Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002845

Physical Location & Seq

Genomic Coordinates Forward (+)

41403787 .. 41407737

Gene Structure 3951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG245900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGTTGGATGAACAGGACTCGTTCACGCGGTGCTTTAAGTCGAATCCTCCGGAGCCGTGGAATTGGAATATCTATTTGTTCCCTTTGTGGTGTTTCGGAGTGGTGATTCGATACTTTGTTCTATTTCCGGCAAGGGTACTGGTCTTGACTATTGGATGGATAATTTTCCTTTCGGCATTCATTCCTGTGCACTTCCTACTCAAAGGCCATGAAAAATTGAGAAAAAATTTAGAGAGATGTTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGCGGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCTGGAACAAATGACGGCATTTGCTGTAATTATGCAAAAGCATCCTGGATGGGTTGGATTGTTGCAAAAAACTATTTTGGAGAGTGTGGGATGTATCTGGTTCAATCGTTCAGAATCAAAGGATCGGGAAATTGTTGCGAAGAAATTAAGGGATCATGTGGTGGGGCCTGACAATAACCCTCTCCTTATATTTCCCGAAGGAACTTGTGTAAACAATCACTACACTGTTATGTTTAAGAAGGGTGCATTTGAGCTTGGCTGCTCAGTTTGCCCTGTCGCAATTAAGTACAATAAAATTTTCGTTGATGCATTCTGGAACAGCAGAAAGCAGTCCTTCACAATGCATCTGCTACAGCTTATGACATCATGGGCTGTTGTTTGTGATGTGTGGTATTTGGAGCCTGAAAATATGAAGCCTGGGGAGACTGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTGTTCGAGCAGGACTTAAGAAGGTCCCATGGGATGGGTATCTGAAATACTCTCGCCCTAGCCCAAAGCATAGAGAGAGGAAGCAACAAAGCTTTGCCGAGTCTATGCTCCGACGCCTCGAGGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004366 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006072 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006638 GO:0006639 GO:0006641 GO:0006651 GO:0006793 GO:0006796 GO:0007275 GO:0008150 GO:0008152 GO:0008374 GO:0008610 GO:0009058 GO:0009555 GO:0009791 GO:0009987 GO:0010152 GO:0010154 GO:0010344 GO:0010876 GO:0012505 GO:0016020 GO:0016053 GO:0016740 GO:0016746 GO:0016747 GO:0019432 GO:0019637 GO:0019752 GO:0019915 GO:0021700 GO:0022414 GO:0031984 GO:0032501 GO:0032502 GO:0032787 GO:0033036 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043621 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046339 GO:0046394 GO:0046460 GO:0046463 GO:0046486 GO:0048229 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051235 GO:0052646 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0071944 GO:0072330 GO:0098827 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110

Pfam Domains

Protein Families

Acyltransferase

Protein Analysis

321

Amino Acids

37.46

Weight (kDa)

