Rroxscaffold_7G00188350

Glycerol-3-phosphate acyltransferase 3-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
27913000 .. 27918610
5611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188350.1

Sequence Viewer

Length: 1047 bp
ATGAGCGTCCCCGGAAAGCTGAAATCCTCGAGCTCCGAATTGGACCTGGATCGGCCCAACCTCGAGGACTACCTCCCTTCCGGAGCCTCCATCCAACAAGAACCCGACGGCAACCTTCGCCTGCGTGATTTGCTTGATATCTCTCCCGCCCTCGCCGAGGCCGCCGGTGCCATTATCGATGACTCATTCACGCGGTGCTTTAAGTCGAATCCTCCGGAGCCGTGGAATTGGAATATTTATTTGTTCCCTTTGTGGTGTTTCGGAGTGGTGATTCGATACTTTGTTCTATTTCCGGCAAGGTTAGAGCCTCTATCTTCTGCTTACATATTCAAATTTCCATGCATTTATGCCATCAAGCTACGAAATGTGCTGAGATGTTTGGTGGAGTTAATGTGTAGCTTCTTTGTTGCATCTTGGACTGGGGTTGTGAAGTACCATGGACCAAAGCCTAGTATGCGGCCAAAGCAGGTTTTTGTGGCCAATCATACTTCTATGATTGATTTCATCATCCTGGAACAAATGACGGCATTTGCTGTAATTATGCAAAAGCATCCTGGATGGGTTGAATCGAAGGATCGGGAAATTGTTGCGAAGAAATTAAGGGATCATGTGGTGGGGCCTGACAATAACCCTCTCCTTATATTTCCTGAAGGAACTTGTGTAAACAATCACTACACTGTTATGTTTAAGAAGGGTGCATTTGAGCTTGGCTGCTCAGTTTGCCCTGTCGCAATCAAGTACAATAAAATTTTCGTTGATGCATTCTGGAACAGCAGAAAGCAGTCCTTCACAATGCATCTGCTACAGCTTATGACATCATGGGCTGTTGTTTGTGATGTGTGGTATTTGGAGCCCCAAAATATGAAGCCTGGGGAGACTGCCATTGAATTTGCAGAGAGGGTCAGGGACATAATTTCTGTTCGAGCAGGACTTAAGAAGGTCCCGTGGGATGGGTATCTGAAATACTCACGCCCTAGCCCAAAGCATAGAGAGAGGAAGCAACAGAGCTTTGCCGAGTCTATGCTCCGACGCCTCGAGGAGAAGTGA

Protein Analysis

348

Amino Acids

40.0

Weight (kDa)

