Rh6AG241500

lysM domain-containing GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012394
Physical Location & Seq
Forward (+)
42775250 .. 42777738
2489 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG241500.1

Sequence Viewer

Length: 699 bp
ATGTCACAGCGTTTTTGGGGAATCGGTGGTAGTGATGAGGGTGTAAGGAGTGCTAGGCTCACACTCATTGAGTGGCTCACCTTGCTCCTCACCCTCCTCATCTCAACCCTCACCGCCCCCTCCTCCGCCGCCACCTTCAACTGCACTACCCCCTCCGCCAATTCCACTTGCCAATCCCTCATCGACTTCGCCCCCACAAACGCCACCACTCTCAACGACATCAAGACCCTCTTCAACATCACCCACCTCCGCACCTTACTCGGAGCCAACAACCTCCCCCTCTCGACCCGAACCGACGAACCTGTCACAGCCAACGGGAAGCTCCGAATCCCCTTCTCCCGCCGCTGCTTCAAAGGCTCCGGCATCTCCTACTGCCGCCCCCAGTACATTGTTAAGGCCGGCGACGGCCTCGACTACATAGCCACCAGCTTGTTCTCGAGCGTGGTCACGTACCGGGAGGTCACCCGGGTCAGTGGCATACCCGACCCGAATAAGATCGAGGTCGGGCAGAAGCTGTGGATCCCACTGCCCTGTAGCTGCGACAAAGTGGACAGCGAGGAAGTAGTGGTAGTGAATTACAGATACGTGGTGGACCCTGGGAGCTCGGTGCAGGGGAACTCCAAGGAGTATGGGACCACCGAAGAGACGCTCCTTCAGATCAATGGGATGCCTGACCCCACTGACCTCAAGGCTGGTTAG

Protein Analysis

232

Amino Acids

25.23

Weight (kDa)

