Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012394

Physical Location & Seq

Genomic Coordinates Forward (+)

14321167 .. 14325074

Gene Structure 3908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g16381.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGGTTTCTCTAAGCTCACCCTGCTCCTCCTCCTCACCCTCATCTCCATTCTCACCGCCCCTTCCTCCACCGCCTTCAACTGCACCACCCCCACCAACGCCACTTCCAACTGCCACGCGCTCATCGACTTCGTCCCCACAAACGCCACCACTCTCAACGCCGTCAAGACCCTCTTCAACATGACCCACCTCCGCACCCTCCTCGGAGCCAACAACCTCCCCCTCTCGACCCCAGCCGACTCACCCGTCCCCGCCGCCAGCAAGCTCCTCGTCCCCTTCTCCTGCACCTGCCTCAACGGCTCCGGCATCTCCAAACGCCGCCCCATCTACACCGTCAAGGCCGGCGACGGCCTCGACTACATAGCCAGCCTCTTCTCCCGCCTCGTCACCTACCAGGAGATCGCGCAGGTCAACGGCATACCCGACCCGAATCAGATCGAGGTCGGGCAGCAGCTGTGGATCCCACTGCCGTGTAGCTGCGACCACGTGGACGGCCTGGAGGTCGTGCATTACGGACATGTGGTGGAGGCTGGGAGCTCGGTGCAGAAGATCGCCGAAGAGTACGGGACCACCGAAGAGACGCTCCTCAGGATTAATGGGATGCCCGACCCGAATAAACTTCTGGCTGGGCAGGTCCTTGATGTTCCTCTCAAAGCTTGTGCATCGTCAGTATCAAATGACTCGTTTGATTCCCCGCTACTTGTTTCTAATAACACATACGTCTTCACTGCTAACAATTGCGTGAAGTGTCAATGTAGTTCTGCGAACAACTGGACATTACAATGCGAGCCATCATATCTTAATTCAACTCTCTGGGAAACATGCCCTTCGATGCAATGCCAAGATTCAAATCAGTTATACATAGGCAACACTACCTCCTCCACCTGCAATCAAACAACTTGTGCCTATACGGGTTACAATACCAACACCATTCTTACTAAGCTGGTAGCTCAGTCCACCTGTTCAACTCCCAACACCGCTTCAAAGATGGGATTACACGGCTCCAGCTGGAACTTCTTTTTCGTAGCAGTTCACTTGGCGCTTCTTTGTCTCCATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008061 GO:0008144 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

354

Amino Acids

37.96

Weight (kDa)