9.28

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acyltransferase	PF01553	97 - 219	2.9e-25	Acyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G60620
fragaria_vesca	FvH4_2g16380 FvH4_2g16380 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680 FvH4_5g27680
malus_domestica	MD00G1083900.v1.1 MD10G1138100.v1.1
prunus_persica	Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1 Prupe.8G176600_v2.0.a1
pyrus_communis	pycom05g12970 pycom10g11750
rosa_chinensis	RchiOBHm_Chr6g0280151
rosa_laevigata	RLG00000013081 RLG00000036589
rosa_multiflora	Rmu_sc0002826.1_g000032
rosa_roxburghii	Rroxscaffold_7G00188350
rosa_rugosa	Rorug01G0184800 Rorug04G0199200 Rorug06G0130200 Rorug06G0130300 Rorug06G0215900 Rorug07G0231300
rosa_samantha	Rh2CG447400 Rh6AG240600 Rh6BG202200 Rh6BG202300 Rh6BG244300 Rh6CG245900 Rh6DG237000
rosa_wichuraiana	Rw6G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	953
Acc36I	ACCTGC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	869
AccII	CGCG	1 cut(s)	28
AccIII	TCCGGA	1 cut(s)	49
AciI	CCGC	2 cut(s)	28, 319
AclWI	GGATC	2 cut(s)	501, 531
AcoI	YGGCCR	2 cut(s)	320, 339
AcsI	RAATTY	3 cut(s)	226, 666, 806
AcyI	GRCGYC	1 cut(s)	949
AdeI	CACNNNGTG	1 cut(s)	30
AfaI	GTAC	3 cut(s)	138, 296, 659
AfiI	CCNNNNNNNGG	1 cut(s)	869
AflII	CTTAAG	1 cut(s)	851
AgsI	TTSAA	2 cut(s)	475, 806
AjnI	CCWGG	3 cut(s)	372, 415, 787
AluBI	AGCT	4 cut(s)	261, 625, 727, 927
AluI	AGCT	4 cut(s)	261, 625, 727, 927
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	788
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	501, 531
Ama87I	CYCGRG	1 cut(s)	953
Aor13HI	TCCGGA	1 cut(s)	49
AoxI	GGCC	4 cut(s)	205, 320, 339, 536
ApaLI	GTGCAC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	630
ApoI	RAATTY	3 cut(s)	226, 666, 806
AspS9I	GGNCC	3 cut(s)	302, 536, 859
AsuHPI	GGTGA	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	953
AvaII	GGWCC	2 cut(s)	302, 859
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	192
BbvI	GCAGC	1 cut(s)	617
BccI	CCATC	3 cut(s)	150, 414, 863
BceAI	ACGGC	2 cut(s)	40, 402
BciT130I	CCWGG	3 cut(s)	374, 417, 789
BcoDI	GTCTC	1 cut(s)	788
BfaI	CTAG	2 cut(s)	312, 894
BfmI	CTRYAG	1 cut(s)	722
BfrI	CTTAAG	1 cut(s)	851
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	2 cut(s)	320, 631
BlsI	GCNGC	2 cut(s)	321, 632
Bme1390I	CCNGG	3 cut(s)	374, 417, 789
Bme18I	GGWCC	2 cut(s)	302, 859
BmeT110I	CYCGRG	1 cut(s)	953
BmgT120I	GGNCC	3 cut(s)	302, 536, 859
BmiI	GGNNCC	4 cut(s)	54, 537, 771, 861
BmrFI	CCNGG	3 cut(s)	374, 417, 789
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	4 cut(s)	281, 421, 667, 724
BmuI	ACTGGG	1 cut(s)	291
BsaBI	GATNNNNATC	1 cut(s)	873
BsaHI	GRCGYC	1 cut(s)	949
BsaJI	CCNNGG	4 cut(s)	56, 298, 788, 863
BsaWI	WCCGGW	1 cut(s)	49
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	869
Bse1I	ACTGG	2 cut(s)	144, 286
Bse8I	GATNNNNATC	1 cut(s)	873
BseAI	TCCGGA	1 cut(s)	49
BseBI	CCWGG	3 cut(s)	374, 417, 789
BseDI	CCNNGG	4 cut(s)	56, 298, 788, 863
BseGI	GGATG	7 cut(s)	13, 161, 369, 412, 425, 467, 874
BseJI	GATNNNNATC	1 cut(s)	873
BseLI	CCNNNNNNNGG	1 cut(s)	869
BseMII	CTCAG	1 cut(s)	648
BseNI	ACTGG	2 cut(s)	144, 286
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	28
