 cut(s)	50, 315
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	1 cut(s)	343
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	2 cut(s)	29, 241
MaeI	CTAG	1 cut(s)	60
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	89
MluCI	AATT	6 cut(s)	183, 210, 225, 240, 380, 403
MluNI	TGGCCA	1 cut(s)	89
MnlI	CCTC	2 cut(s)	60, 382
Mox20I	TGGCCA	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	89
MseI	TTAA	2 cut(s)	228, 424
Msp20I	TGGCCA	1 cut(s)	89
MspR9I	CCNGG	2 cut(s)	122, 363
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	2 cut(s)	122, 363
MwoI	GCNNNNNNNGC	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	2 cut(s)	50, 315
NlaIV	GGNNCC	1 cut(s)	345
NsiI	ATGCAT	1 cut(s)	256
PctI	GAATGC	1 cut(s)	254
PfeI	GAWTC	1 cut(s)	167
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	120, 361
PspGI	CCWGG	2 cut(s)	120, 361
PspN4I	GGNNCC	1 cut(s)	345
PspPI	GGNCC	1 cut(s)	50
RsaI	GTAC	2 cut(s)	44, 233
RsaNI	GTAC	2 cut(s)	43, 232
SaqAI	TTAA	2 cut(s)	228, 424
SatI	GCNGC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	50
ScrFI	CCNGG	2 cut(s)	122, 363
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	4 cut(s)	11, 81, 201, 303
SfaNI	GCATC	2 cut(s)	29, 241
SfcI	CTRYAG	1 cut(s)	296
SinI	GGWCC	1 cut(s)	50
Sse9I	AATT	6 cut(s)	183, 210, 225, 240, 380, 403
SspMI	CTAG	1 cut(s)	60
StyD4I	CCNGG	2 cut(s)	120, 361
StyI	CCWWGG	1 cut(s)	46
TaqI	TCGA	1 cut(s)	413
TasI	AATT	6 cut(s)	183, 210, 225, 240, 380, 403
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	2 cut(s)	228, 424
Tru9I	TTAA	2 cut(s)	228, 424
TseI	GCWGC	1 cut(s)	204
TspDTI	ATGAA	2 cut(s)	103, 371
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	2 cut(s)	240, 380
XspI	CTAG	1 cut(s)	60
Zsp2I	ATGCAT	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.