5.7

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM	PF01476	110 - 155	1.3e-11	LysM domain
LysM	PF01476	173 - 216	4e-10	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17120
fragaria_vesca	FvH4_2g16381
malus_domestica	MD00G1083800.v1.1
prunus_persica	Prupe.8G176700_v2.0.a1 Prupe.8G176700_v2.0.a1
pyrus_communis	pycom05g12980
rosa_chinensis	RchiOBHm_Chr6g0280171
rosa_laevigata	RLG00000013080
rosa_multiflora	Rmu_co8435311.1_g000001 Rmu_sc0007137.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188340
rosa_rugosa	Rorug06G0130300 Rorug06G0130400
rosa_samantha	Rh6AG240700 Rh6AG241500 Rh6BG244400 Rh6CG246000 Rh6DG237100
rosa_wichuraiana	Rw6G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	296, 893
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	4 cut(s)	296, 397, 622, 893
AccII	CGCG	2 cut(s)	119, 404
AciI	CCGC	9 cut(s)	57, 72, 193, 252, 255, 319, 379, 695, 978
AclWI	GGATC	2 cut(s)	454, 467
AcvI	CACGTG	1 cut(s)	487
AfaI	GTAC	1 cut(s)	563
AflIII	ACRYGT	1 cut(s)	517
AgsI	TTSAA	6 cut(s)	79, 178, 807, 849, 966, 984
AjnI	CCWGG	2 cut(s)	393, 495
AleI	CACNNNNGTG	1 cut(s)	469
AluBI	AGCT	9 cut(s)	16, 265, 454, 477, 537, 656, 943, 950, 1008
AluI	AGCT	9 cut(s)	16, 265, 454, 477, 537, 656, 943, 950, 1008
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	2 cut(s)	572, 1055
AlwI	GGATC	2 cut(s)	454, 467
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	3 cut(s)	339, 349, 493
ApeKI	GCWGC	3 cut(s)	448, 451, 477
AseI	ATTAAT	1 cut(s)	594
AspLEI	GCGC	3 cut(s)	121, 406, 1042
AspS9I	GGNCC	2 cut(s)	567, 634
AsuHPI	GGTGA	5 cut(s)	10, 28, 46, 234, 379
AvaII	GGWCC	2 cut(s)	567, 634
AxyI	CCTNAGG	1 cut(s)	587
BamHI	GGATCC	1 cut(s)	459
BanII	GRGCYC	1 cut(s)	539
BbrPI	CACGTG	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	715
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	3 cut(s)	460, 463, 464
BccI	CCATC	3 cut(s)	332, 799, 982
BceAI	ACGGC	7 cut(s)	146, 313, 364, 430, 454, 508, 1015
BcgI	CGANNNNNNTGC	4 cut(s)	184, 218, 250, 284
BciT130I	CCWGG	2 cut(s)	395, 497
BcoDI	GTCTC	2 cut(s)	572, 1055
BfoI	RGCGCY	1 cut(s)	1043
BfuAI	ACCTGC	4 cut(s)	296, 397, 622, 893
BglI	GCCNNNNNGGC	1 cut(s)	297
BisI	GCNGC	5 cut(s)	255, 319, 449, 452, 478
BlsI	GCNGC	5 cut(s)	256, 320, 450, 453, 479
Bme1390I	CCNGG	2 cut(s)	395, 497
Bme18I	GGWCC	2 cut(s)	567, 634
BmgT120I	GGNCC	2 cut(s)	567, 634
BmiI	GGNNCC	5 cut(s)	208, 301, 461, 568, 1003
BmrFI	CCNGG	2 cut(s)	395, 497
BmsI	GCATC	4 cut(s)	315, 591, 671, 822
BpiI	GAAGAC	1 cut(s)	715
BpmI	CTGGAG	2 cut(s)	518, 988
BsaAI	YACGTR	1 cut(s)	487
BsaBI	GATNNNNATC	1 cut(s)	849
BsaJI	CCNNGG	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	860, 890
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	776
Bse21I	CCTNAGG	1 cut(s)	587
Bse3DI	GCAATG	1 cut(s)	842
Bse8I	GATNNNNATC	1 cut(s)	849
BseBI	CCWGG	2 cut(s)	395, 497
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	606
BseJI	GATNNNNATC	1 cut(s)	849
BseMI	GCAATG	1 cut(s)	842
BseMII	CTCAG	2 cut(s)	601, 965
BseNI	ACTGG	1 cut(s)	776
BseRI	GAGGAG	7 cut(s)	17, 20, 23, 191, 257, 575, 868
BseXI	GCAGC	3 cut(s)	460, 463, 464
BseYI	CCCAGC	3 cut(s)	232, 530, 626
BsgI	GTGCAG	3 cut(s)	67, 268, 563
Bsh1236I	CGCG	2 cut(s)	119, 404
BshFI	GGCC	3 cut(s)	341, 351, 495
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	303, 342
BslFI	GGGAC	4 cut(s)	119, 233, 257, 580
BsmAI	GTCTC	2 cut(s)	572, 1055
BsmBI	CGTCTC	1 cut(s)	572
BsmFI	GGGAC	4 cut(s)	119, 233, 257, 580
BsnI	GGCC	3 cut(s)	341, 351, 495
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	4 cut(s)	399, 435, 459, 549