BshFI	GGCC	4 cut(s)	207, 322, 341, 538
BsiHKAI	GWGCWC	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	953
BsiSI	CCGG	2 cut(s)	50, 128
BslFI	GGGAC	2 cut(s)	839, 845
BslI	CCNNNNNNNGG	1 cut(s)	869
BsmAI	GTCTC	1 cut(s)	788
BsmFI	GGGAC	2 cut(s)	839, 845
BsmI	GAATGC	2 cut(s)	176, 680
BsnI	GGCC	4 cut(s)	207, 322, 341, 538
BsoBI	CYCGRG	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	493, 523
Bsp19I	CCATGG	2 cut(s)	298, 863
BspACI	CCGC	2 cut(s)	28, 319
BspANI	GGCC	4 cut(s)	207, 322, 341, 538
BspCNI	CTCAG	1 cut(s)	647
BspEI	TCCGGA	1 cut(s)	49
BspFNI	CGCG	1 cut(s)	28
BspLI	GGNNCC	4 cut(s)	54, 537, 771, 861
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	2 cut(s)	501, 531
BspTI	CTTAAG	1 cut(s)	851
BsrI	ACTGG	2 cut(s)	144, 286
BssECI	CCNNGG	4 cut(s)	56, 298, 788, 863
BssMI	GATC	2 cut(s)	493, 523
BssNI	GRCGYC	1 cut(s)	949
BssT1I	CCWWGG	2 cut(s)	298, 863
Bst2UI	CCWGG	3 cut(s)	374, 417, 789
Bst4CI	ACNGT	1 cut(s)	598
BstACI	GRCGYC	1 cut(s)	949
BstAFI	CTTAAG	1 cut(s)	851
BstDEI	CTNAG	1 cut(s)	634
BstDSI	CCRYGG	3 cut(s)	56, 298, 863
BstF5I	GGATG	7 cut(s)	13, 161, 369, 412, 425, 467, 874
BstFNI	CGCG	1 cut(s)	28
BstKTI	GATC	2 cut(s)	496, 526
BstMAI	GTCTC	1 cut(s)	788
BstMBI	GATC	2 cut(s)	493, 523
BstMWI	GCNNNNNNNGC	3 cut(s)	316, 325, 639
BstNI	CCWGG	3 cut(s)	374, 417, 789
BstSCI	CCNGG	3 cut(s)	372, 415, 787
BstSFI	CTRYAG	1 cut(s)	722
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	1 cut(s)	28
BstV1I	GCAGC	1 cut(s)	617
BsuRI	GGCC	4 cut(s)	207, 322, 341, 538
BtgI	CCRYGG	3 cut(s)	56, 298, 863
BtsCI	GGATG	7 cut(s)	13, 161, 369, 412, 425, 467, 874
BtsIMutI	CAGTG	1 cut(s)	594
BveI	ACCTGC	1 cut(s)	319
Cfr13I	GGNCC	3 cut(s)	302, 536, 859
CseI	GACGC	1 cut(s)	957
Csp6I	GTAC	3 cut(s)	137, 295, 658
CviAII	CATG	5 cut(s)	209, 299, 527, 738, 864
CviQI	GTAC	3 cut(s)	137, 295, 658
DdeI	CTNAG	1 cut(s)	634
DpnI	GATC	2 cut(s)	495, 525
DpnII	GATC	2 cut(s)	493, 523
DraIII	CACNNNGTG	1 cut(s)	30
EaeI	YGGCCR	2 cut(s)	320, 339
Eco130I	CCWWGG	2 cut(s)	298, 863
Eco47I	GGWCC	2 cut(s)	302, 859
Eco88I	CYCGRG	1 cut(s)	953
EcoO109I	RGGNCCY	2 cut(s)	536, 859
EcoRII	CCWGG	3 cut(s)	372, 415, 787
EcoT14I	CCWWGG	2 cut(s)	298, 863
EcoT22I	ATGCAT	2 cut(s)	682, 717
ErhI	CCWWGG	2 cut(s)	298, 863
FaeI	CATG	5 cut(s)	212, 302, 530, 741, 867
FalI	AAGNNNNNCTT	2 cut(s)	689, 721
FaqI	GGGAC	2 cut(s)	839, 845
FatI	CATG	5 cut(s)	208, 298, 526, 737, 863
Fnu4HI	GCNGC	2 cut(s)	320, 631
FokI	GGATG	7 cut(s)	20, 168, 356, 399, 432, 474, 881
Fsp4HI	GCNGC	2 cut(s)	320, 631
FspBI	CTAG	2 cut(s)	312, 894
GluI	GCNGC	2 cut(s)	320, 631
HaeIII	GGCC	4 cut(s)	207, 322, 341, 538
HapII	CCGG	2 cut(s)	50, 128
HgaI	GACGC	1 cut(s)	957
Hin1I	GRCGYC	1 cut(s)	949
Hin1II	CATG	5 cut(s)	212, 302, 530, 741, 867
HindIII	AAGCTT	1 cut(s)	925
HinfI	GANTC	5 cut(s)	17, 43, 106, 485, 935
HpaII	CCGG	2 cut(s)	50, 128
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	24, 190, 583
Hpy188I	TCNGA	4 cut(s)	98, 484, 879, 947
Hpy188III	TCNNGA	5 cut(s)	50, 145, 497, 566, 685
Hpy8I	GTNNAC	3 cut(s)	24, 190, 583
Hpy99I	CGWCG	1 cut(s)	951
HpyAV	CCTTC	4 cut(s)	563, 604, 715, 850
HpyCH4III	ACNGT	1 cut(s)	598
HpyCH4V	TGCA	8 cut(s)	190, 272, 406, 436, 617, 680, 715, 812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	316, 325, 639