8.94

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acyltransferase PF01553 190 - 246 2.4e-09 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 2 cut(s) 62, 1034
Acc36I ACCTGC 1 cut(s) 457
AccB1I GGYRCC 1 cut(s) 167
AccII CGCG 1 cut(s) 193
AccIII TCCGGA 2 cut(s) 80, 214
AciI CCGC 4 cut(s) 147, 162, 193, 457
AclWI GGATC 3 cut(s) 57, 582, 612
AcoI YGGCCR 2 cut(s) 458, 477
AcsI RAATTY 3 cut(s) 332, 747, 887
AcuI CTGAAG 1 cut(s) 669
AcyI GRCGYC 1 cut(s) 1030
AdeI CACNNNGTG 1 cut(s) 195
AfaI GTAC 2 cut(s) 434, 740
AfiI CCNNNNNNNGG 2 cut(s) 157, 950
AflII CTTAAG 1 cut(s) 932
AgsI TTSAA 3 cut(s) 331, 566, 887
AjnI CCWGG 4 cut(s) 45, 510, 553, 868
AluBI AGCT 7 cut(s) 19, 33, 358, 399, 706, 808, 1008
AluI AGCT 7 cut(s) 19, 33, 358, 399, 706, 808, 1008
Alw21I GWGCWC 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 869
AlwI GGATC 3 cut(s) 57, 582, 612
Ama87I CYCGRG 3 cut(s) 28, 62, 1034
Aor13HI TCCGGA 2 cut(s) 80, 214
AoxI GGCC 5 cut(s) 53, 159, 458, 477, 617
ApeKI GCWGC 1 cut(s) 711
ApoI RAATTY 3 cut(s) 332, 747, 887
AspS9I GGNCC 5 cut(s) 43, 54, 440, 617, 940
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 280
AvaI CYCGRG 3 cut(s) 28, 62, 1034
AvaII GGWCC 3 cut(s) 43, 440, 940
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 167
BanII GRGCYC 2 cut(s) 35, 855
Bbv12I GWGCWC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 698
BccI CCATC 4 cut(s) 98, 359, 552, 944
BceAI ACGGC 3 cut(s) 124, 205, 540
BciT130I CCWGG 4 cut(s) 47, 512, 555, 870
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 869
BfaI CTAG 2 cut(s) 450, 975
BfmI CTRYAG 1 cut(s) 803
BfrI CTTAAG 1 cut(s) 932
BfuAI ACCTGC 1 cut(s) 457
BisI GCNGC 3 cut(s) 162, 458, 712
BlsI GCNGC 3 cut(s) 163, 459, 713
Bme1390I CCNGG 5 cut(s) 12, 47, 512, 555, 870
Bme18I GGWCC 3 cut(s) 43, 440, 940
BmeT110I CYCGRG 3 cut(s) 28, 62, 1034
BmgT120I GGNCC 5 cut(s) 43, 54, 440, 617, 940
BmiI GGNNCC 6 cut(s) 85, 169, 219, 618, 852, 942
BmrFI CCNGG 5 cut(s) 12, 47, 512, 555, 870
BmrI ACTGGG 1 cut(s) 429
BmsI GCATC 4 cut(s) 419, 559, 748, 805
BmuI ACTGGG 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 12
Bsa29I ATCGAT 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 954
BsaHI GRCGYC 1 cut(s) 1030
BsaJI CCNNGG 6 cut(s) 10, 156, 221, 436, 869, 944
BsaWI WCCGGW 2 cut(s) 80, 214
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 950
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 424
Bse8I GATNNNNATC 1 cut(s) 954
BseAI TCCGGA 2 cut(s) 80, 214
BseBI CCWGG 4 cut(s) 47, 512, 555, 870
BseCI ATCGAT 1 cut(s) 177
BseDI CCNNGG 6 cut(s) 10, 156, 221, 436, 869, 944
BseGI GGATG 5 cut(s) 90, 507, 550, 563, 955
