Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002845

Physical Location & Seq

Genomic Coordinates Reverse (-)

21140312 .. 21141434

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0231300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCAACGATTGATGATGTTGCAGCAAGCTTTGCTTCGTCACTGGCTCTTCTAGGCGACGATGTGGTGGACCTTTCCAAGATGCCAGGAGCGGAAACCAGGCGCGGCTCTCAGGCCTATCTCCTTGCACGGCCACTAGCTCACACCGAAGCCGAAAGAGCACAGAAACGCTTTGTGATAGCGTTTGATCTGCGCAAGGATAGAAACAAGGTACTGAGGGGAGGCCCTTGGTATTTCCAGCGTGCTCCAGTCATCATTCATGATTATGATGGTTTGCACTCCCCCACTACAATTCAGATGAATGAGTTGTTCTTTTGGGTGAAGATGCGTAACATGCCACCGGCCTTGGAGGTAAAGAATACAATTATGAATGTTGCTTCGGTTGCAGGAAGGTTTCTGGAATGGGACCACAAGCTGTTCAAGTCATCTGGGGATGTTAGGGTTCTTGTGGCGCATCAGATCGCTAAACCTTTCTTCTTGACAAAAACCCTAAAGCTAGCGCCAGGAGTGATTGAGGAAATATCCTTCTTCTTTGAAAACCTTCTAGGTCATTGTCGAGATTGTGGTCTTATTTTTCATGAGAATGGGAATTGCCAACTTGCCGGAAAGAACATTCACCCTACCTCTGATCCAAAGCTGGGTGAGAACAAGATGGCACTGCCTCGGTCCTTTGCGGGGTTTGCGCAATGCAATTTCACCGGAGGTGCATTCCGCTTTCAAGGTGTTCAGACACCTATTTTGCCTCCTGTGGCACGCAATTTGTTTGGCTCTGGTCCTCCCATCAAATTAAGAAAACCTATGGTGCTTAGACATCATAACCTGCAGACAAGCGAGGACGCAAACAAGCTTGCTTTAGTACCTCGTACAGAACAATCTCCTTTGAAGCGAGGCAGGCCGAGCTCTCCTTTTGCCTCTCCAAAGAAGCTCAAGCTCCTGCTGGAGGAGCTTGCTGTTGGCAATTATGGCTCACCGGCACCAGCGAAGAAAGTTAAGGGCCCGGCAACAGCAATCAAGCTTTCTGCTAAGTCGTTGGGGCTTGTGGAAACGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004366 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006072 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006638 GO:0006639 GO:0006641 GO:0006651 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010154 GO:0010344 GO:0010876 GO:0012505 GO:0016020 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0019637 GO:0019752 GO:0019915 GO:0021700 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051235 GO:0052646 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098827 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

350

Amino Acids

38.57

Weight (kDa)

9.85

Isoelectric Point (pI)

