Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012394

Physical Location & Seq

Genomic Coordinates Forward (+)

17870863 .. 17873406

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G176700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGCTTTCTCTTTCTCTCTCTCCACACCCACCATACCCACACTCCTCTTCACCCTCTCCCTCCTCCTCTCATTTCTCACCACACCCGCCTCCTCCGCCACCTTCAACTGCTCCGCCACCACCACCTGCCAGTCCCTCATCGACTACGTCCCCGAAAATACCACAACCCTCAACGCCATCAAAACCCTCTTCAACATCTCCCACCTCCGCACCCTTCTCGGAGCCAACAACCTCCCCCTCTCCACCGCCCCGACCCAAAACGTAACCGCCCTCCAAAAGATCCTCATCCCTTTCACGTGCCTCTGCTCCAACGGCACCGGCGTCTCCAACAAGCGCCCGCAGTACATCGTGAAGCCCGGCGACGACCTCGACCACATCGCTACGGTCGTGTTCTCGAGGCTCGTGAAGTACCAGGAAATTGCGGCGGTGAATAATATTCCCGACCCGAGTCTGATTGGAATCGGAAAGAAGTTGTGGATCCCGCTGCCGTGCAGCTGCGACGAGGTGAACGGCGAGAGGGTGGTTCATTATGGACACGTGGTGGAAGCTGGGAGCTCGGTGGAGGCAATCGCGACCAAGTACGGGACGGACCAGGAGACTCTGCTGAGGATCAATGGCATTGCAGATCCCAAGACCCTTCAGGCCAATCAAGTCCTCGATGTTCCTCTCAAAGCTTGTTCATCTTCGGTATCGAATAACTCATTAGATGCCCCGTTACTTGTTTCCAACAACACCTACGTCTTCACTGCCAACAATTGCGTGAAATGCCAGTGTAGTCCTGCGAACAATTGGACCTTGCAATGTGAGCCATCCACTGTGAATTCAACTGGATGCCCTGCGATGCAATGCCAAGGTTCGAGTCAGCTATTTCTTGGCAACACCACGACTTCCGGTTGCGATCAAACAACCTGTACCTATGCTGGTTATACTAACAAGACCAATATTCTTACAACCCTGGCAACACAGTCCACTTGTGCAGCTCCTCCTCCTGATAATAATAACAACGCATCAAGGATGGGTTTGCAAGGCTCCAGTTGGAGCTTCCTTTTCGCGGCAATTCACTTGGCGCTTCTTCTTCTTCATGTTCTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0008061 GO:0008144 GO:0009506 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944 GO:0097367

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM

Protein Analysis

365

Amino Acids

38.83

Weight (kDa)