BseJI GATNNNNATC 1 cut(s) 954
BseLI CCNNNNNNNGG 2 cut(s) 157, 950
BseMII CTCAG 2 cut(s) 362, 729
BseNI ACTGG 1 cut(s) 424
BseXI GCAGC 1 cut(s) 698
Bsh1236I CGCG 1 cut(s) 193
BshFI GGCC 5 cut(s) 55, 161, 460, 479, 619
BshNI GGYRCC 1 cut(s) 167
BshVI ATCGAT 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 35
BsiHKCI CYCGRG 3 cut(s) 28, 62, 1034
BsiSI CCGG 5 cut(s) 12, 81, 165, 215, 293
BslFI GGGAC 2 cut(s) 920, 926
BslI CCNNNNNNNGG 2 cut(s) 157, 950
BsmAI GTCTC 1 cut(s) 869
BsmFI GGGAC 2 cut(s) 920, 926
BsmI GAATGC 1 cut(s) 761
BsnI GGCC 5 cut(s) 55, 161, 460, 479, 619
BsoBI CYCGRG 3 cut(s) 28, 62, 1034
Bsp1286I GDGCHC 2 cut(s) 35, 855
Bsp13I TCCGGA 2 cut(s) 80, 214
Bsp143I GATC 3 cut(s) 49, 574, 604
Bsp19I CCATGG 1 cut(s) 436
BspACI CCGC 4 cut(s) 147, 162, 193, 457
BspANI GGCC 5 cut(s) 55, 161, 460, 479, 619
BspCNI CTCAG 2 cut(s) 363, 728
BspDI ATCGAT 1 cut(s) 177
BspEI TCCGGA 2 cut(s) 80, 214
BspFNI CGCG 1 cut(s) 193
BspLI GGNNCC 6 cut(s) 85, 169, 219, 618, 852, 942
BspMI ACCTGC 1 cut(s) 457
BspPI GGATC 3 cut(s) 57, 582, 612
BspT107I GGYRCC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 932
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 6 cut(s) 10, 156, 221, 436, 869, 944
BssMI GATC 3 cut(s) 49, 574, 604
BssNI GRCGYC 1 cut(s) 1030
BssT1I CCWWGG 1 cut(s) 436
Bst2UI CCWGG 4 cut(s) 47, 512, 555, 870
Bst4CI ACNGT 1 cut(s) 679
BstACI GRCGYC 1 cut(s) 1030
BstAFI CTTAAG 1 cut(s) 932
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 371, 715
BstDSI CCRYGG 3 cut(s) 221, 436, 944
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 5 cut(s) 90, 507, 550, 563, 955
BstFNI CGCG 1 cut(s) 193
BstKTI GATC 3 cut(s) 52, 577, 607
BstMAI GTCTC 1 cut(s) 869
BstMBI GATC 3 cut(s) 49, 574, 604
BstMWI GCNNNNNNNGC 7 cut(s) 117, 130, 161, 167, 454, 463, 720
BstNI CCWGG 4 cut(s) 47, 512, 555, 870
BstSCI CCNGG 5 cut(s) 10, 45, 510, 553, 868
BstSFI CTRYAG 1 cut(s) 803
BstUI CGCG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 698
Bsu15I ATCGAT 1 cut(s) 177
BsuRI GGCC 5 cut(s) 55, 161, 460, 479, 619
BsuTUI ATCGAT 1 cut(s) 177
BtgI CCRYGG 3 cut(s) 221, 436, 944
BtsCI GGATG 5 cut(s) 90, 507, 550, 563, 955
BtsIMutI CAGTG 1 cut(s) 675
BveI ACCTGC 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 5 cut(s) 43, 54, 440, 617, 940
ClaI ATCGAT 1 cut(s) 177
CseI GACGC 1 cut(s) 1038
Csp6I GTAC 2 cut(s) 433, 739
CviAII CATG 4 cut(s) 339, 437, 608, 819
CviQI GTAC 2 cut(s) 433, 739
DdeI CTNAG 2 cut(s) 371, 715
DpnI GATC 3 cut(s) 51, 576, 606
DpnII GATC 3 cut(s) 49, 574, 604
DraIII CACNNNGTG 1 cut(s) 195
EaeI YGGCCR 2 cut(s) 458, 477
