MD00G1083900.v1.1

Glycerol-3-phosphate acyltransferase 3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Reverse (-)
16676336 .. 16681441
5106 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1083900.v1.1.491

Sequence Viewer

Length: 1131 bp
ATGGGCGACCCCGGGAAGCTCAACTCCTCAAGCTCCGAATTGGACCTCGATCGCCCCAACCTCGAAGATTACCTTCCTTCCGGCACCTCCATCCAGCAGGAACCCCAGGGCAAGCTTCGCCTGCGTGATTTGCTTGACATATCTCCCACCTTAACGGAGACTGCTGGTGCCATTATCGATGACTCGTTCACAAGGTGCTTTAAGTCCAATCCTCCGGAGCCGTGGAACTGGAATGTGTATTTGTTTCCTTTGTGGTGTTTTGGAGTGGTGGTTCGGTACTTCATTCTGTTTCCTGCGAGGGTTCTCGTTTTGACGATCGGATGGATAATTTTCCTTTCGTCTTTCATTCCAGTGCACTTCCTGCTGAAGGGCCATGATAAATTGAGAAAGAATTTAGAGAGGCTCTTGGTAGAGTTAATTTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCACGGACCGCGGCCCAGCATGCGGCCTAAGCAGGTCTTTGTGGCCAATCATACTTCCATGATTGATTTCATCATCTTAGAACAAATGACAGCATTTGCAGTAATTATGCAAAAGCATCCTGGATGGGTTGGATTGTTGCAAAGCACTATTTTGGAGAGCGTAGGGTGCATTTGGTTCAATCGTTCAGAGGCAAAGGATCGGGAAATTGTAACAAAGAAATTAAGGGACCATGTGCTGGGGGCAGACAATAACCCTCTCCTTATATTTCCTGAAGGAACGTGTGTAAACAATCACTACACTGTTATGTTTAAGAAGGGTGCATTTGAGCTTGGCTGCTCAGTTTGCCCTGTCGCAATCAAGTACAACAAAATTTTTGTCGATGCTTTTTGGAACAGCAAAAAGCAGTCCTTCACAATGCATCTGCTACAACTTATGACGTCATGGGCTGTTGTTTGTGATGTGTGGTATTTGGAGCCCCAAAACATTAGGCCTGGGGAAACCGCCATTGAATTTGCGGAGAGGGTCAGGGACATAATTTCTGTTCGAGCAGGACTTAAGATGGTTCCGTGGGACGGGTATCTGAAATACTCTCGGCCCAGCCCAAAGCACAGAGAGCGAAAGCAACAAAGCTTTGCTGAGACTATGCTACGACGCCTAGAGGAAAAGTAA

Protein Analysis

377

Amino Acids

43.27

Weight (kDa)

8.91

Isoelectric Point (pI)