BspACI	CCGC	9 cut(s)	57, 72, 193, 252, 255, 319, 379, 695, 978
BspANI	GGCC	3 cut(s)	341, 351, 495
BspCNI	CTCAG	2 cut(s)	600, 964
BspFNI	CGCG	2 cut(s)	119, 404
BspLI	GGNNCC	5 cut(s)	208, 301, 461, 568, 1003
BspMI	ACCTGC	4 cut(s)	296, 397, 622, 893
BspPI	GGATC	2 cut(s)	454, 467
BsrDI	GCAATG	1 cut(s)	842
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	1 cut(s)	776
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	4 cut(s)	399, 435, 459, 549
Bst2UI	CCWGG	2 cut(s)	395, 497
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	4 cut(s)	179, 377, 552, 570
BstBAI	YACGTR	1 cut(s)	487
BstC8I	GCNNGC	5 cut(s)	259, 263, 343, 367, 788
BstDEI	CTNAG	4 cut(s)	12, 587, 939, 951
BstF5I	GGATG	1 cut(s)	606
BstFNI	CGCG	2 cut(s)	119, 404
BstH2I	RGCGCY	1 cut(s)	1043
BstHHI	GCGC	3 cut(s)	121, 406, 1042
BstKTI	GATC	4 cut(s)	402, 438, 462, 552
BstMAI	GTCTC	2 cut(s)	572, 1055
BstMBI	GATC	4 cut(s)	399, 435, 459, 549
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 297
BstNI	CCWGG	2 cut(s)	395, 497
BstNSI	RCATGY	2 cut(s)	521, 825
BstSCI	CCNGG	2 cut(s)	393, 495
BstUI	CGCG	2 cut(s)	119, 404
BstV1I	GCAGC	3 cut(s)	460, 463, 464
BstV2I	GAAGAC	1 cut(s)	715
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	587
BsuRI	GGCC	3 cut(s)	341, 351, 495
BtsCI	GGATG	1 cut(s)	606
BtsI	GCAGTG	2 cut(s)	464, 726
BtsIMutI	CAGTG	2 cut(s)	464, 726
BveI	ACCTGC	4 cut(s)	296, 397, 622, 893
Cac8I	GCNNGC	5 cut(s)	259, 263, 343, 367, 788
CaiI	CAGNNNCTG	1 cut(s)	454
CfoI	GCGC	3 cut(s)	121, 406, 1042
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	2 cut(s)	567, 634
CseI	GACGC	1 cut(s)	589
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	3 cut(s)	181, 518, 822
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	4 cut(s)	12, 587, 939, 951
DpnI	GATC	4 cut(s)	401, 437, 461, 551
DpnII	GATC	4 cut(s)	399, 435, 459, 549
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	4 cut(s)	179, 377, 552, 570
EarI	CTCTTC	4 cut(s)	179, 377, 552, 570
Ecl136II	GAGCTC	1 cut(s)	537
Eco24I	GRGCYC	1 cut(s)	539
Eco47I	GGWCC	2 cut(s)	567, 634
Eco53kI	GAGCTC	1 cut(s)	537
Eco72I	CACGTG	1 cut(s)	487
Eco81I	CCTNAGG	1 cut(s)	587
EcoICRI	GAGCTC	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRII	CCWGG	2 cut(s)	393, 495
EcoT38I	GRGCYC	1 cut(s)	539
Esp3I	CGTCTC	1 cut(s)	572
FaeI	CATG	3 cut(s)	184, 521, 825
FalI	AAGNNNNNCTT	2 cut(s)	158, 190
FaqI	GGGAC	4 cut(s)	119, 233, 257, 580
FatI	CATG	3 cut(s)	180, 517, 821
FauI	CCCGC	3 cut(s)	259, 386, 702
Fnu4HI	GCNGC	5 cut(s)	255, 319, 449, 452, 478
FokI	GGATG	1 cut(s)	613
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	5 cut(s)	255, 319, 449, 452, 478
GlaI	GCGC	3 cut(s)	120, 405, 1041
GluI	GCNGC	5 cut(s)	255, 319, 449, 452, 478
GsaI	CCCAGC	3 cut(s)	236, 534, 630
GsuI	CTGGAG	2 cut(s)	518, 988
HaeII	RGCGCY	1 cut(s)	1043
HaeIII	GGCC	3 cut(s)	341, 351, 495
HapII	CCGG	2 cut(s)	303, 342
HgaI	GACGC	1 cut(s)	589
HhaI	GCGC	3 cut(s)	121, 406, 1042
Hin1II	CATG	3 cut(s)	184, 521, 825
Hin6I	GCGC	3 cut(s)	119, 404, 1040
HinP1I	GCGC	3 cut(s)	119, 404, 1040
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	654
HinfI	GANTC	5 cut(s)	239, 430, 680, 689, 845
HpaII	CCGG	2 cut(s)	303, 342
HphI	GGTGA	5 cut(s)	10, 28, 46, 234, 379
Hpy166II	GTNNAC	4 cut(s)	412, 490, 957, 1033
Hpy188I	TCNGA	2 cut(s)	206, 435
Hpy188III	TCNNGA	3 cut(s)	166, 226, 589
Hpy8I	GTNNAC	4 cut(s)	412, 490, 957, 1033
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	72, 85, 286, 837
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	2 cut(s)	486, 720
HpyCH4V	TGCA	7 cut(s)	84, 285, 508, 544, 662, 835, 888
