Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012394

Physical Location & Seq

Genomic Coordinates Reverse (-)

25973699 .. 25975815

Gene Structure 2117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013080

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGAGTTTCTCTAACCTCACCCTGCTCCTCACCCTCACCCTCCTTATCTCAACCCTCACCGCCCCCTCCTCCGCCGCCACCTTCAACTGCACTACCCCCACCAATTCCACCTGCCAATCCCTCATCGACTTCACCCCCACAAACGCCACCACTCTCAACGCCGTCAAGACCCTCTTCAACATCACCCACCTCCGCACCTTACTTGGAGCCAACAACTTCCCCCTCTCGACCCGACCCGACCAAACTGTCACCGCCAACCAGACGCTCCGAATCCCCTTCTCCTGCCGCTGCTTCAACGGCTCCGGCGTCTCCGACCGCCGCCCCCAGTACATCGTCAAGGCCGGCGACGGCCTCGACTACATAGCCACCAGCTTGTTCTCGCGCGTGGTCACGTACCAGGAGATCGCCCAGGTTAATGGCATACCCGACCCGAATAAGATCGATGTCGGGCAGAAGCTGTGGATCCCACTGCCGTGTAGCTGCGACAAAGTGGACGGCGAGGATGTAGTGCATTACGGACACGTGGTGGACCCTGGGAGCACGGTGCAGGGGATCGCCGAGGAGTATGGGACCACCCAAGAGACGCTCCTTCGGATCAATGGGATGCCCGACCCCAATGAACTCAAGGCTGGTCAGGTCCTTGATGTTCCTCTCAAAGCTTGTGCATCGTCAGTAGGAAATGACTCGTTCGATTCCCCGTTACTTGTTCCTAATAACACCTATGTCTTCACTGCTTTCAATTGTGTGAAGTGCCAATGTAGTTCTGCGAACAACTGGACATTACAATGCGAGCCATCAAATCTTAATTCAACTCTCTGGAGGCCGTGCCCTTCGATGCAATGCCAAGGTTCAAATCAATTATACATTGGCAACACCACATCTTCCTCCTCCTGCAATCAAACAACTTGTGCCTATAGGGGGTACAATAACCAAACCATTCTTACAGATCTGGTAGCTCAGTCCACCTGTTCAAGTAAGTGCACCTTAACCAGTTTCTTTATAACGAGAATTGCCATTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008061 GO:0008144 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

341

Amino Acids

36.78

Weight (kDa)

5.59

Isoelectric Point (pI)