6.28

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012394)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17120
fragaria_vesca	FvH4_2g16381
malus_domestica	MD00G1083800.v1.1
prunus_persica	Prupe.8G176700_v2.0.a1 Prupe.8G176700_v2.0.a1
pyrus_communis	pycom05g12980
rosa_chinensis	RchiOBHm_Chr6g0280171
rosa_laevigata	RLG00000013080
rosa_multiflora	Rmu_co8435311.1_g000001 Rmu_sc0007137.1_g000014
rosa_roxburghii	Rroxscaffold_7G00188340
rosa_rugosa	Rorug06G0130300 Rorug06G0130400
rosa_samantha	Rh6AG240700 Rh6AG241500 Rh6BG244400 Rh6CG246000 Rh6DG237100
rosa_wichuraiana	Rw6G020970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	134
AccB1I	GGYRCC	1 cut(s)	314
AccII	CGCG	2 cut(s)	572, 1052
AclWI	GGATC	5 cut(s)	274, 472, 485, 617, 620
AcsI	RAATTY	1 cut(s)	820
AcuI	CTGAAG	2 cut(s)	623, 1073
AcvI	CACGTG	2 cut(s)	297, 538
AcyI	GRCGYC	1 cut(s)	321
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	4 cut(s)	344, 410, 581, 913
AfiI	CCNNNNNNNGG	2 cut(s)	582, 1051
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	3 cut(s)	106, 193, 825
AjnI	CCWGG	3 cut(s)	411, 591, 954
AluBI	AGCT	7 cut(s)	495, 548, 555, 674, 865, 980, 1041
AluI	AGCT	7 cut(s)	495, 548, 555, 674, 865, 980, 1041
Alw21I	GWGCWC	1 cut(s)	557
Alw26I	GTCTC	2 cut(s)	328, 590
AlwI	GGATC	5 cut(s)	274, 472, 485, 617, 620
Ama87I	CYCGRG	2 cut(s)	394, 445
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	4 cut(s)	484, 492, 495, 977
ApoI	RAATTY	1 cut(s)	820
AspLEI	GCGC	2 cut(s)	336, 1069
AspS9I	GGNCC	2 cut(s)	589, 792
AsuC2I	CCSGG	1 cut(s)	357
AsuHPI	GGTGA	4 cut(s)	43, 70, 439, 517
AvaI	CYCGRG	2 cut(s)	394, 445
AvaII	GGWCC	2 cut(s)	589, 792
BamHI	GGATCC	1 cut(s)	477
BanI	GGYRCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	557
BauI	CACGAG	1 cut(s)	401
BbrPI	CACGTG	2 cut(s)	297, 538
BbsI	GAAGAC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	557
BbvCI	CCTCAGC	1 cut(s)	605
BbvI	GCAGC	4 cut(s)	471, 482, 504, 989
BccI	CCATC	3 cut(s)	185, 817, 1009
BceAI	ACGGC	3 cut(s)	328, 472, 526
BcgI	CGANNNNNNTGC	2 cut(s)	199, 233
BciT130I	CCWGG	3 cut(s)	413, 593, 956
BcnI	CCSGG	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	328, 590
BfoI	RGCGCY	2 cut(s)	337, 1070
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	6 cut(s)	423, 485, 493, 496, 978, 1053
BlsI	GCNGC	6 cut(s)	424, 486, 494, 497, 979, 1054
Bme1390I	CCNGG	4 cut(s)	357, 413, 593, 956
Bme18I	GGWCC	2 cut(s)	589, 792
BmeT110I	CYCGRG	2 cut(s)	394, 445
BmgT120I	GGNCC	2 cut(s)	589, 792
BmiI	GGNNCC	4 cut(s)	223, 316, 479, 1030
BmrFI	CCNGG	4 cut(s)	357, 413, 593, 956
BmsI	GCATC	4 cut(s)	697, 821, 831, 1016
BoxI	GACNNNNGTC	1 cut(s)	447
BpiI	GAAGAC	1 cut(s)	733
BpmI	CTGGAG	1 cut(s)	1015
Bpu10I	CCTNAGC	1 cut(s)	605
BpuMI	CCSGG	1 cut(s)	357
BsaAI	YACGTR	2 cut(s)	297, 538
BsaBI	GATNNNNATC	2 cut(s)	284, 458
BsaHI	GRCGYC	1 cut(s)	321
BsaJI	CCNNGG	2 cut(s)	850, 954
BsaWI	WCCGGW	1 cut(s)	890