47.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60620
fragaria_vesca	FvH4_2g16380 FvH4_2g16380 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680
malus_domestica	MD00G1083900.v1.1 MD10G1138100.v1.1
prunus_persica	Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1
pyrus_communis	pycom05g12970 pycom10g11750
rosa_chinensis	RchiOBHm_Chr6g0280151
rosa_laevigata	RLG00000013081 RLG00000036589
rosa_multiflora	Rmu_sc0002826.1_g000032
rosa_roxburghii	Rroxscaffold_7G00188350
rosa_rugosa	Rorug01G0184800 Rorug04G0199200 Rorug06G0130200 Rorug06G0130300 Rorug06G0215900 Rorug07G0231300
rosa_samantha	Rh2CG447400 Rh6AG240600 Rh6BG202200 Rh6BG202300 Rh6BG244300 Rh6CG245900 Rh6DG237000
rosa_wichuraiana	Rw6G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	194, 684
Acc36I	ACCTGC	1 cut(s)	828
AccB1I	GGYRCC	1 cut(s)	973
AccBSI	CCGCTC	1 cut(s)	92
AccII	CGCG	1 cut(s)	105
AciI	CCGC	4 cut(s)	92, 105, 674, 712
AclWI	GGATC	1 cut(s)	623
AcoI	YGGCCR	1 cut(s)	131
AfaI	GTAC	3 cut(s)	213, 858, 865
AfiI	CCNNNNNNNGG	3 cut(s)	638, 675, 940
AgsI	TTSAA	4 cut(s)	421, 536, 719, 883
AjnI	CCWGG	3 cut(s)	85, 98, 502
Alw21I	GWGCWC	3 cut(s)	163, 247, 902
AlwI	GGATC	1 cut(s)	623
AoxI	GGCC	6 cut(s)	114, 131, 223, 342, 893, 994
ApaI	GGGCCC	1 cut(s)	998
ApeKI	GCWGC	1 cut(s)	23
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
Asp700I	GAANNNNTTC	1 cut(s)	540
AspLEI	GCGC	5 cut(s)	105, 195, 454, 502, 685
AspS9I	GGNCC	7 cut(s)	70, 224, 406, 666, 773, 994, 995
AsuC2I	CCSGG	1 cut(s)	998
AsuHPI	GGTGA	5 cut(s)	331, 608, 653, 688, 960
AsuNHI	GCTAGC	1 cut(s)	496
AvaII	GGWCC	4 cut(s)	70, 406, 666, 773
BaeGI	GKGCMC	1 cut(s)	998
BanI	GGYRCC	1 cut(s)	973
BanII	GRGCYC	2 cut(s)	902, 998
Bbv12I	GWGCWC	3 cut(s)	163, 247, 902
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	3 cut(s)	263, 646, 788
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	3 cut(s)	87, 100, 504
BcnI	CCSGG	1 cut(s)	998
BfaI	CTAG	4 cut(s)	53, 137, 497, 545
BfmI	CTRYAG	1 cut(s)	821
BfoI	RGCGCY	1 cut(s)	503
BfuAI	ACCTGC	1 cut(s)	828
BisI	GCNGC	2 cut(s)	24, 106
BlsI	GCNGC	2 cut(s)	25, 107
Bme1390I	CCNGG	4 cut(s)	87, 100, 504, 998
Bme18I	GGWCC	4 cut(s)	70, 406, 666, 773
BmgT120I	GGNCC	7 cut(s)	70, 224, 406, 666, 773, 994, 995
BmiI	GGNNCC	3 cut(s)	407, 975, 996
BmrFI	CCNGG	4 cut(s)	87, 100, 504, 998
BmsI	GCATC	3 cut(s)	72, 315, 463
BmtI	GCTAGC	1 cut(s)	500
BpmI	CTGGAG	2 cut(s)	231, 959
BpuEI	CTTGAG	1 cut(s)	911
BpuMI	CCSGG	1 cut(s)	998
BsaJI	CCNNGG	3 cut(s)	227, 345, 662
BsaWI	WCCGGW	1 cut(s)	698
Bsc4I	CCNNNNNNNGG	3 cut(s)	638, 675, 940
Bse118I	RCCGGY	2 cut(s)	340, 970
Bse1I	ACTGG	2 cut(s)	48, 248
Bse3DI	GCAATG	1 cut(s)	692