34.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM	PF01476	110 - 156	1.6e-09	LysM domain
LysM	PF01476	174 - 217	4.2e-11	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17120
fragaria_vesca	FvH4_2g16381
malus_domestica	MD00G1083800.v1.1
prunus_persica	Prupe.8G176700_v2.0.a1 Prupe.8G176700_v2.0.a1
pyrus_communis	pycom05g12980
rosa_chinensis	RchiOBHm_Chr6g0280171
rosa_laevigata	RLG00000013080
rosa_multiflora	Rmu_co8435311.1_g000001 Rmu_sc0007137.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188340
rosa_rugosa	Rorug06G0130300 Rorug06G0130400
rosa_samantha	Rh6AG240700 Rh6AG241500 Rh6BG244400 Rh6CG246000 Rh6DG237100
rosa_wichuraiana	Rw6G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1001
AarI	CACCTGC	1 cut(s)	119
AasI	GACNNNNNNGTC	1 cut(s)	245
Acc36I	ACCTGC	1 cut(s)	119
AccII	CGCG	2 cut(s)	382, 384
AciI	CCGC	8 cut(s)	60, 72, 75, 193, 252, 286, 316, 319
AclWI	GGATC	4 cut(s)	457, 470, 560, 602
AcvI	CACGTG	1 cut(s)	523
AcyI	GRCGYC	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	526
AfaI	GTAC	3 cut(s)	329, 395, 923
AfiI	CCNNNNNNNGG	1 cut(s)	918
AflIII	ACRYGT	1 cut(s)	520
AgsI	TTSAA	7 cut(s)	85, 178, 295, 739, 810, 852, 972
AjnI	CCWGG	3 cut(s)	396, 408, 532
AleI	CACNNNNGTG	1 cut(s)	472
AluBI	AGCT	5 cut(s)	372, 457, 480, 659, 956
AluI	AGCT	5 cut(s)	372, 457, 480, 659, 956
Alw21I	GWGCWC	2 cut(s)	542, 983
Alw26I	GTCTC	2 cut(s)	313, 575
Alw44I	GTGCAC	1 cut(s)	979
AlwI	GGATC	4 cut(s)	457, 470, 560, 602
AlwNI	CAGNNNCTG	1 cut(s)	457
AoxI	GGCC	3 cut(s)	339, 349, 821
ApaLI	GTGCAC	1 cut(s)	979
ApeKI	GCWGC	2 cut(s)	288, 480
AspLEI	GCGC	1 cut(s)	384
AspS9I	GGNCC	3 cut(s)	529, 570, 637
AsuHPI	GGTGA	7 cut(s)	10, 22, 28, 49, 124, 175, 241
AvaII	GGWCC	3 cut(s)	529, 570, 637
BaeGI	GKGCMC	2 cut(s)	830, 983
BamHI	GGATCC	1 cut(s)	462
BbrPI	CACGTG	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	718
Bbv12I	GWGCWC	2 cut(s)	542, 983
BbvI	GCAGC	2 cut(s)	275, 467
BccI	CCATC	1 cut(s)	802
BceAI	ACGGC	6 cut(s)	146, 313, 364, 457, 511, 808
BciT130I	CCWGG	3 cut(s)	398, 410, 534
BcoDI	GTCTC	2 cut(s)	313, 575
BfmI	CTRYAG	1 cut(s)	913
BfuAI	ACCTGC	1 cut(s)	119
BglII	AGATCT	1 cut(s)	946
BisI	GCNGC	5 cut(s)	75, 286, 289, 319, 481
BlsI	GCNGC	5 cut(s)	76, 287, 290, 320, 482
Bme1390I	CCNGG	3 cut(s)	398, 410, 534
Bme18I	GGWCC	3 cut(s)	529, 570, 637
BmgT120I	GGNCC	3 cut(s)	529, 570, 637
BmiI	GGNNCC	5 cut(s)	208, 301, 464, 531, 571
BmrFI	CCNGG	3 cut(s)	398, 410, 534
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	3 cut(s)	594, 674, 825
BmuI	ACTGGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	718
BpmI	CTGGAG	1 cut(s)	838
BpuEI	CTTGAG	1 cut(s)	608
Bsa29I	ATCGAT	1 cut(s)	441
BsaAI	YACGTR	2 cut(s)	393, 523
