Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002845

Physical Location & Seq

Genomic Coordinates Reverse (-)

60618037 .. 60620552

Gene Structure 2516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG447400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGTTGGATGATCAGGACTCGTTCACGCGGTGCTTTAAGTCTAATCCTCCGGAGCCGTGGAATTGGAATATCTATTTGTTCCCCTTGTGGTGTTTCGGAGTGGTGATTCGATACTTTGTTCTATTTTTGGCAAGGGTACTGGTCTTGACTATTGGATGGATAATTTTCCTTTCGGCATTCATTCCTGTGCACTTCCTACTCAAAGGCCATGAAAAATTGAGAAAAAATTTAGAGAGATGTTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGCGGTCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCTGGAACAAATGACGGCATTTGCTATAATTATGCAAAAGTATCCTGGATGGGTTGGATTGTTGCAAAAAACTATTTTGGAGAGTGTGGGATGTATCTGGTTCAATCGTTCAGAATCAAAGGATCGGGAAATTGTTGCGAAGGATCATGTGGTGGGGCCTGACAATAACCCTGTCCTTATATTTCCCGAAGGAACTTGTGTAAACAATCACTACACTGTTATGTTTAAGAAGGGTGCATTTGCTCAGTTTGCCCTGTCGCAATTAAGTACAATAAAATTTTCGTTGATGCGTTCTGGAATAGCAGAAAGCAGTCCTTCACAATGCATCTGCTACAGCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004366 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006072 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006638 GO:0006639 GO:0006641 GO:0006651 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010154 GO:0010344 GO:0010876 GO:0012505 GO:0016020 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0019637 GO:0019752 GO:0019915 GO:0021700 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051235 GO:0052646 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098827 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

237

Amino Acids

27.22

Weight (kDa)