BseBI	CCWGG	3 cut(s)	87, 100, 504
BseDI	CCNNGG	3 cut(s)	227, 345, 662
BseGI	GGATG	1 cut(s)	439
BseLI	CCNNNNNNNGG	3 cut(s)	638, 675, 940
BseMI	GCAATG	1 cut(s)	692
BseMII	CTCAG	2 cut(s)	125, 206
BseNI	ACTGG	2 cut(s)	48, 248
BseRI	GAGGAG	1 cut(s)	956
BseSI	GKGCMC	1 cut(s)	998
BseXI	GCAGC	1 cut(s)	35
BseYI	CCCAGC	1 cut(s)	637
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	6 cut(s)	116, 133, 225, 344, 895, 996
BshNI	GGYRCC	1 cut(s)	973
BsiHKAI	GWGCWC	3 cut(s)	163, 247, 902
BsiSI	CCGG	5 cut(s)	341, 603, 699, 971, 998
BslFI	GGGAC	1 cut(s)	419
BslI	CCNNNNNNNGG	3 cut(s)	638, 675, 940
BsmFI	GGGAC	1 cut(s)	419
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	6 cut(s)	116, 133, 225, 344, 895, 996
Bsp120I	GGGCCC	1 cut(s)	994
Bsp1286I	GDGCHC	4 cut(s)	163, 247, 902, 998
Bsp143I	GATC	3 cut(s)	187, 459, 628
BspACI	CCGC	4 cut(s)	92, 105, 674, 712
BspANI	GGCC	6 cut(s)	116, 133, 225, 344, 895, 996
BspCNI	CTCAG	2 cut(s)	124, 207
BspFNI	CGCG	1 cut(s)	105
BspHI	TCATGA	2 cut(s)	259, 577
BspLI	GGNNCC	3 cut(s)	407, 975, 996
BspMAI	CTGCAG	1 cut(s)	825
BspMI	ACCTGC	1 cut(s)	828
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	623
BspQI	GCTCTTC	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	973
BsrBI	CCGCTC	1 cut(s)	92
BsrDI	GCAATG	1 cut(s)	692
BsrFI	RCCGGY	2 cut(s)	340, 970
BsrI	ACTGG	2 cut(s)	48, 248
BssAI	RCCGGY	2 cut(s)	340, 970
BssECI	CCNNGG	3 cut(s)	227, 345, 662
BssMI	GATC	3 cut(s)	187, 459, 628
BssT1I	CCWWGG	2 cut(s)	227, 345
Bst2UI	CCWGG	3 cut(s)	87, 100, 504
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	7 cut(s)	28, 243, 498, 754, 849, 893, 948
BstDEI	CTNAG	4 cut(s)	111, 215, 806, 1023
BstENI	CCTNNNNNAGG	1 cut(s)	938
BstF5I	GGATG	1 cut(s)	439
BstFNI	CGCG	1 cut(s)	105
BstH2I	RGCGCY	1 cut(s)	503
BstHHI	GCGC	5 cut(s)	105, 195, 454, 502, 685
BstKTI	GATC	3 cut(s)	190, 462, 631
BstMBI	GATC	3 cut(s)	187, 459, 628
BstMWI	GCNNNNNNNGC	9 cut(s)	32, 158, 334, 383, 680, 892, 897, 943, 963
BstNI	CCWGG	3 cut(s)	87, 100, 504
BstNSI	RCATGY	1 cut(s)	337
BstSCI	CCNGG	4 cut(s)	85, 98, 502, 996
BstSFI	CTRYAG	1 cut(s)	821
BstSLI	GKGCMC	1 cut(s)	998
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	35
BsuRI	GGCC	6 cut(s)	116, 133, 225, 344, 895, 996
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	656
BtsIMutI	CAGTG	2 cut(s)	41, 656
BveI	ACCTGC	1 cut(s)	828
Cac8I	GCNNGC	7 cut(s)	28, 243, 498, 754, 849, 893, 948
CciI	TCATGA	2 cut(s)	259, 577
CfoI	GCGC	5 cut(s)	105, 195, 454, 502, 685
Cfr10I	RCCGGY	2 cut(s)	340, 970
Cfr13I	GGNCC	7 cut(s)	70, 224, 406, 666, 773, 994, 995
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	3 cut(s)	212, 857, 864
CspCI	CAANNNNNGTGG	2 cut(s)	327, 362