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 297
HpyF3I	CTNAG	4 cut(s)	12, 587, 939, 951
HpySE526I	ACGT	2 cut(s)	486, 720
Hsp92II	CATG	3 cut(s)	184, 521, 825
HspAI	GCGC	3 cut(s)	119, 404, 1040
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
Kzo9I	GATC	4 cut(s)	399, 435, 459, 549
LmnI	GCTCC	7 cut(s)	30, 206, 270, 305, 534, 588, 1007
Lsp1109I	GCAGC	3 cut(s)	460, 463, 464
LweI	GCATC	4 cut(s)	315, 591, 671, 822
MaeII	ACGT	2 cut(s)	486, 720
MaeIII	GTNAC	2 cut(s)	385, 914
MalI	GATC	4 cut(s)	401, 437, 461, 551
MboI	GATC	4 cut(s)	399, 435, 459, 549
MboII	GAAGA	6 cut(s)	166, 364, 559, 569, 587, 715
MfeI	CAATTG	1 cut(s)	736
MflI	RGATCY	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	2 cut(s)	736, 802
MlyI	GAGTC	2 cut(s)	233, 674
MmeI	TCCRAC	1 cut(s)	132
MroNI	GCCGGC	1 cut(s)	341
MseI	TTAA	2 cut(s)	594, 801
MslI	CAYNNNNRTG	2 cut(s)	469, 781
MspA1I	CMGCKG	2 cut(s)	454, 1008
MspI	CCGG	2 cut(s)	303, 342
MspR9I	CCNGG	2 cut(s)	395, 497
MunI	CAATTG	1 cut(s)	736
MvaI	CCWGG	2 cut(s)	395, 497
MvnI	CGCG	2 cut(s)	119, 404
MwoI	GCNNNNNNNGC	2 cut(s)	22, 297
NaeI	GCCGGC	1 cut(s)	343
NdeII	GATC	4 cut(s)	399, 435, 459, 549
NgoMIV	GCCGGC	1 cut(s)	341
NlaIII	CATG	3 cut(s)	184, 521, 825
NlaIV	GGNNCC	5 cut(s)	208, 301, 461, 568, 1003
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	2 cut(s)	521, 825
OliI	CACNNNNGTG	1 cut(s)	469
PaqCI	CACCTGC	2 cut(s)	296, 893
PciI	ACATGT	1 cut(s)	517
PcsI	WCGNNNNNNNCGW	3 cut(s)	123, 420, 570
PdiI	GCCGGC	1 cut(s)	343
PfeI	GAWTC	3 cut(s)	430, 689, 845
PflFI	GACNNNGTC	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	256, 320, 450, 453, 479
PleI	GAGTC	2 cut(s)	233, 674
PmaCI	CACGTG	1 cut(s)	487
PmlI	CACGTG	1 cut(s)	487
PpsI	GAGTC	2 cut(s)	233, 674
Ppu21I	YACGTR	1 cut(s)	487
PpuMI	RGGWCCY	1 cut(s)	634
PscI	ACATGT	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	594
Psp124BI	GAGCTC	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	393, 495
PspCI	CACGTG	1 cut(s)	487
PspFI	CCCAGC	3 cut(s)	232, 530, 626
PspGI	CCWGG	2 cut(s)	393, 495
PspN4I	GGNNCC	5 cut(s)	208, 301, 461, 568, 1003
PspPI	GGNCC	2 cut(s)	567, 634
PspPPI	RGGWCCY	1 cut(s)	634
PstNI	CAGNNNCTG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	459
PsyI	GACNNNGTC	1 cut(s)	131
PvuII	CAGCTG	2 cut(s)	454, 1008
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
RseI	CAYNNNNRTG	2 cut(s)	469, 781
SacI	GAGCTC	1 cut(s)	539
SaqAI	TTAA	2 cut(s)	594, 801
SatI	GCNGC	5 cut(s)	255, 319, 449, 452, 478
Sau3AI	GATC	4 cut(s)	399, 435, 459, 549
Sau96I	GGNCC	2 cut(s)	567, 634
SchI	GAGTC	2 cut(s)	233, 674
ScrFI	CCNGG	2 cut(s)	395, 497
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	4 cut(s)	315, 591, 671, 822
SinI	GGWCC	2 cut(s)	567, 634
SmiMI	CAYNNNNRTG	2 cut(s)	469, 781
Sse9I	AATT	2 cut(s)	736, 802
SsiI	CCGC	9 cut(s)	57, 72, 193, 252, 255, 319, 379, 695, 978
SstI	GAGCTC	1 cut(s)	539
StyD4I	CCNGG	2 cut(s)	393, 495
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	2 cut(s)	489, 723
TaqI	TCGA	5 cut(s)	126, 227, 354, 438, 830
TasI	AATT	2 cut(s)	736, 802
TauI	GCSGC	2 cut(s)	257, 321
TfiI	GAWTC	3 cut(s)	430, 689, 845
Tru1I	TTAA	2 cut(s)	594, 801
Tru9I	TTAA	2 cut(s)	594, 801
TscAI	CASTG	2 cut(s)	471, 733
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	3 cut(s)	448, 451, 477
Tsp45I	GTSAC	1 cut(s)	385
TspGWI	ACGGA	1 cut(s)	528
TspRI	CASTG	2 cut(s)	471, 733
Tth111I	GACNNNGTC	1 cut(s)	131
VpaK11BI	GGWCC	2 cut(s)	567, 634
VspI	ATTAAT	1 cut(s)	594
XceI	RCATGY	2 cut(s)	521, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.