45.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 152 - 274 8.8e-26 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 902
Acc36I ACCTGC 1 cut(s) 484
AccB1I GGYRCC 2 cut(s) 83, 167
AccB7I CCANNNNNTGG 1 cut(s) 697
AccII CGCG 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 214
AciI CCGC 5 cut(s) 470, 472, 484, 963, 977
AclWI GGATC 1 cut(s) 666
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 3 cut(s) 391, 831, 971
AcuI CTGAAG 2 cut(s) 386, 753
AcyI GRCGYC 2 cut(s) 899, 1114
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 3 cut(s) 278, 461, 824
AfiI CCNNNNNNNGG 4 cut(s) 367, 483, 697, 1034
AflII CTTAAG 1 cut(s) 1016
AflIII ACRYGT 1 cut(s) 740
AgsI TTSAA 2 cut(s) 640, 971
AjnI CCWGG 3 cut(s) 105, 580, 952
AloI GAACNNNNNNTCC 2 cut(s) 255, 287
AluBI AGCT 6 cut(s) 19, 33, 115, 426, 790, 1092
AluI AGCT 6 cut(s) 19, 33, 115, 426, 790, 1092
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 152, 1094
Alw44I GTGCAC 1 cut(s) 353
AlwI GGATC 1 cut(s) 666
Ama87I CYCGRG 1 cut(s) 11
Aor13HI TCCGGA 1 cut(s) 214
AoxI GGCC 6 cut(s) 370, 473, 485, 504, 950, 1055
ApaLI GTGCAC 1 cut(s) 353
ApeKI GCWGC 1 cut(s) 795
ApoI RAATTY 3 cut(s) 391, 831, 971
ArsI GACNNNNNNTTYG 2 cut(s) 822, 854
AspS9I GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
AsuC2I CCSGG 2 cut(s) 12, 13
AvaI CYCGRG 1 cut(s) 11
AvaII GGWCC 3 cut(s) 43, 467, 688
BaeGI GKGCMC 1 cut(s) 357
BalI TGGCCA 1 cut(s) 506
BanI GGYRCC 2 cut(s) 83, 167
BanII GRGCYC 1 cut(s) 939
Bbv12I GWGCWC 1 cut(s) 357
BbvI GCAGC 1 cut(s) 782
BccI CCATC 4 cut(s) 98, 315, 579, 1015
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 3 cut(s) 107, 582, 954
BcnI CCSGG 2 cut(s) 12, 13
BcoDI GTCTC 2 cut(s) 152, 1094
BfaI CTAG 1 cut(s) 1118
BfrI CTTAAG 1 cut(s) 1016
BfuAI ACCTGC 1 cut(s) 484
BisI GCNGC 3 cut(s) 473, 485, 796
BlsI GCNGC 3 cut(s) 474, 486, 797
Bme1390I CCNGG 5 cut(s) 12, 13, 107, 582, 954
Bme18I GGWCC 3 cut(s) 43, 467, 688
BmeT110I CYCGRG 1 cut(s) 11
BmgT120I GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
BmiI GGNNCC 7 cut(s) 85, 102, 169, 219, 689, 936, 1026
BmrFI CCNGG 5 cut(s) 12, 13, 107, 582, 954
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 4 cut(s) 446, 586, 832, 889
BmuI ACTGGG 1 cut(s) 456
Bpu10I CCTNAGC 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 13
BpuMI CCSGG 2 cut(s) 12, 13
Bsa29I ATCGAT 1 cut(s) 177
BsaHI GRCGYC 2 cut(s) 899, 1114
BsaJI CCNNGG 9 cut(s) 10, 11, 105, 106, 221, 463, 470, 953, 1028
BsaWI WCCGGW 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 4 cut(s) 367, 483, 697, 1034
Bse1I ACTGG 3 cut(s) 233, 350, 451
BseAI TCCGGA 1 cut(s) 214
BseBI CCWGG 3 cut(s) 107, 582, 954