5.89

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LysM PF01476 129 - 175 2.7e-06 LysM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012394)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17120
fragaria_vesca FvH4_2g16381
malus_domestica MD00G1083800.v1.1
prunus_persica Prupe.8G176700_v2.0.a1 Prupe.8G176700_v2.0.a1
pyrus_communis pycom05g12980
rosa_chinensis RchiOBHm_Chr6g0280171
rosa_laevigata RLG00000013080
rosa_multiflora Rmu_co8435311.1_g000001 Rmu_sc0007137.1_g000014
rosa_roxburghii Rroxscaffold_7G00188340
rosa_rugosa Rorug06G0130300 Rorug06G0130400
rosa_samantha Rh6AG240700 Rh6AG241500 Rh6BG244400 Rh6CG246000 Rh6DG237100
rosa_wichuraiana Rw6G020970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AciI CCGC 8 cut(s) 114, 126, 129, 156, 250, 340, 343, 376
AclWI GGATC 2 cut(s) 514, 527
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 2 cut(s) 386, 452
AgsI TTSAA 3 cut(s) 139, 235, 352
AjnI CCWGG 1 cut(s) 595
AluBI AGCT 5 cut(s) 322, 429, 514, 537, 603
AluI AGCT 5 cut(s) 322, 429, 514, 537, 603
Alw21I GWGCWC 1 cut(s) 605
Alw26I GTCTC 1 cut(s) 638
AlwI GGATC 2 cut(s) 514, 527
AlwNI CAGNNNCTG 1 cut(s) 514
Ama87I CYCGRG 2 cut(s) 436, 465
AoxI GGCC 2 cut(s) 396, 406
ApeKI GCWGC 2 cut(s) 345, 537
AspS9I GGNCC 2 cut(s) 592, 633
AsuC2I CCSGG 3 cut(s) 455, 466, 467
AsuHPI GGTGA 5 cut(s) 70, 82, 103, 232, 454
AvaI CYCGRG 2 cut(s) 436, 465
AvaII GGWCC 2 cut(s) 592, 633
BamHI GGATCC 1 cut(s) 519
BanII GRGCYC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 605
BbvI GCAGC 2 cut(s) 332, 524
BceAI ACGGC 1 cut(s) 421
BcgI CGANNNNNNTGC 2 cut(s) 241, 275
BciT130I CCWGG 1 cut(s) 597
BcnI CCSGG 3 cut(s) 455, 466, 467
BcoDI GTCTC 1 cut(s) 638
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 1 cut(s) 532
BisI GCNGC 5 cut(s) 129, 343, 346, 376, 538
BlsI GCNGC 5 cut(s) 130, 344, 347, 377, 539
Bme1390I CCNGG 4 cut(s) 455, 466, 467, 597
Bme18I GGWCC 2 cut(s) 592, 633
BmeT110I CYCGRG 2 cut(s) 436, 465
BmgT120I GGNCC 2 cut(s) 592, 633
BmiI GGNNCC 5 cut(s) 265, 358, 521, 594, 634
BmrFI CCNGG 4 cut(s) 455, 466, 467, 597
BmrI ACTGGG 1 cut(s) 376
BmsI GCATC 2 cut(s) 372, 657
BmuI ACTGGG 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 671
BpuMI CCSGG 3 cut(s) 455, 466, 467
BsaAI YACGTR 2 cut(s) 450, 586
BsaJI CCNNGG 4 cut(s) 465, 595, 596, 621
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 382
BseBI CCWGG 1 cut(s) 597
BseDI CCNNGG 4 cut(s) 465, 595, 596, 621
BseGI GGATG 1 cut(s) 672
BseNI ACTGG 1 cut(s) 382
BseRI GAGGAG 3 cut(s) 77, 86, 112
BseXI GCAGC 2 cut(s) 332, 524
BsgI GTGCAG 2 cut(s) 127, 629
BshFI GGCC 2 cut(s) 398, 408
BsiHKAI GWGCWC 1 cut(s) 605
BsiHKCI CYCGRG 2 cut(s) 436, 465
BsiSI CCGG 4 cut(s) 360, 399, 454, 466
BslFI GGGAC 1 cut(s) 646
BsmAI GTCTC 1 cut(s) 638
BsmBI CGTCTC 1 cut(s) 638
BsmFI GGGAC 1 cut(s) 646
BsnI GGCC 2 cut(s) 398, 408
BsoBI CYCGRG 2 cut(s) 436, 465
Bsp1286I GDGCHC 1 cut(s) 605
Bsp143I GATC 3 cut(s) 495, 519, 657
BspACI CCGC 8 cut(s) 114, 126, 129, 156, 250, 340, 343, 376
BspANI GGCC 2 cut(s) 398, 408
BspLI GGNNCC 5 cut(s) 265, 358, 521, 594, 634
BspPI GGATC 2 cut(s) 514, 527
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 1 cut(s) 382
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 465, 595, 596, 621
BssMI GATC 3 cut(s) 495, 519, 657
BssT1I CCWWGG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 597
Bst6I CTCTTC 2 cut(s) 236, 636
BstBAI YACGTR 2 cut(s) 450, 586
BstC8I GCNNGC 1 cut(s) 400
BstEII GGTNACC 1 cut(s) 460
BstF5I GGATG 1 cut(s) 672
BstKTI GATC 3 cut(s) 498, 522, 660
BstMAI GTCTC 1 cut(s) 638
BstMBI GATC 3 cut(s) 495, 519, 657
BstMWI GCNNNNNNNGC 2 cut(s) 82, 354
BstNI CCWGG 1 cut(s) 597
BstPI GGTNACC 1 cut(s) 460
BstSCI CCNGG 4 cut(s) 453, 464, 465, 595
BstSFI CTRYAG 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 332, 524
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
BsuRI GGCC 2 cut(s) 398, 408
BtsCI GGATG 1 cut(s) 672
BtsI GCAGTG 1 cut(s) 524
BtsIMutI CAGTG 3 cut(s) 478, 524, 678
Cac8I GCNNGC 1 cut(s) 400
CaiI CAGNNNCTG 1 cut(s) 514
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 2 cut(s) 592, 633
Cfr9I CCCGGG 1 cut(s) 465
CseI GACGC 1 cut(s) 655
Csp6I GTAC 2 cut(s) 385, 451