Ecl136II GAGCTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 436
Eco24I GRGCYC 2 cut(s) 35, 855
Eco32I GATATC 1 cut(s) 139
Eco47I GGWCC 3 cut(s) 43, 440, 940
Eco53kI GAGCTC 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 669
Eco88I CYCGRG 3 cut(s) 28, 62, 1034
EcoICRI GAGCTC 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoO109I RGGNCCY 2 cut(s) 617, 940
EcoRII CCWGG 4 cut(s) 45, 510, 553, 868
EcoRV GATATC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 436
EcoT22I ATGCAT 3 cut(s) 344, 763, 798
EcoT38I GRGCYC 2 cut(s) 35, 855
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 4 cut(s) 342, 440, 611, 822
FalI AAGNNNNNCTT 2 cut(s) 770, 802
FaqI GGGAC 2 cut(s) 920, 926
FatI CATG 4 cut(s) 338, 436, 607, 818
FauI CCCGC 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 162, 458, 712
FokI GGATG 5 cut(s) 77, 494, 537, 570, 962
FriOI GRGCYC 2 cut(s) 35, 855
Fsp4HI GCNGC 3 cut(s) 162, 458, 712
FspBI CTAG 2 cut(s) 450, 975
GluI GCNGC 3 cut(s) 162, 458, 712
HaeIII GGCC 5 cut(s) 55, 161, 460, 479, 619
HapII CCGG 5 cut(s) 12, 81, 165, 215, 293
HgaI GACGC 1 cut(s) 1038
Hin1I GRCGYC 1 cut(s) 1030
Hin1II CATG 4 cut(s) 342, 440, 611, 822
HinfI GANTC 5 cut(s) 182, 208, 271, 566, 1016
HpaII CCGG 5 cut(s) 12, 81, 165, 215, 293
HphI GGTGA 1 cut(s) 280
Hpy166II GTNNAC 1 cut(s) 664
Hpy188I TCNGA 4 cut(s) 37, 263, 960, 1028
Hpy188III TCNNGA 5 cut(s) 81, 215, 578, 647, 766
Hpy8I GTNNAC 1 cut(s) 664
Hpy99I CGWCG 2 cut(s) 110, 1032
HpyAV CCTTC 7 cut(s) 87, 125, 565, 644, 685, 796, 931
HpyCH4III ACNGT 1 cut(s) 679
HpyCH4V TGCA 7 cut(s) 342, 410, 544, 698, 761, 796, 893
HpyF10VI GCNNNNNNNGC 7 cut(s) 117, 130, 161, 167, 454, 463, 720
HpyF3I CTNAG 2 cut(s) 371, 715
Hsp92I GRCGYC 1 cut(s) 1030
Hsp92II CATG 4 cut(s) 342, 440, 611, 822
Kpn2I TCCGGA 2 cut(s) 80, 214
Kzo9I GATC 3 cut(s) 49, 574, 604
LmnI GCTCC 5 cut(s) 38, 83, 217, 850, 1029
Lsp1109I GCAGC 1 cut(s) 698
LweI GCATC 4 cut(s) 419, 559, 748, 805
MaeI CTAG 2 cut(s) 450, 975
MalI GATC 3 cut(s) 51, 576, 606
MboI GATC 3 cut(s) 49, 574, 604
MboII GAAGA 2 cut(s) 306, 604
MhlI GDGCHC 2 cut(s) 35, 855
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 9 cut(s) 38, 226, 332, 537, 582, 596, 747, 887, 912
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 2 cut(s) 176, 1025
MmeI TCCRAC 1 cut(s) 118
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 3 cut(s) 344, 763, 798
MroI TCCGGA 2 cut(s) 80, 214
MscI TGGCCA 1 cut(s) 479
MseI TTAA 5 cut(s) 201, 389, 599, 687, 933
MslI CAYNNNNRTG 1 cut(s) 680
Msp20I TGGCCA 1 cut(s) 479
MspCI CTTAAG 1 cut(s) 932
MspI CCGG 5 cut(s) 12, 81, 165, 215, 293
MspR9I CCNGG 5 cut(s) 12, 47, 512, 555, 870