BsaHI	GRCGYC	1 cut(s)	306
BsaJI	CCNNGG	5 cut(s)	408, 532, 533, 558, 844
Bsc4I	CCNNNNNNNGG	1 cut(s)	918
Bse118I	RCCGGY	1 cut(s)	341
Bse1I	ACTGG	3 cut(s)	325, 779, 990
Bse3DI	GCAATG	2 cut(s)	845, 1014
BseBI	CCWGG	3 cut(s)	398, 410, 534
BseCI	ATCGAT	1 cut(s)	441
BseDI	CCNNGG	5 cut(s)	408, 532, 533, 558, 844
BseGI	GGATG	2 cut(s)	508, 609
BseLI	CCNNNNNNNGG	1 cut(s)	918
BseMI	GCAATG	2 cut(s)	845, 1014
BseMII	CTCAG	1 cut(s)	971
BseNI	ACTGG	3 cut(s)	325, 779, 990
BseRI	GAGGAG	4 cut(s)	17, 58, 575, 877
BseSI	GKGCMC	2 cut(s)	830, 983
BseXI	GCAGC	2 cut(s)	275, 467
BsgI	GTGCAG	2 cut(s)	73, 566
Bsh1236I	CGCG	2 cut(s)	382, 384
Bsh1285I	CGRYCG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	341, 351, 823
BshVI	ATCGAT	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	316
BsiHKAI	GWGCWC	2 cut(s)	542, 983
BsiSI	CCGG	2 cut(s)	303, 342
BslFI	GGGAC	1 cut(s)	583
BslI	CCNNNNNNNGG	1 cut(s)	918
BsmAI	GTCTC	2 cut(s)	313, 575
BsmBI	CGTCTC	2 cut(s)	313, 575
BsmFI	GGGAC	1 cut(s)	583
BsnI	GGCC	3 cut(s)	341, 351, 823
Bsp1286I	GDGCHC	3 cut(s)	542, 830, 983
Bsp143I	GATC	6 cut(s)	402, 438, 462, 552, 594, 946
BspACI	CCGC	8 cut(s)	60, 72, 75, 193, 252, 286, 316, 319
BspANI	GGCC	3 cut(s)	341, 351, 823
BspCNI	CTCAG	1 cut(s)	970
BspDI	ATCGAT	1 cut(s)	441
BspFNI	CGCG	2 cut(s)	382, 384
BspLI	GGNNCC	5 cut(s)	208, 301, 464, 531, 571
BspMI	ACCTGC	1 cut(s)	119
BspPI	GGATC	4 cut(s)	457, 470, 560, 602
BsrDI	GCAATG	2 cut(s)	845, 1014
BsrFI	RCCGGY	1 cut(s)	341
BsrI	ACTGG	3 cut(s)	325, 779, 990
BssAI	RCCGGY	1 cut(s)	341
BssECI	CCNNGG	5 cut(s)	408, 532, 533, 558, 844
BssMI	GATC	6 cut(s)	402, 438, 462, 552, 594, 946
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	1 cut(s)	844
Bst2UI	CCWGG	3 cut(s)	398, 410, 534
Bst4CI	ACNGT	2 cut(s)	247, 544
Bst6I	CTCTTC	1 cut(s)	179
BstACI	GRCGYC	1 cut(s)	306
BstBAI	YACGTR	2 cut(s)	393, 523
BstC8I	GCNNGC	2 cut(s)	343, 791
BstDEI	CTNAG	1 cut(s)	957
BstF5I	GGATG	2 cut(s)	508, 609
BstFNI	CGCG	2 cut(s)	382, 384
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	6 cut(s)	405, 441, 465, 555, 597, 949
BstMAI	GTCTC	2 cut(s)	313, 575
BstMBI	GATC	6 cut(s)	402, 438, 462, 552, 594, 946
BstMCI	CGRYCG	1 cut(s)	316
BstMWI	GCNNNNNNNGC	1 cut(s)	297
BstNI	CCWGG	3 cut(s)	398, 410, 534
BstSCI	CCNGG	3 cut(s)	396, 408, 532
BstSFI	CTRYAG	1 cut(s)	913
BstSLI	GKGCMC	2 cut(s)	830, 983
BstUI	CGCG	2 cut(s)	382, 384
BstV1I	GCAGC	2 cut(s)	275, 467
BstV2I	GAAGAC	1 cut(s)	718
BstX2I	RGATCY	2 cut(s)	462, 946
BstXI	CCANNNNNNTGG	1 cut(s)	416
BstYI	RGATCY	2 cut(s)	462, 946
Bsu15I	ATCGAT	1 cut(s)	441
BsuRI	GGCC	3 cut(s)	341, 351, 823
BsuTUI	ATCGAT	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	508, 609
BtsI	GCAGTG	2 cut(s)	467, 729