CviAII	CATG	4 cut(s)	260, 334, 578, 1050
CviQI	GTAC	3 cut(s)	212, 857, 864
DdeI	CTNAG	4 cut(s)	111, 215, 806, 1023
DpnI	GATC	3 cut(s)	189, 461, 630
DpnII	GATC	3 cut(s)	187, 459, 628
EaeI	YGGCCR	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Ecl136II	GAGCTC	1 cut(s)	900
Eco130I	CCWWGG	2 cut(s)	227, 345
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	902, 998
Eco47I	GGWCC	4 cut(s)	70, 406, 666, 773
Eco53kI	GAGCTC	1 cut(s)	900
EcoICRI	GAGCTC	1 cut(s)	900
EcoNI	CCTNNNNNAGG	1 cut(s)	938
EcoO109I	RGGNCCY	2 cut(s)	224, 994
EcoRII	CCWGG	3 cut(s)	85, 98, 502
EcoT14I	CCWWGG	2 cut(s)	227, 345
EcoT38I	GRGCYC	2 cut(s)	902, 998
ErhI	CCWWGG	2 cut(s)	227, 345
FaeI	CATG	4 cut(s)	263, 337, 581, 1053
FaiI	YATR	9 cut(s)	261, 267, 335, 368, 579, 800, 816, 963, 1051
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FaqI	GGGAC	1 cut(s)	419
FatI	CATG	4 cut(s)	259, 333, 577, 1049
FauI	CCCGC	1 cut(s)	667
Fnu4HI	GCNGC	2 cut(s)	24, 106
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	2 cut(s)	902, 998
Fsp4HI	GCNGC	2 cut(s)	24, 106
FspBI	CTAG	4 cut(s)	53, 137, 497, 545
FspI	TGCGCA	2 cut(s)	194, 684
GlaI	GCGC	5 cut(s)	104, 194, 453, 501, 684
GluI	GCNGC	2 cut(s)	24, 106
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	2 cut(s)	231, 959
HaeII	RGCGCY	1 cut(s)	503
HaeIII	GGCC	6 cut(s)	116, 133, 225, 344, 895, 996
HapII	CCGG	5 cut(s)	341, 603, 699, 971, 998
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	5 cut(s)	105, 195, 454, 502, 685
Hin1II	CATG	4 cut(s)	263, 337, 581, 1053
Hin6I	GCGC	5 cut(s)	103, 193, 452, 500, 683
HinP1I	GCGC	5 cut(s)	103, 193, 452, 500, 683
HindIII	AAGCTT	3 cut(s)	28, 845, 1013
HpaII	CCGG	5 cut(s)	341, 603, 699, 971, 998
HphI	GGTGA	5 cut(s)	331, 608, 653, 688, 960
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	4 cut(s)	297, 459, 628, 729
Hpy188III	TCNNGA	5 cut(s)	260, 398, 478, 557, 578
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	3 cut(s)	384, 535, 551
HpyCH4V	TGCA	7 cut(s)	23, 128, 277, 386, 690, 707, 823
HpyF10VI	GCNNNNNNNGC	9 cut(s)	32, 158, 334, 383, 680, 892, 897, 943, 963
HpyF3I	CTNAG	4 cut(s)	111, 215, 806, 1023
Hsp92II	CATG	4 cut(s)	263, 337, 581, 1053
HspAI	GCGC	5 cut(s)	103, 193, 452, 500, 683
Kzo9I	GATC	3 cut(s)	187, 459, 628
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	4 cut(s)	89, 250, 936, 943
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	3 cut(s)	72, 315, 463
MaeI	CTAG	4 cut(s)	53, 137, 497, 545
MaeIII	GTNAC	2 cut(s)	39, 329
MalI	GATC	3 cut(s)	189, 461, 630
MbiI	CCGCTC	1 cut(s)	92
MboI	GATC	3 cut(s)	187, 459, 628
MboII	GAAGA	5 cut(s)	41, 334, 466, 520, 994
MhlI	GDGCHC	4 cut(s)	163, 247, 902, 998