HpyF3I	CTNAG	1 cut(s)	634
Hsp92I	GRCGYC	1 cut(s)	949
Hsp92II	CATG	5 cut(s)	212, 302, 530, 741, 867
Kpn2I	TCCGGA	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	493, 523
LmnI	GCTCC	3 cut(s)	52, 769, 948
Lsp1109I	GCAGC	1 cut(s)	617
LweI	GCATC	4 cut(s)	281, 421, 667, 724
MaeI	CTAG	2 cut(s)	312, 894
MalI	GATC	2 cut(s)	495, 525
MboI	GATC	2 cut(s)	493, 523
MboII	GAAGA	1 cut(s)	523
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	341
MlyI	GAGTC	2 cut(s)	11, 944
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	6 cut(s)	57, 561, 810, 906, 949, 962
Mox20I	TGGCCA	1 cut(s)	341
Mph1103I	ATGCAT	2 cut(s)	682, 717
MroI	TCCGGA	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	341
MseI	TTAA	6 cut(s)	36, 251, 518, 606, 654, 852
MslI	CAYNNNNRTG	2 cut(s)	185, 599
Msp20I	TGGCCA	1 cut(s)	341
MspCI	CTTAAG	1 cut(s)	851
MspI	CCGG	2 cut(s)	50, 128
MspR9I	CCNGG	3 cut(s)	374, 417, 789
Mva1269I	GAATGC	2 cut(s)	176, 680
MvaI	CCWGG	3 cut(s)	374, 417, 789
MvnI	CGCG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	316, 325, 639
NcoI	CCATGG	2 cut(s)	298, 863
NdeII	GATC	2 cut(s)	493, 523
NlaIII	CATG	5 cut(s)	212, 302, 530, 741, 867
NlaIV	GGNNCC	4 cut(s)	54, 537, 771, 861
NmeAIII	GCCGAG	1 cut(s)	958
NsiI	ATGCAT	2 cut(s)	682, 717
PaeR7I	CTCGAG	1 cut(s)	953
PctI	GAATGC	2 cut(s)	176, 680
PfeI	GAWTC	3 cut(s)	43, 106, 485
PflMI	CCANNNNNTGG	1 cut(s)	869
PfoI	TCCNGGA	2 cut(s)	372, 415
PkrI	GCNGC	2 cut(s)	321, 632
PleI	GAGTC	2 cut(s)	11, 943
PpsI	GAGTC	2 cut(s)	11, 943
PpuMI	RGGWCCY	1 cut(s)	859
Psp5II	RGGWCCY	1 cut(s)	859
Psp6I	CCWGG	3 cut(s)	372, 415, 787
PspGI	CCWGG	3 cut(s)	372, 415, 787
PspN4I	GGNNCC	4 cut(s)	54, 537, 771, 861
PspPI	GGNCC	3 cut(s)	302, 536, 859
PspPPI	RGGWCCY	1 cut(s)	859
PspXI	VCTCGAGB	1 cut(s)	953
RsaI	GTAC	3 cut(s)	138, 296, 659
RsaNI	GTAC	3 cut(s)	137, 295, 658
RseI	CAYNNNNRTG	2 cut(s)	185, 599
SaqAI	TTAA	6 cut(s)	36, 251, 518, 606, 654, 852
SatI	GCNGC	2 cut(s)	320, 631
Sau3AI	GATC	2 cut(s)	493, 523
Sau96I	GGNCC	3 cut(s)	302, 536, 859
SchI	GAGTC	2 cut(s)	11, 944
ScrFI	CCNGG	3 cut(s)	374, 417, 789
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	6 cut(s)	263, 333, 627, 729, 861, 929
SfaNI	GCATC	4 cut(s)	281, 421, 667, 724
SfcI	CTRYAG	1 cut(s)	722
Sfr274I	CTCGAG	1 cut(s)	953
SinI	GGWCC	2 cut(s)	302, 859
SlaI	CTCGAG	1 cut(s)	953
SmiMI	CAYNNNNRTG	2 cut(s)	185, 599
SmlI	CTYRAG	2 cut(s)	851, 953
SmoI	CTYRAG	2 cut(s)	851, 953
SsiI	CCGC	2 cut(s)	28, 319
SspMI	CTAG	2 cut(s)	312, 894
StyD4I	CCNGG	3 cut(s)	372, 415, 787
StyI	CCWWGG	2 cut(s)	298, 863
TaaI	ACNGT	1 cut(s)	598
TaqI	TCGA	4 cut(s)	41, 109, 841, 954
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	322
TfiI	GAWTC	3 cut(s)	43, 106, 485
Tru1I	TTAA	6 cut(s)	36, 251, 518, 606, 654, 852
Tru9I	TTAA	6 cut(s)	36, 251, 518, 606, 654, 852
TscAI	CASTG	1 cut(s)	601
TseI	GCWGC	1 cut(s)	630
TspDTI	ATGAA	5 cut(s)	24, 169, 225, 355, 797
TspRI	CASTG	1 cut(s)	601
Van91I	CCANNNNNTGG	1 cut(s)	869
Vha464I	CTTAAG	1 cut(s)	851
VneI	GTGCAC	1 cut(s)	188
VpaK11BI	GGWCC	2 cut(s)	302, 859
XapI	RAATTY	3 cut(s)	226, 666, 806
XhoI	CTCGAG	1 cut(s)	953
XspI	CTAG	2 cut(s)	312, 894
Zsp2I	ATGCAT	2 cut(s)	682, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.