CviQI GTAC 2 cut(s) 385, 451
DpnI GATC 3 cut(s) 497, 521, 659
DpnII GATC 3 cut(s) 495, 519, 657
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 236, 636
EarI CTCTTC 2 cut(s) 236, 636
EciI GGCGGA 2 cut(s) 115, 145
Ecl136II GAGCTC 1 cut(s) 603
Eco130I CCWWGG 1 cut(s) 621
Eco24I GRGCYC 1 cut(s) 605
Eco47I GGWCC 2 cut(s) 592, 633
Eco53kI GAGCTC 1 cut(s) 603
Eco57I CTGAAG 1 cut(s) 638
Eco88I CYCGRG 2 cut(s) 436, 465
Eco91I GGTNACC 1 cut(s) 460
EcoICRI GAGCTC 1 cut(s) 603
EcoO65I GGTNACC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 621
EcoT38I GRGCYC 1 cut(s) 605
ErhI CCWWGG 1 cut(s) 621
Esp3I CGTCTC 1 cut(s) 638
FaiI YATR 3 cut(s) 419, 479, 630
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 1 cut(s) 646
FauI CCCGC 1 cut(s) 347
Fnu4HI GCNGC 5 cut(s) 129, 343, 346, 376, 538
FokI GGATG 1 cut(s) 679
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 5 cut(s) 129, 343, 346, 376, 538
FspBI CTAG 1 cut(s) 54
GluI GCNGC 5 cut(s) 129, 343, 346, 376, 538
HaeIII GGCC 2 cut(s) 398, 408
HapII CCGG 4 cut(s) 360, 399, 454, 466
HgaI GACGC 1 cut(s) 655
HinfI GANTC 2 cut(s) 21, 327
HpaII CCGG 4 cut(s) 360, 399, 454, 466
HphI GGTGA 5 cut(s) 70, 82, 103, 232, 454
Hpy166II GTNNAC 2 cut(s) 550, 592
Hpy188I TCNGA 3 cut(s) 263, 326, 657
Hpy188III TCNNGA 3 cut(s) 223, 283, 436
Hpy8I GTNNAC 2 cut(s) 550, 592
Hpy99I CGWCG 2 cut(s) 299, 407
HpyAV CCTTC 3 cut(s) 145, 343, 662
HpyCH4IV ACGT 2 cut(s) 449, 585
HpyCH4V TGCA 2 cut(s) 144, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 354
HpySE526I ACGT 2 cut(s) 449, 585
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
Kzo9I GATC 3 cut(s) 495, 519, 657
LmnI GCTCC 6 cut(s) 90, 263, 327, 362, 600, 654
Lsp1109I GCAGC 2 cut(s) 332, 524
LweI GCATC 2 cut(s) 372, 657
MaeI CTAG 1 cut(s) 54
MaeII ACGT 2 cut(s) 449, 585
MaeIII GTNAC 4 cut(s) 3, 304, 445, 460
MalI GATC 3 cut(s) 497, 521, 659
MboI GATC 3 cut(s) 495, 519, 657
MboII GAAGA 2 cut(s) 223, 653
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 605
MluCI AATT 2 cut(s) 160, 574
MroNI GCCGGC 1 cut(s) 398
MseI TTAA 1 cut(s) 393
MspA1I CMGCKG 1 cut(s) 345
MspI CCGG 4 cut(s) 360, 399, 454, 466
MspR9I CCNGG 4 cut(s) 455, 466, 467, 597
MvaI CCWGG 1 cut(s) 597
MwoI GCNNNNNNNGC 2 cut(s) 82, 354
NaeI GCCGGC 1 cut(s) 400
NciI CCSGG 3 cut(s) 455, 466, 467
NdeII GATC 3 cut(s) 495, 519, 657
NgoMIV GCCGGC 1 cut(s) 398
NlaIV GGNNCC 5 cut(s) 265, 358, 521, 594, 634
NmuCI GTSAC 4 cut(s) 3, 304, 445, 460
PaeR7I CTCGAG 1 cut(s) 436
PasI CCCWGGG 1 cut(s) 596
PdiI GCCGGC 1 cut(s) 400
PfeI GAWTC 2 cut(s) 21, 327
PkrI GCNGC 5 cut(s) 130, 344, 347, 377, 539
Ppu21I YACGTR 2 cut(s) 450, 586
Psp124BI GAGCTC 1 cut(s) 605
Psp6I CCWGG 1 cut(s) 595
PspEI GGTNACC 1 cut(s) 460
PspGI CCWGG 1 cut(s) 595
PspN4I GGNNCC 5 cut(s) 265, 358, 521, 594, 634
PspPI GGNCC 2 cut(s) 592, 633
PstNI CAGNNNCTG 1 cut(s) 514
PsuI RGATCY 1 cut(s) 519
RsaI GTAC 2 cut(s) 386, 452
RsaNI GTAC 2 cut(s) 385, 451
SacI GAGCTC 1 cut(s) 605
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 5 cut(s) 129, 343, 346, 376, 538
Sau3AI GATC 3 cut(s) 495, 519, 657
Sau96I GGNCC 2 cut(s) 592, 633
ScrFI CCNGG 4 cut(s) 455, 466, 467, 597
SduI GDGCHC 1 cut(s) 605
SfaNI GCATC 2 cut(s) 372, 657
SfcI CTRYAG 1 cut(s) 532
Sfr274I CTCGAG 1 cut(s) 436
SinI GGWCC 2 cut(s) 592, 633
SlaI CTCGAG 1 cut(s) 436
SmaI CCCGGG 1 cut(s) 467
SmlI CTYRAG 2 cut(s) 436, 686
SmoI CTYRAG 2 cut(s) 436, 686
Sse9I AATT 2 cut(s) 160, 574
SsiI CCGC 8 cut(s) 114, 126, 129, 156, 250, 340, 343, 376
SspMI CTAG 1 cut(s) 54
SstI GAGCTC 1 cut(s) 605
StyD4I CCNGG 4 cut(s) 453, 464, 465, 595
StyI CCWWGG 1 cut(s) 621
TaiI ACGT 2 cut(s) 452, 588
TaqI TCGA 5 cut(s) 183, 284, 411, 437, 498
TasI AATT 2 cut(s) 160, 574
TatI WGTACW 1 cut(s) 384
TauI GCSGC 3 cut(s) 131, 345, 378
TfiI GAWTC 2 cut(s) 21, 327
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 3 cut(s) 478, 531, 685
TseFI GTSAC 4 cut(s) 3, 304, 445, 460
TseI GCWGC 2 cut(s) 345, 537
Tsp45I GTSAC 4 cut(s) 3, 304, 445, 460
TspMI CCCGGG 1 cut(s) 465
TspRI CASTG 3 cut(s) 478, 531, 685
VpaK11BI GGWCC 2 cut(s) 592, 633
XhoI CTCGAG 1 cut(s) 436
XmaI CCCGGG 1 cut(s) 465
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.