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 9 cut(s) 10, 11, 105, 106, 221, 463, 470, 953, 1028
BseGI GGATG 4 cut(s) 90, 326, 577, 590
BseLI CCNNNNNNNGG 4 cut(s) 367, 483, 697, 1034
BseMII CTCAG 2 cut(s) 813, 1089
BseNI ACTGG 3 cut(s) 233, 350, 451
BseRI GAGGAG 1 cut(s) 16
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 1 cut(s) 782
BseYI CCCAGC 3 cut(s) 476, 697, 1058
Bsh1236I CGCG 1 cut(s) 472
Bsh1285I CGRYCG 2 cut(s) 52, 318
BshFI GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
BshNI GGYRCC 2 cut(s) 83, 167
BshVI ATCGAT 1 cut(s) 177
BsiEI CGRYCG 2 cut(s) 52, 318
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 11
BsiSI CCGG 3 cut(s) 12, 81, 215
BslFI GGGAC 3 cut(s) 701, 1004, 1046
BslI CCNNNNNNNGG 4 cut(s) 367, 483, 697, 1034
BsmAI GTCTC 2 cut(s) 152, 1094
BsmFI GGGAC 3 cut(s) 701, 1004, 1046
BsnI GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
BsoBI CYCGRG 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 357, 939
Bsp13I TCCGGA 1 cut(s) 214
Bsp143I GATC 3 cut(s) 49, 315, 658
BspACI CCGC 5 cut(s) 470, 472, 484, 963, 977
BspANI GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
BspCNI CTCAG 2 cut(s) 812, 1090
BspDI ATCGAT 1 cut(s) 177
BspEI TCCGGA 1 cut(s) 214
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 7 cut(s) 85, 102, 169, 219, 689, 936, 1026
BspMI ACCTGC 1 cut(s) 484
BspPI GGATC 1 cut(s) 666
BspT107I GGYRCC 2 cut(s) 83, 167
BspTI CTTAAG 1 cut(s) 1016
BsrI ACTGG 3 cut(s) 233, 350, 451
BssECI CCNNGG 9 cut(s) 10, 11, 105, 106, 221, 463, 470, 953, 1028
BssMI GATC 3 cut(s) 49, 315, 658
BssNI GRCGYC 2 cut(s) 899, 1114
Bst2UI CCWGG 3 cut(s) 107, 582, 954
Bst4CI ACNGT 1 cut(s) 763
BstACI GRCGYC 2 cut(s) 899, 1114
BstAFI CTTAAG 1 cut(s) 1016
BstAPI GCANNNNNTGC 1 cut(s) 361
BstC8I GCNNGC 3 cut(s) 113, 122, 482
BstDEI CTNAG 4 cut(s) 489, 538, 799, 1098
BstDSI CCRYGG 4 cut(s) 221, 463, 470, 1028
BstENI CCTNNNNNAGG 1 cut(s) 365
BstF5I GGATG 4 cut(s) 90, 326, 577, 590
BstFNI CGCG 1 cut(s) 472
BstKTI GATC 3 cut(s) 52, 318, 661
BstMAI GTCTC 2 cut(s) 152, 1094
BstMBI GATC 3 cut(s) 49, 315, 658
BstMCI CGRYCG 2 cut(s) 52, 318
BstMWI GCNNNNNNNGC 9 cut(s) 117, 121, 130, 361, 481, 490, 627, 804, 1075
BstNI CCWGG 3 cut(s) 107, 582, 954
BstNSI RCATGY 1 cut(s) 484
BstSCI CCNGG 5 cut(s) 10, 11, 105, 580, 952
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 782
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 4 cut(s) 221, 463, 470, 1028
BtsCI GGATG 4 cut(s) 90, 326, 577, 590
BtsIMutI CAGTG 2 cut(s) 357, 759
BveI ACCTGC 1 cut(s) 484
Cac8I GCNNGC 3 cut(s) 113, 122, 482
Cfr13I GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
Cfr42I CCGCGG 1 cut(s) 473
Cfr9I CCCGGG 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 177
