Rmu_co8435311.1_g000001

lysM domain-containing GPI-anchored protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8435311.1
Physical Location & Seq
Reverse (-)
2 .. 1013
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8435311.1_g000001.1.cds

Sequence Viewer

Length: 370 bp
atgactgatgtttcaaatgtggatttggcagcttgtgcatcgtcagtacgaaatgactcgatagattccccgttacttgttcctaataacacctatgtcttcactgcttacagttgtgtgaagtgccaatgtagttctgcgaacaactggacattacaatgcgagccatcaaatcttaattcaactctctggtcgaaatgcccttcgatgcaatgccaagatccaaatcaattatacattggcaacaccacatcttcctccggctgcaatcaaacaacttgtgcctatagggggtacgataagcaaaccatttttacagatctggtagctcagtccacctgttcaactcctagcatcgcttcaaagatgg

Protein Analysis

123

Amino Acids

13.31

Weight (kDa)

4.61

Isoelectric Point (pI)

40.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012394)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 215
AfaI GTAC 2 cut(s) 48, 296
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 4 cut(s) 15, 183, 345, 363
AluBI AGCT 2 cut(s) 32, 329
AluI AGCT 2 cut(s) 32, 329
AlwI GGATC 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 29, 264
BbsI GAAGAC 1 cut(s) 91
BbvI GCAGC 2 cut(s) 41, 251
BccI CCATC 2 cut(s) 175, 361
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 286
BglII AGATCT 1 cut(s) 319
BisI GCNGC 2 cut(s) 30, 265
BlsI GCNGC 2 cut(s) 31, 266
BmsI GCATC 3 cut(s) 47, 198, 363
BpiI GAAGAC 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 225
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse1I ACTGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 225
BseJI GATNNNNATC 1 cut(s) 225
BseLI CCNNNNNNNGG 1 cut(s) 291
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 152
BseXI GCAGC 2 cut(s) 41, 251
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 1 cut(s) 291
Bsp143I GATC 2 cut(s) 220, 319
BspCNI CTCAG 1 cut(s) 343
BspPI GGATC 1 cut(s) 215
BsrDI GCAATG 1 cut(s) 218
BsrI ACTGG 1 cut(s) 152
BssMI GATC 2 cut(s) 220, 319
Bst4CI ACNGT 1 cut(s) 113
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 164
BstDEI CTNAG 1 cut(s) 330
BstKTI GATC 2 cut(s) 223, 322
BstMBI GATC 2 cut(s) 220, 319
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 41, 251
BstV2I GAAGAC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 220, 319
BstYI RGATCY 2 cut(s) 220, 319
BtgZI GCGATG 1 cut(s) 340
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 164
Csp6I GTAC 2 cut(s) 47, 295
CviJI RGCY 4 cut(s) 32, 166, 264, 329
CviKI_1 RGCY 4 cut(s) 32, 166, 264, 329
CviQI GTAC 2 cut(s) 47, 295
DdeI CTNAG 1 cut(s) 330
DpnI GATC 2 cut(s) 222, 321
DpnII GATC 2 cut(s) 220, 319
FaiI YATR 3 cut(s) 96, 235, 288
Fnu4HI GCNGC 2 cut(s) 30, 265
Fsp4HI GCNGC 2 cut(s) 30, 265
FspBI CTAG 1 cut(s) 351
GluI GCNGC 2 cut(s) 30, 265
HapII CCGG 1 cut(s) 261
HinfI GANTC 2 cut(s) 56, 65
HpaII CCGG 1 cut(s) 261
Hpy166II GTNNAC 1 cut(s) 336
Hpy8I GTNNAC 1 cut(s) 336
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 38, 211, 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 330
Kzo9I GATC 2 cut(s) 220, 319
LpnPI CCDG 5 cut(s) 133, 175, 274, 308, 352
Lsp1109I GCAGC 2 cut(s) 41, 251
LweI GCATC 3 cut(s) 47, 198, 363
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 72
MalI GATC 2 cut(s) 222, 321
MboI GATC 2 cut(s) 220, 319
MboII GAAGA 2 cut(s) 91, 246
MflI RGATCY 2 cut(s) 220, 319
MluCI AATT 2 cut(s) 178, 230
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 1 cut(s) 268
MseI TTAA 1 cut(s) 177
MslI CAYNNNNRTG 1 cut(s) 157
MspI CCGG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 2 cut(s) 220, 319
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 2 cut(s) 31, 266
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PsuI RGATCY 2 cut(s) 220, 319
RsaI GTAC 2 cut(s) 48, 296
RsaNI GTAC 2 cut(s) 47, 295
RseI CAYNNNNRTG 1 cut(s) 157
SaqAI TTAA 1 cut(s) 177
SatI GCNGC 2 cut(s) 30, 265
Sau3AI GATC 2 cut(s) 220, 319
SchI GAGTC 1 cut(s) 50
SetI ASST 4 cut(s) 34, 95, 331, 341
SfaNI GCATC 3 cut(s) 47, 198, 363
SfcI CTRYAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 157
Sse9I AATT 2 cut(s) 178, 230
SspMI CTAG 1 cut(s) 351
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 3 cut(s) 59, 194, 206
TasI AATT 2 cut(s) 178, 230
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 1 cut(s) 177
Tru9I TTAA 1 cut(s) 177
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 29, 264
TspRI CASTG 1 cut(s) 109
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.