MluCI	AATT	7 cut(s)	291, 363, 589, 691, 757, 785, 958
MroXI	GAANNNNTTC	1 cut(s)	540
MseI	TTAA	2 cut(s)	788, 990
MslI	CAYNNNNRTG	2 cut(s)	264, 582
MspI	CCGG	5 cut(s)	341, 603, 699, 971, 998
MspR9I	CCNGG	4 cut(s)	87, 100, 504, 998
Mva1269I	GAATGC	1 cut(s)	707
MvaI	CCWGG	3 cut(s)	87, 100, 504
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	9 cut(s)	32, 158, 334, 383, 680, 892, 897, 943, 963
NciI	CCSGG	1 cut(s)	998
NdeII	GATC	3 cut(s)	187, 459, 628
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	4 cut(s)	263, 337, 581, 1053
NlaIV	GGNNCC	3 cut(s)	407, 975, 996
NmeAIII	GCCGAG	1 cut(s)	921
NmuCI	GTSAC	1 cut(s)	39
NsbI	TGCGCA	2 cut(s)	194, 684
NspI	RCATGY	1 cut(s)	337
PagI	TCATGA	2 cut(s)	259, 577
PceI	AGGCCT	1 cut(s)	116
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	1 cut(s)	707
PdmI	GAANNNNTTC	1 cut(s)	540
PkrI	GCNGC	2 cut(s)	25, 107
Psp124BI	GAGCTC	1 cut(s)	902
Psp6I	CCWGG	3 cut(s)	85, 98, 502
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	3 cut(s)	85, 98, 502
PspN4I	GGNNCC	3 cut(s)	407, 975, 996
PspOMI	GGGCCC	1 cut(s)	994
PspPI	GGNCC	7 cut(s)	70, 224, 406, 666, 773, 994, 995
PstI	CTGCAG	1 cut(s)	825
RsaI	GTAC	3 cut(s)	213, 858, 865
RsaNI	GTAC	3 cut(s)	212, 857, 864
RseI	CAYNNNNRTG	2 cut(s)	264, 582
SacI	GAGCTC	1 cut(s)	902
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	788, 990
SatI	GCNGC	2 cut(s)	24, 106
Sau3AI	GATC	3 cut(s)	187, 459, 628
Sau96I	GGNCC	7 cut(s)	70, 224, 406, 666, 773, 994, 995
ScrFI	CCNGG	4 cut(s)	87, 100, 504, 998
SduI	GDGCHC	4 cut(s)	163, 247, 902, 998
SfaNI	GCATC	3 cut(s)	72, 315, 463
SfcI	CTRYAG	1 cut(s)	821
SinI	GGWCC	4 cut(s)	70, 406, 666, 773
SmiMI	CAYNNNNRTG	2 cut(s)	264, 582
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
Sse9I	AATT	7 cut(s)	291, 363, 589, 691, 757, 785, 958
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	4 cut(s)	92, 105, 674, 712
SspMI	CTAG	4 cut(s)	53, 137, 497, 545
SstI	GAGCTC	1 cut(s)	902
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	4 cut(s)	85, 98, 502, 996
StyI	CCWWGG	2 cut(s)	227, 345
TaqI	TCGA	1 cut(s)	556
TaqII	GACCGA	1 cut(s)	654
TasI	AATT	7 cut(s)	291, 363, 589, 691, 757, 785, 958
TauI	GCSGC	1 cut(s)	108
Tru1I	TTAA	2 cut(s)	788, 990
Tru9I	TTAA	2 cut(s)	788, 990
TscAI	CASTG	2 cut(s)	48, 663
TseFI	GTSAC	1 cut(s)	39
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	39
TspDTI	ATGAA	4 cut(s)	248, 314, 383, 566
TspRI	CASTG	2 cut(s)	48, 663
VpaK11BI	GGWCC	4 cut(s)	70, 406, 666, 773
XagI	CCTNNNNNAGG	1 cut(s)	938
XceI	RCATGY	1 cut(s)	337
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	4 cut(s)	53, 137, 497, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.