CpoI CGGWCCG 1 cut(s) 467
CseI GACGC 1 cut(s) 1122
Csp6I GTAC 3 cut(s) 277, 460, 823
CspI CGGWCCG 1 cut(s) 467
CviAII CATG 5 cut(s) 374, 481, 520, 692, 903
CviQI GTAC 3 cut(s) 277, 460, 823
DdeI CTNAG 4 cut(s) 489, 538, 799, 1098
DpnI GATC 3 cut(s) 51, 317, 660
DpnII GATC 3 cut(s) 49, 315, 658
DraIII CACNNNGTG 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 504
Eco147I AGGCCT 1 cut(s) 952
Eco24I GRGCYC 1 cut(s) 939
Eco47I GGWCC 3 cut(s) 43, 467, 688
Eco57I CTGAAG 2 cut(s) 386, 753
Eco88I CYCGRG 1 cut(s) 11
EcoNI CCTNNNNNAGG 1 cut(s) 365
EcoRII CCWGG 3 cut(s) 105, 580, 952
EcoT22I ATGCAT 1 cut(s) 882
EcoT38I GRGCYC 1 cut(s) 939
FaeI CATG 5 cut(s) 377, 484, 523, 695, 906
FalI AAGNNNNNCTT 6 cut(s) 57, 89, 482, 514, 854, 886
FaqI GGGAC 3 cut(s) 701, 1004, 1046
FatI CATG 5 cut(s) 373, 480, 519, 691, 902
Fnu4HI GCNGC 3 cut(s) 473, 485, 796
FokI GGATG 4 cut(s) 77, 333, 564, 597
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 3 cut(s) 473, 485, 796
FspBI CTAG 1 cut(s) 1118
GluI GCNGC 3 cut(s) 473, 485, 796
GsaI CCCAGC 3 cut(s) 480, 701, 1062
HaeIII GGCC 6 cut(s) 372, 475, 487, 506, 952, 1057
HapII CCGG 3 cut(s) 12, 81, 215
HgaI GACGC 1 cut(s) 1122
Hin1I GRCGYC 2 cut(s) 899, 1114
Hin1II CATG 5 cut(s) 377, 484, 523, 695, 906
HindIII AAGCTT 2 cut(s) 113, 1090
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 12, 81, 215
Hpy166II GTNNAC 3 cut(s) 189, 355, 748
Hpy188I TCNGA 4 cut(s) 37, 320, 649, 1044
Hpy188III TCNNGA 3 cut(s) 215, 662, 731
Hpy8I GTNNAC 3 cut(s) 189, 355, 748
Hpy99I CGWCG 1 cut(s) 1116
HpyAV CCTTC 6 cut(s) 83, 87, 361, 728, 769, 880
HpyCH4III ACNGT 1 cut(s) 763
HpyCH4IV ACGT 2 cut(s) 740, 899
HpyCH4V TGCA 8 cut(s) 355, 437, 560, 571, 601, 630, 782, 880
HpyF10VI GCNNNNNNNGC 9 cut(s) 117, 121, 130, 361, 481, 490, 627, 804, 1075
HpyF3I CTNAG 4 cut(s) 489, 538, 799, 1098
HpySE526I ACGT 2 cut(s) 740, 899
Hsp92I GRCGYC 2 cut(s) 899, 1114
Hsp92II CATG 5 cut(s) 377, 484, 523, 695, 906
Kpn2I TCCGGA 1 cut(s) 214
KspI CCGCGG 1 cut(s) 473
Kzo9I GATC 3 cut(s) 49, 315, 658
LmnI GCTCC 3 cut(s) 38, 217, 934
Lsp1109I GCAGC 1 cut(s) 782
LweI GCATC 4 cut(s) 446, 586, 832, 889
MaeI CTAG 1 cut(s) 1118
MaeII ACGT 2 cut(s) 740, 899
MaeIII GTNAC 1 cut(s) 670
MalI GATC 3 cut(s) 51, 317, 660
MboI GATC 3 cut(s) 49, 315, 658
MboII GAAGA 1 cut(s) 77
MhlI GDGCHC 2 cut(s) 357, 939
MlsI TGGCCA 1 cut(s) 506
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 571
Mox20I TGGCCA 1 cut(s) 506
Mph1103I ATGCAT 1 cut(s) 882
MroI TCCGGA 1 cut(s) 214
MscI TGGCCA 1 cut(s) 506
MseI TTAA 6 cut(s) 152, 201, 416, 683, 771, 1017
MslI CAYNNNNRTG 2 cut(s) 350, 764
Msp20I TGGCCA 1 cut(s) 506
MspA1I CMGCKG 1 cut(s) 472