BtsIMutI	CAGTG	2 cut(s)	467, 729
BveI	ACCTGC	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	343, 791
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	1 cut(s)	384
Cfr10I	RCCGGY	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	529, 570, 637
ClaI	ATCGAT	1 cut(s)	441
CseI	GACGC	3 cut(s)	271, 295, 592
Csp6I	GTAC	3 cut(s)	328, 394, 922
CviQI	GTAC	3 cut(s)	328, 394, 922
DdeI	CTNAG	1 cut(s)	957
DpnI	GATC	6 cut(s)	404, 440, 464, 554, 596, 948
DpnII	GATC	6 cut(s)	402, 438, 462, 552, 594, 946
DraIII	CACNNNGTG	1 cut(s)	526
DrdI	GACNNNNNNGTC	1 cut(s)	245
DseDI	GACNNNNNNGTC	1 cut(s)	245
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
EciI	GGCGGA	1 cut(s)	61
Eco130I	CCWWGG	1 cut(s)	844
Eco47I	GGWCC	3 cut(s)	529, 570, 637
Eco72I	CACGTG	1 cut(s)	523
EcoO109I	RGGNCCY	1 cut(s)	637
EcoRII	CCWGG	3 cut(s)	396, 408, 532
EcoT14I	CCWWGG	1 cut(s)	844
ErhI	CCWWGG	1 cut(s)	844
Esp3I	CGTCTC	2 cut(s)	313, 575
FaiI	YATR	8 cut(s)	362, 422, 567, 723, 862, 915, 1001, 1021
FalI	AAGNNNNNCTT	4 cut(s)	158, 190, 968, 1000
FaqI	GGGAC	1 cut(s)	583
Fnu4HI	GCNGC	5 cut(s)	75, 286, 289, 319, 481
FokI	GGATG	2 cut(s)	515, 616
Fsp4HI	GCNGC	5 cut(s)	75, 286, 289, 319, 481
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	5 cut(s)	75, 286, 289, 319, 481
GsuI	CTGGAG	1 cut(s)	838
HaeIII	GGCC	3 cut(s)	341, 351, 823
HapII	CCGG	2 cut(s)	303, 342
HgaI	GACGC	3 cut(s)	271, 295, 592
HhaI	GCGC	1 cut(s)	384
Hin1I	GRCGYC	1 cut(s)	306
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	3 cut(s)	270, 683, 692
HpaII	CCGG	2 cut(s)	303, 342
HphI	GGTGA	7 cut(s)	10, 22, 28, 49, 124, 175, 241
Hpy166II	GTNNAC	4 cut(s)	493, 529, 963, 981
Hpy188I	TCNGA	3 cut(s)	269, 313, 594
Hpy188III	TCNNGA	3 cut(s)	166, 226, 817
Hpy8I	GTNNAC	4 cut(s)	493, 529, 963, 981
Hpy99I	CGWCG	1 cut(s)	350
HpyAV	CCTTC	4 cut(s)	91, 286, 599, 840
HpyCH4III	ACNGT	2 cut(s)	247, 544
HpyCH4IV	ACGT	2 cut(s)	392, 522
HpyCH4V	TGCA	8 cut(s)	90, 511, 547, 665, 838, 894, 981, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	297
HpyF3I	CTNAG	1 cut(s)	957
HpySE526I	ACGT	2 cut(s)	392, 522
Hsp92I	GRCGYC	1 cut(s)	306
HspAI	GCGC	1 cut(s)	382
KroI	GCCGGC	1 cut(s)	341
KroNI	GCCGGC	1 cut(s)	343
Kzo9I	GATC	6 cut(s)	402, 438, 462, 552, 594, 946
LmnI	GCTCC	6 cut(s)	30, 206, 270, 305, 537, 591
Lsp1109I	GCAGC	2 cut(s)	275, 467
LweI	GCATC	3 cut(s)	594, 674, 825
MaeII	ACGT	2 cut(s)	392, 522
MaeIII	GTNAC	3 cut(s)	247, 388, 699
MalI	GATC	6 cut(s)	404, 440, 464, 554, 596, 948
MboI	GATC	6 cut(s)	402, 438, 462, 552, 594, 946
MboII	GAAGA	3 cut(s)	166, 718, 873
MfeI	CAATTG	1 cut(s)	739
MflI	RGATCY	2 cut(s)	462, 946
MhlI	GDGCHC	3 cut(s)	542, 830, 983
MluCI	AATT	5 cut(s)	103, 739, 805, 857, 1008
MlyI	GAGTC	1 cut(s)	677