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	582, 1051
Bse118I	RCCGGY	1 cut(s)	317
Bse1I	ACTGG	4 cut(s)	130, 769, 832, 1032
Bse3DI	GCAATG	3 cut(s)	618, 806, 851
Bse8I	GATNNNNATC	2 cut(s)	284, 458
BseBI	CCWGG	3 cut(s)	413, 593, 956
BseDI	CCNNGG	2 cut(s)	850, 954
BseGI	GGATG	4 cut(s)	285, 809, 836, 1020
BseJI	GATNNNNATC	2 cut(s)	284, 458
BseLI	CCNNNNNNNGG	2 cut(s)	582, 1051
BseMI	GCAATG	3 cut(s)	618, 806, 851
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	4 cut(s)	130, 769, 832, 1032
BseRI	GAGGAG	6 cut(s)	35, 53, 56, 82, 972, 975
BseXI	GCAGC	4 cut(s)	471, 482, 504, 989
BseYI	CCCAGC	1 cut(s)	548
BsgI	GTGCAG	2 cut(s)	511, 996
Bsh1236I	CGCG	2 cut(s)	572, 1052
Bsh1285I	CGRYCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	644
BshNI	GGYRCC	1 cut(s)	314
BsiEI	CGRYCG	1 cut(s)	387
BsiHKAI	GWGCWC	1 cut(s)	557
BsiHKCI	CYCGRG	2 cut(s)	394, 445
BsiSI	CCGG	3 cut(s)	318, 357, 891
BslFI	GGGAC	3 cut(s)	118, 134, 598
BslI	CCNNNNNNNGG	2 cut(s)	582, 1051
BsmAI	GTCTC	2 cut(s)	328, 590
BsmBI	CGTCTC	1 cut(s)	328
BsmFI	GGGAC	3 cut(s)	118, 134, 598
BsnI	GGCC	1 cut(s)	644
BsoBI	CYCGRG	2 cut(s)	394, 445
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	5 cut(s)	279, 477, 609, 625, 898
Bsp68I	TCGCGA	1 cut(s)	572
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	1 cut(s)	597
BspFNI	CGCG	2 cut(s)	572, 1052
BspLI	GGNNCC	4 cut(s)	223, 316, 479, 1030
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	5 cut(s)	274, 472, 485, 617, 620
BspT107I	GGYRCC	1 cut(s)	314
BsrDI	GCAATG	3 cut(s)	618, 806, 851
BsrFI	RCCGGY	1 cut(s)	317
BsrI	ACTGG	4 cut(s)	130, 769, 832, 1032
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	850, 954
BssMI	GATC	5 cut(s)	279, 477, 609, 625, 898
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	401
BssT1I	CCWWGG	1 cut(s)	850
Bst2BI	CACGAG	1 cut(s)	401
Bst2UI	CCWGG	3 cut(s)	413, 593, 956
Bst4CI	ACNGT	3 cut(s)	385, 817, 966
Bst6I	CTCTTC	2 cut(s)	53, 194
BstACI	GRCGYC	1 cut(s)	321
BstBAI	YACGTR	2 cut(s)	297, 538
BstC8I	GCNNGC	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	605
BstF5I	GGATG	4 cut(s)	285, 809, 836, 1020
BstFNI	CGCG	2 cut(s)	572, 1052
BstH2I	RGCGCY	2 cut(s)	337, 1070
BstHHI	GCGC	2 cut(s)	336, 1069
BstKTI	GATC	5 cut(s)	282, 480, 612, 628, 901
BstMAI	GTCTC	2 cut(s)	328, 590
BstMBI	GATC	5 cut(s)	279, 477, 609, 625, 898
BstMCI	CGRYCG	1 cut(s)	387
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 312, 765, 805
BstNI	CCWGG	3 cut(s)	413, 593, 956
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	4 cut(s)	355, 411, 591, 954
BstUI	CGCG	2 cut(s)	572, 1052
BstV1I	GCAGC	4 cut(s)	471, 482, 504, 989
BstV2I	GAAGAC	1 cut(s)	733
BstX2I	RGATCY	3 cut(s)	279, 477, 625
BstYI	RGATCY	3 cut(s)	279, 477, 625
BsuRI	GGCC	1 cut(s)	644
BtgZI	GCGATG	2 cut(s)	361, 854
BtsCI	GGATG	4 cut(s)	285, 809, 836, 1020
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	3 cut(s)	744, 776, 813