Mva1269I GAATGC 1 cut(s) 761
MvaI CCWGG 4 cut(s) 47, 512, 555, 870
MvnI CGCG 1 cut(s) 193
MwoI GCNNNNNNNGC 7 cut(s) 117, 130, 161, 167, 454, 463, 720
NciI CCSGG 1 cut(s) 12
NcoI CCATGG 1 cut(s) 436
NdeII GATC 3 cut(s) 49, 574, 604
NlaIII CATG 4 cut(s) 342, 440, 611, 822
NlaIV GGNNCC 6 cut(s) 85, 169, 219, 618, 852, 942
NmeAIII GCCGAG 2 cut(s) 181, 1039
NsiI ATGCAT 3 cut(s) 344, 763, 798
PaeR7I CTCGAG 3 cut(s) 28, 62, 1034
PctI GAATGC 1 cut(s) 761
PfeI GAWTC 3 cut(s) 208, 271, 566
PfoI TCCNGGA 2 cut(s) 510, 553
PkrI GCNGC 3 cut(s) 163, 459, 713
PleI GAGTC 2 cut(s) 176, 1024
PpsI GAGTC 2 cut(s) 176, 1024
PpuMI RGGWCCY 1 cut(s) 940
Psp124BI GAGCTC 1 cut(s) 35
Psp5II RGGWCCY 1 cut(s) 940
Psp6I CCWGG 4 cut(s) 45, 510, 553, 868
PspGI CCWGG 4 cut(s) 45, 510, 553, 868
PspN4I GGNNCC 6 cut(s) 85, 169, 219, 618, 852, 942
PspPI GGNCC 5 cut(s) 43, 54, 440, 617, 940
PspPPI RGGWCCY 1 cut(s) 940
PspXI VCTCGAGB 3 cut(s) 28, 62, 1034
RsaI GTAC 2 cut(s) 434, 740
RsaNI GTAC 2 cut(s) 433, 739
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 1 cut(s) 35
SaqAI TTAA 5 cut(s) 201, 389, 599, 687, 933
SatI GCNGC 3 cut(s) 162, 458, 712
Sau3AI GATC 3 cut(s) 49, 574, 604
Sau96I GGNCC 5 cut(s) 43, 54, 440, 617, 940
SchI GAGTC 2 cut(s) 176, 1025
ScrFI CCNGG 5 cut(s) 12, 47, 512, 555, 870
SduI GDGCHC 2 cut(s) 35, 855
SfaNI GCATC 4 cut(s) 419, 559, 748, 805
SfcI CTRYAG 1 cut(s) 803
Sfr274I CTCGAG 3 cut(s) 28, 62, 1034
SgrAI CRCCGGYG 1 cut(s) 164
SinI GGWCC 3 cut(s) 43, 440, 940
SlaI CTCGAG 3 cut(s) 28, 62, 1034
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 4 cut(s) 28, 62, 932, 1034
SmoI CTYRAG 4 cut(s) 28, 62, 932, 1034
Sse9I AATT 9 cut(s) 38, 226, 332, 537, 582, 596, 747, 887, 912
SsiI CCGC 4 cut(s) 147, 162, 193, 457
SspI AATATT 1 cut(s) 235
SspMI CTAG 2 cut(s) 450, 975
SstI GAGCTC 1 cut(s) 35
StyD4I CCNGG 5 cut(s) 10, 45, 510, 553, 868
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 1 cut(s) 679
TaqI TCGA 8 cut(s) 29, 63, 177, 206, 274, 569, 922, 1035
TasI AATT 9 cut(s) 38, 226, 332, 537, 582, 596, 747, 887, 912
TatI WGTACW 1 cut(s) 738
TauI GCSGC 2 cut(s) 164, 460
TfiI GAWTC 3 cut(s) 208, 271, 566
Tru1I TTAA 5 cut(s) 201, 389, 599, 687, 933
Tru9I TTAA 5 cut(s) 201, 389, 599, 687, 933
TscAI CASTG 1 cut(s) 682
TseI GCWGC 1 cut(s) 711
TspDTI ATGAA 2 cut(s) 493, 878
TspRI CASTG 1 cut(s) 682
Vha464I CTTAAG 1 cut(s) 932
VpaK11BI GGWCC 3 cut(s) 43, 440, 940
XagI CCTNNNNNAGG 1 cut(s) 155
XapI RAATTY 3 cut(s) 332, 747, 887
XhoI CTCGAG 3 cut(s) 28, 62, 1034
XspI CTAG 2 cut(s) 450, 975
Zsp2I ATGCAT 3 cut(s) 344, 763, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.