MmeI	TCCRAC	1 cut(s)	336
MroNI	GCCGGC	1 cut(s)	341
MseI	TTAA	3 cut(s)	414, 804, 986
MslI	CAYNNNNRTG	2 cut(s)	472, 784
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	2 cut(s)	303, 342
MspR9I	CCNGG	3 cut(s)	398, 410, 534
MunI	CAATTG	1 cut(s)	739
MvaI	CCWGG	3 cut(s)	398, 410, 534
MvnI	CGCG	2 cut(s)	382, 384
MwoI	GCNNNNNNNGC	1 cut(s)	297
NaeI	GCCGGC	1 cut(s)	343
NdeII	GATC	6 cut(s)	402, 438, 462, 552, 594, 946
NgoMIV	GCCGGC	1 cut(s)	341
NlaIV	GGNNCC	5 cut(s)	208, 301, 464, 531, 571
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	2 cut(s)	247, 388
OliI	CACNNNNGTG	1 cut(s)	472
PaqCI	CACCTGC	1 cut(s)	119
PasI	CCCWGGG	1 cut(s)	533
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PdiI	GCCGGC	1 cut(s)	343
PfeI	GAWTC	2 cut(s)	270, 692
PkrI	GCNGC	5 cut(s)	76, 287, 290, 320, 482
PleI	GAGTC	1 cut(s)	677
PmaCI	CACGTG	1 cut(s)	523
PmlI	CACGTG	1 cut(s)	523
PpsI	GAGTC	1 cut(s)	677
Ppu21I	YACGTR	2 cut(s)	393, 523
PpuMI	RGGWCCY	1 cut(s)	637
PsiI	TTATAA	1 cut(s)	1001
Psp5II	RGGWCCY	1 cut(s)	637
Psp6I	CCWGG	3 cut(s)	396, 408, 532
PspCI	CACGTG	1 cut(s)	523
PspGI	CCWGG	3 cut(s)	396, 408, 532
PspN4I	GGNNCC	5 cut(s)	208, 301, 464, 531, 571
PspPI	GGNCC	3 cut(s)	529, 570, 637
PspPPI	RGGWCCY	1 cut(s)	637
PstNI	CAGNNNCTG	1 cut(s)	457
PsuI	RGATCY	2 cut(s)	462, 946
RsaI	GTAC	3 cut(s)	329, 395, 923
RsaNI	GTAC	3 cut(s)	328, 394, 922
RseI	CAYNNNNRTG	2 cut(s)	472, 784
SaqAI	TTAA	3 cut(s)	414, 804, 986
SatI	GCNGC	5 cut(s)	75, 286, 289, 319, 481
Sau3AI	GATC	6 cut(s)	402, 438, 462, 552, 594, 946
Sau96I	GGNCC	3 cut(s)	529, 570, 637
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	3 cut(s)	398, 410, 534
SduI	GDGCHC	3 cut(s)	542, 830, 983
SfaNI	GCATC	3 cut(s)	594, 674, 825
SfcI	CTRYAG	1 cut(s)	913
SinI	GGWCC	3 cut(s)	529, 570, 637
SmiMI	CAYNNNNRTG	2 cut(s)	472, 784
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
Sse9I	AATT	5 cut(s)	103, 739, 805, 857, 1008
SsiI	CCGC	8 cut(s)	60, 72, 75, 193, 252, 286, 316, 319
StyD4I	CCNGG	3 cut(s)	396, 408, 532
StyI	CCWWGG	1 cut(s)	844
TaaI	ACNGT	2 cut(s)	247, 544
TaiI	ACGT	2 cut(s)	395, 525
TaqI	TCGA	6 cut(s)	126, 227, 354, 441, 690, 833
TasI	AATT	5 cut(s)	103, 739, 805, 857, 1008
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	3 cut(s)	77, 288, 321
TfiI	GAWTC	2 cut(s)	270, 692
Tru1I	TTAA	3 cut(s)	414, 804, 986
Tru9I	TTAA	3 cut(s)	414, 804, 986
TscAI	CASTG	2 cut(s)	474, 736
TseFI	GTSAC	2 cut(s)	247, 388
TseI	GCWGC	2 cut(s)	288, 480
Tsp45I	GTSAC	2 cut(s)	247, 388
TspDTI	ATGAA	1 cut(s)	633
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	2 cut(s)	474, 736
VneI	GTGCAC	1 cut(s)	979
VpaK11BI	GGWCC	3 cut(s)	529, 570, 637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.