BtuMI	TCGCGA	1 cut(s)	572
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	1 cut(s)	338
CfoI	GCGC	2 cut(s)	336, 1069
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	589, 792
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	4 cut(s)	343, 409, 580, 912
CviAII	CATG	1 cut(s)	1082
CviQI	GTAC	4 cut(s)	343, 409, 580, 912
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	5 cut(s)	281, 479, 611, 627, 900
DpnII	GATC	5 cut(s)	279, 477, 609, 625, 898
DraIII	CACNNNGTG	1 cut(s)	541
Eam1104I	CTCTTC	2 cut(s)	53, 194
EarI	CTCTTC	2 cut(s)	53, 194
EciI	GGCGGA	2 cut(s)	85, 103
Ecl136II	GAGCTC	1 cut(s)	555
Eco130I	CCWWGG	1 cut(s)	850
Eco24I	GRGCYC	1 cut(s)	557
Eco47I	GGWCC	2 cut(s)	589, 792
Eco53kI	GAGCTC	1 cut(s)	555
Eco57I	CTGAAG	2 cut(s)	623, 1073
Eco72I	CACGTG	2 cut(s)	297, 538
Eco88I	CYCGRG	2 cut(s)	394, 445
EcoICRI	GAGCTC	1 cut(s)	555
EcoRI	GAATTC	1 cut(s)	820
EcoRII	CCWGG	3 cut(s)	411, 591, 954
EcoT14I	CCWWGG	1 cut(s)	850
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	850
Esp3I	CGTCTC	1 cut(s)	328
FaeI	CATG	1 cut(s)	1085
FaiI	YATR	5 cut(s)	35, 531, 918, 927, 1083
FaqI	GGGAC	3 cut(s)	118, 134, 598
FatI	CATG	1 cut(s)	1081
FauI	CCCGC	3 cut(s)	94, 345, 489
Fnu4HI	GCNGC	6 cut(s)	423, 485, 493, 496, 978, 1053
FokI	GGATG	4 cut(s)	272, 796, 843, 1027
FriOI	GRGCYC	1 cut(s)	557
Fsp4HI	GCNGC	6 cut(s)	423, 485, 493, 496, 978, 1053
GlaI	GCGC	2 cut(s)	335, 1068
GluI	GCNGC	6 cut(s)	423, 485, 493, 496, 978, 1053
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	1015
HaeII	RGCGCY	2 cut(s)	337, 1070
HaeIII	GGCC	1 cut(s)	644
HapII	CCGG	3 cut(s)	318, 357, 891
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	2 cut(s)	336, 1069
Hin1I	GRCGYC	1 cut(s)	321
Hin1II	CATG	1 cut(s)	1085
Hin6I	GCGC	2 cut(s)	334, 1067
HinP1I	GCGC	2 cut(s)	334, 1067
HindIII	AAGCTT	1 cut(s)	672
HinfI	GANTC	4 cut(s)	448, 459, 598, 859
HpaII	CCGG	3 cut(s)	318, 357, 891
HphI	GGTGA	4 cut(s)	43, 70, 439, 517
Hpy166II	GTNNAC	2 cut(s)	508, 969
Hpy188I	TCNGA	3 cut(s)	221, 453, 464
Hpy188III	TCNNGA	6 cut(s)	349, 394, 403, 440, 571, 989
Hpy8I	GTNNAC	2 cut(s)	508, 969
Hpy99I	CGWCG	2 cut(s)	365, 503
HpyAV	CCTTC	3 cut(s)	112, 224, 647
HpyCH4III	ACNGT	3 cut(s)	385, 817, 966
HpyCH4IV	ACGT	5 cut(s)	147, 261, 296, 537, 738
HpyCH4V	TGCA	6 cut(s)	492, 623, 799, 844, 977, 1024
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 312, 765, 805
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	5 cut(s)	147, 261, 296, 537, 738
Hsp92I	GRCGYC	1 cut(s)	321
Hsp92II	CATG	1 cut(s)	1085
HspAI	GCGC	2 cut(s)	334, 1067
Kzo9I	GATC	5 cut(s)	279, 477, 609, 625, 898
LmnI	GCTCC	7 cut(s)	116, 221, 311, 552, 985, 1034, 1038
Lsp1109I	GCAGC	4 cut(s)	471, 482, 504, 989
LweI	GCATC	4 cut(s)	697, 821, 831, 1016
MaeII	ACGT	5 cut(s)	147, 261, 296, 537, 738
MaeIII	GTNAC	2 cut(s)	262, 714
MalI	GATC	5 cut(s)	281, 479, 611, 627, 900