MspCI CTTAAG 1 cut(s) 1016
MspI CCGG 3 cut(s) 12, 81, 215
MspR9I CCNGG 5 cut(s) 12, 13, 107, 582, 954
MvaI CCWGG 3 cut(s) 107, 582, 954
MvnI CGCG 1 cut(s) 472
MwoI GCNNNNNNNGC 9 cut(s) 117, 121, 130, 361, 481, 490, 627, 804, 1075
NciI CCSGG 2 cut(s) 12, 13
NdeII GATC 3 cut(s) 49, 315, 658
NlaIII CATG 5 cut(s) 377, 484, 523, 695, 906
NlaIV GGNNCC 7 cut(s) 85, 102, 169, 219, 689, 936, 1026
NmeAIII GCCGAG 1 cut(s) 1033
NsiI ATGCAT 1 cut(s) 882
NspI RCATGY 1 cut(s) 484
PaeI GCATGC 1 cut(s) 484
PasI CCCWGGG 1 cut(s) 106
PceI AGGCCT 1 cut(s) 952
PflMI CCANNNNNTGG 1 cut(s) 697
PfoI TCCNGGA 1 cut(s) 580
PkrI GCNGC 3 cut(s) 474, 486, 797
Ple19I CGATCG 2 cut(s) 52, 318
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
Psp6I CCWGG 3 cut(s) 105, 580, 952
PspFI CCCAGC 3 cut(s) 476, 697, 1058
PspGI CCWGG 3 cut(s) 105, 580, 952
PspN4I GGNNCC 7 cut(s) 85, 102, 169, 219, 689, 936, 1026
PspPI GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
PvuI CGATCG 2 cut(s) 52, 318
RsaI GTAC 3 cut(s) 278, 461, 824
RsaNI GTAC 3 cut(s) 277, 460, 823
RseI CAYNNNNRTG 2 cut(s) 350, 764
Rsr2I CGGWCCG 1 cut(s) 467
RsrII CGGWCCG 1 cut(s) 467
SacII CCGCGG 1 cut(s) 473
SaqAI TTAA 6 cut(s) 152, 201, 416, 683, 771, 1017
SatI GCNGC 3 cut(s) 473, 485, 796
Sau3AI GATC 3 cut(s) 49, 315, 658
Sau96I GGNCC 6 cut(s) 43, 370, 467, 474, 688, 1056
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 5 cut(s) 12, 13, 107, 582, 954
SduI GDGCHC 2 cut(s) 357, 939
SfaNI GCATC 4 cut(s) 446, 586, 832, 889
Sfr303I CCGCGG 1 cut(s) 473
SgrBI CCGCGG 1 cut(s) 473
SinI GGWCC 3 cut(s) 43, 467, 688
SmaI CCCGGG 1 cut(s) 13
SmiMI CAYNNNNRTG 2 cut(s) 350, 764
SmlI CTYRAG 2 cut(s) 28, 1016
SmoI CTYRAG 2 cut(s) 28, 1016
SphI GCATGC 1 cut(s) 484
SseBI AGGCCT 1 cut(s) 952
SsiI CCGC 5 cut(s) 470, 472, 484, 963, 977
SspMI CTAG 1 cut(s) 1118
StuI AGGCCT 1 cut(s) 952
StyD4I CCNGG 5 cut(s) 10, 11, 105, 580, 952
TaaI ACNGT 1 cut(s) 763
TaiI ACGT 2 cut(s) 743, 902
TaqI TCGA 5 cut(s) 48, 63, 177, 840, 1006
TatI WGTACW 1 cut(s) 822
TauI GCSGC 2 cut(s) 475, 487
Tru1I TTAA 6 cut(s) 152, 201, 416, 683, 771, 1017
Tru9I TTAA 6 cut(s) 152, 201, 416, 683, 771, 1017
TscAI CASTG 2 cut(s) 357, 766
TseI GCWGC 1 cut(s) 795
TspDTI ATGAA 3 cut(s) 271, 334, 520
TspGWI ACGGA 3 cut(s) 170, 480, 1017
TspMI CCCGGG 1 cut(s) 11
TspRI CASTG 2 cut(s) 357, 766
Van91I CCANNNNNTGG 1 cut(s) 697
Vha464I CTTAAG 1 cut(s) 1016
VneI GTGCAC 1 cut(s) 353
VpaK11BI GGWCC 3 cut(s) 43, 467, 688
XagI CCTNNNNNAGG 1 cut(s) 365
XapI RAATTY 3 cut(s) 391, 831, 971
XceI RCATGY 1 cut(s) 484
XmaI CCCGGG 1 cut(s) 11
XspI CTAG 1 cut(s) 1118
ZraI GACGTC 1 cut(s) 900
Zsp2I ATGCAT 1 cut(s) 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.