8.9

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	97 - 206	7.7e-21	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60620
fragaria_vesca	FvH4_2g16380 FvH4_2g16380 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680
malus_domestica	MD00G1083900.v1.1 MD10G1138100.v1.1
prunus_persica	Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1
pyrus_communis	pycom05g12970 pycom10g11750
rosa_chinensis	RchiOBHm_Chr6g0280151
rosa_laevigata	RLG00000013081 RLG00000036589
rosa_multiflora	Rmu_sc0002826.1_g000032
rosa_roxburghii	Rroxscaffold_7G00188350
rosa_rugosa	Rorug01G0184800 Rorug04G0199200 Rorug06G0130200 Rorug06G0130300 Rorug06G0215900 Rorug07G0231300
rosa_samantha	Rh2CG447400 Rh6AG240600 Rh6BG202200 Rh6BG202300 Rh6BG244300 Rh6CG245900 Rh6DG237000
rosa_wichuraiana	Rw6G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	2 cut(s)	28, 319
AclWI	GGATC	2 cut(s)	501, 522
AcoI	YGGCCR	1 cut(s)	339
AcsI	RAATTY	2 cut(s)	226, 647
AdeI	CACNNNGTG	1 cut(s)	30
AfaI	GTAC	3 cut(s)	138, 296, 640
AgsI	TTSAA	1 cut(s)	475
AjnI	CCWGG	2 cut(s)	372, 415
AluBI	AGCT	2 cut(s)	261, 708
AluI	AGCT	2 cut(s)	261, 708
Alw21I	GWGCWC	1 cut(s)	192
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	501, 522
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	3 cut(s)	205, 339, 527
ApaLI	GTGCAC	1 cut(s)	188
ApoI	RAATTY	2 cut(s)	226, 647
AspS9I	GGNCC	2 cut(s)	302, 527
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	2 cut(s)	150, 414
BceAI	ACGGC	2 cut(s)	40, 402
BciT130I	CCWGG	2 cut(s)	374, 417
BciVI	GTATCC	1 cut(s)	423
BclI	TGATCA	1 cut(s)	10
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	703
BfuAI	ACCTGC	1 cut(s)	319
BfuI	GTATCC	1 cut(s)	423
Bme1390I	CCNGG	2 cut(s)	374, 417
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	302, 527
BmiI	GGNNCC	2 cut(s)	54, 528
BmrFI	CCNGG	2 cut(s)	374, 417
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	281, 648, 705
BmuI	ACTGGG	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	56, 298
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse1I	ACTGG	2 cut(s)	144, 286
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	2 cut(s)	374, 417
BseDI	CCNNGG	2 cut(s)	56, 298
BseGI	GGATG	5 cut(s)	13, 161, 369, 425, 467
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	2 cut(s)	144, 286
BseSI	GKGCMC	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	3 cut(s)	207, 341, 529
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	3 cut(s)	207, 341, 529
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	10, 493, 514
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	2 cut(s)	28, 319
BspANI	GGCC	3 cut(s)	207, 341, 529
BspCNI	CTCAG	1 cut(s)	628
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	2 cut(s)	54, 528
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	501, 522
BsrI	ACTGG	2 cut(s)	144, 286
BssECI	CCNNGG	2 cut(s)	56, 298
BssMI	GATC	3 cut(s)	10, 493, 514
BssT1I	CCWWGG	1 cut(s)	298
Bst2UI	CCWGG	2 cut(s)	374, 417
Bst4CI	ACNGT	1 cut(s)	589
BstDEI	CTNAG	1 cut(s)	615
BstDSI	CCRYGG	2 cut(s)	56, 298
BstF5I	GGATG	5 cut(s)	13, 161, 369, 425, 467
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	3 cut(s)	13, 496, 517
BstMBI	GATC	3 cut(s)	10, 493, 514
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 325, 620
BstNI	CCWGG	2 cut(s)	374, 417
BstSCI	CCNGG	2 cut(s)	372, 415
BstSFI	CTRYAG	1 cut(s)	703
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	28
BsuI	GTATCC	1 cut(s)	423
BsuRI	GGCC	3 cut(s)	207, 341, 529
BtgI	CCRYGG	2 cut(s)	56, 298
BtsCI	GGATG	5 cut(s)	13, 161, 369, 425, 467
BtsIMutI	CAGTG	1 cut(s)	585
BveI	ACCTGC	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	302, 527
Csp6I	GTAC	3 cut(s)	137, 295, 639
CviAII	CATG	3 cut(s)	209, 299, 518
CviJI	RGCY	7 cut(s)	55, 207, 261, 310, 341, 529, 708
CviKI_1	RGCY	7 cut(s)	55, 207, 261, 310, 341, 529, 708
CviQI	GTAC	3 cut(s)	137, 295, 639
DdeI	CTNAG	1 cut(s)	615
DpnI	GATC	3 cut(s)	12, 495, 516
DpnII	GATC	3 cut(s)	10, 493, 514
DraIII	CACNNNGTG	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	372, 415
EcoT14I	CCWWGG	1 cut(s)	298
EcoT22I	ATGCAT	1 cut(s)	698
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	3 cut(s)	212, 302, 521
FalI	AAGNNNNNCTT	2 cut(s)	670, 702
FatI	CATG	3 cut(s)	208, 298, 517
FbaI	TGATCA	1 cut(s)	10
FokI	GGATG	5 cut(s)	20, 168, 356, 432, 474
FspBI	CTAG	1 cut(s)	312
HaeIII	GGCC	3 cut(s)	207, 341, 529
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	3 cut(s)	212, 302, 521
HinfI	GANTC	3 cut(s)	17, 106, 485
HpaII	CCGG	1 cut(s)	50
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	24, 190, 574
Hpy188I	TCNGA	2 cut(s)	98, 484
Hpy188III	TCNNGA	6 cut(s)	14, 50, 145, 497, 557, 666
Hpy8I	GTNNAC	3 cut(s)	24, 190, 574
HpyAV	CCTTC	4 cut(s)	505, 554, 595, 696
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	6 cut(s)	190, 272, 406, 436, 608, 696
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 325, 620
HpyF3I	CTNAG	1 cut(s)	615
Hsp92II	CATG	3 cut(s)	212, 302, 521
Kpn2I	TCCGGA	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	10, 493, 514
LmnI	GCTCC	1 cut(s)	52
LweI	GCATC	3 cut(s)	281, 648, 705
MaeI	CTAG	1 cut(s)	312
MalI	GATC	3 cut(s)	12, 495, 516
MboI	GATC	3 cut(s)	10, 493, 514
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	341
MluCI	AATT	8 cut(s)	61, 162, 215, 226, 399, 501, 632, 647
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	1 cut(s)	57
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	1 cut(s)	698
MroI	TCCGGA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	4 cut(s)	36, 251, 597, 635
MslI	CAYNNNNRTG	2 cut(s)	185, 590
Msp20I	TGGCCA	1 cut(s)	341
MspI	CCGG	1 cut(s)	50
MspR9I	CCNGG	2 cut(s)	374, 417
Mva1269I	GAATGC	1 cut(s)	176
MvaI	CCWGG	2 cut(s)	374, 417
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	316, 325, 620
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	3 cut(s)	10, 493, 514
NlaIII	CATG	3 cut(s)	212, 302, 521
NlaIV	GGNNCC	2 cut(s)	54, 528
NsiI	ATGCAT	1 cut(s)	698
PctI	GAATGC	1 cut(s)	176
PfeI	GAWTC	2 cut(s)	106, 485
PfoI	TCCNGGA	2 cut(s)	372, 415
PleI	GAGTC	1 cut(s)	11
PpsI	GAGTC	1 cut(s)	11
Psp6I	CCWGG	2 cut(s)	372, 415
PspGI	CCWGG	2 cut(s)	372, 415
PspN4I	GGNNCC	2 cut(s)	54, 528
PspPI	GGNCC	2 cut(s)	302, 527
RsaI	GTAC	3 cut(s)	138, 296, 640
RsaNI	GTAC	3 cut(s)	137, 295, 639
RseI	CAYNNNNRTG	2 cut(s)	185, 590
SaqAI	TTAA	4 cut(s)	36, 251, 597, 635
Sau3AI	GATC	3 cut(s)	10, 493, 514
Sau96I	GGNCC	2 cut(s)	302, 527
SchI	GAGTC	1 cut(s)	11
ScrFI	CCNGG	2 cut(s)	374, 417
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	3 cut(s)	263, 333, 710
SfaNI	GCATC	3 cut(s)	281, 648, 705
SfcI	CTRYAG	1 cut(s)	703
SinI	GGWCC	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	185, 590
Sse9I	AATT	8 cut(s)	61, 162, 215, 226, 399, 501, 632, 647
SsiI	CCGC	2 cut(s)	28, 319
SspMI	CTAG	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	372, 415
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	1 cut(s)	589
TaqI	TCGA	1 cut(s)	109
TasI	AATT	8 cut(s)	61, 162, 215, 226, 399, 501, 632, 647
TatI	WGTACW	1 cut(s)	638
TfiI	GAWTC	2 cut(s)	106, 485
Tru1I	TTAA	4 cut(s)	36, 251, 597, 635
Tru9I	TTAA	4 cut(s)	36, 251, 597, 635
TscAI	CASTG	1 cut(s)	592
TspDTI	ATGAA	3 cut(s)	169, 225, 355
TspRI	CASTG	1 cut(s)	592
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	2 cut(s)	226, 647
XspI	CTAG	1 cut(s)	312
Zsp2I	ATGCAT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.