MboI	GATC	5 cut(s)	279, 477, 609, 625, 898
MboII	GAAGA	8 cut(s)	40, 181, 675, 733, 1064, 1067, 1070, 1079
MfeI	CAATTG	2 cut(s)	754, 787
MflI	RGATCY	3 cut(s)	279, 477, 625
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	5 cut(s)	417, 754, 787, 820, 1056
MlyI	GAGTC	3 cut(s)	457, 592, 868
MmeI	TCCRAC	4 cut(s)	333, 351, 750, 1016
MspA1I	CMGCKG	2 cut(s)	484, 495
MspI	CCGG	3 cut(s)	318, 357, 891
MspR9I	CCNGG	4 cut(s)	357, 413, 593, 956
MunI	CAATTG	2 cut(s)	754, 787
MvaI	CCWGG	3 cut(s)	413, 593, 956
MvnI	CGCG	2 cut(s)	572, 1052
MwoI	GCNNNNNNNGC	4 cut(s)	95, 312, 765, 805
NciI	CCSGG	1 cut(s)	357
NdeII	GATC	5 cut(s)	279, 477, 609, 625, 898
NlaIII	CATG	1 cut(s)	1085
NlaIV	GGNNCC	4 cut(s)	223, 316, 479, 1030
NruI	TCGCGA	1 cut(s)	572
PaeR7I	CTCGAG	1 cut(s)	394
PaqCI	CACCTGC	1 cut(s)	134
PcsI	WCGNNNNNNNCGW	2 cut(s)	318, 384
PfeI	GAWTC	1 cut(s)	459
PflFI	GACNNNGTC	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	424, 486, 494, 497, 979, 1054
PleI	GAGTC	3 cut(s)	456, 592, 867
PmaCI	CACGTG	2 cut(s)	297, 538
PmlI	CACGTG	2 cut(s)	297, 538
PpsI	GAGTC	3 cut(s)	456, 592, 867
Ppu21I	YACGTR	2 cut(s)	297, 538
PshAI	GACNNNNGTC	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	557
Psp6I	CCWGG	3 cut(s)	411, 591, 954
PspCI	CACGTG	2 cut(s)	297, 538
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	3 cut(s)	411, 591, 954
PspN4I	GGNNCC	4 cut(s)	223, 316, 479, 1030
PspPI	GGNCC	2 cut(s)	589, 792
PsuI	RGATCY	3 cut(s)	279, 477, 625
PsyI	GACNNNGTC	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	495
RruI	TCGCGA	1 cut(s)	572
RsaI	GTAC	4 cut(s)	344, 410, 581, 913
RsaNI	GTAC	4 cut(s)	343, 409, 580, 912
SacI	GAGCTC	1 cut(s)	557
SatI	GCNGC	6 cut(s)	423, 485, 493, 496, 978, 1053
Sau3AI	GATC	5 cut(s)	279, 477, 609, 625, 898
Sau96I	GGNCC	2 cut(s)	589, 792
SchI	GAGTC	3 cut(s)	457, 592, 868
ScrFI	CCNGG	4 cut(s)	357, 413, 593, 956
SduI	GDGCHC	1 cut(s)	557
SfaNI	GCATC	4 cut(s)	697, 821, 831, 1016
Sfr274I	CTCGAG	1 cut(s)	394
SgrAI	CRCCGGYG	1 cut(s)	317
SinI	GGWCC	2 cut(s)	589, 792
SlaI	CTCGAG	1 cut(s)	394
SmlI	CTYRAG	1 cut(s)	394
SmoI	CTYRAG	1 cut(s)	394
Sse9I	AATT	5 cut(s)	417, 754, 787, 820, 1056
SspI	AATATT	2 cut(s)	436, 943
SstI	GAGCTC	1 cut(s)	557
StyD4I	CCNGG	4 cut(s)	355, 411, 591, 954
StyI	CCWWGG	1 cut(s)	850
TaaI	ACNGT	3 cut(s)	385, 817, 966
TaiI	ACGT	5 cut(s)	150, 264, 299, 540, 741
TaqI	TCGA	6 cut(s)	141, 369, 395, 657, 692, 857
TasI	AATT	5 cut(s)	417, 754, 787, 820, 1056
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	2 cut(s)	425, 1055
TfiI	GAWTC	1 cut(s)	459
TscAI	CASTG	3 cut(s)	751, 776, 820
TseI	GCWGC	4 cut(s)	484, 492, 495, 977
TspDTI	ATGAA	3 cut(s)	515, 669, 1070
TspGWI	ACGGA	1 cut(s)	602
TspRI	CASTG	3 cut(s)	751, 776, 820
Tth111I	GACNNNGTC	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	589, 792
XapI	RAATTY	1 cut(s)	820
XhoI	CTCGAG	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.