AT2G17320

BEST Arabidopsis thaliana protein match is Uncharacterised conserved protein (UCP030210) (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011219
Physical Location & Seq
Reverse (-)
7533455 .. 7536004
2550 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17320.1

Sequence Viewer

Length: 1086 bp
ATGATTCCGTTTCCTCTGTTACCAACGCCGATTGAAACCAACTACAGAGCTTGCACCATTCCTTATAGATTCCCTTCCGATAATCTCAAGAAAGCCACTCCTACTGAAATCTCCTGGATCAACGTCTTCGCCAATTCCATTCCTTCTTTCAAGAAACGTGCAGAGAGCGATACCAGTGTTCCAGATGCTCCTGCTAGAGCTAAAATTTTTGAACAAAGATATGCGGGATTTCTTGAAGGCTGGAAGAAAGATCCAGAGAGTAATGGTGGGCCACCAGATGGTGTTATTCTCGGCCGAGTTCGTGAGCATTTACTCAGAGAGTTAGGATTTAGGGACATATTCAAGAAAGTCAAGGATGAGGAGAATGCAAAGGCTATATCACTATTTCCTGAAGTTGTCAGTCTGAGTGATGCTATTGAAGATGACGGAGAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAAACATCTTTGATCTTGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAGGGATGGCATATCTTTCTTGGCTACCTCTCAAAACTTGGTTCCACGACCATGGGTCATCGATGACTTGAACAAGTTCCAAGCCAAATGGGTCAAGAAGCCTTGGAAGAAGGCAGTGATTTTTGTTGATAATTCTGGTGCAGACATAATTTTGGGTATTTTGCCTTTCGCAAGAGAGTTGCTCCGTCGAGGAATTCAGGTGGTGCTAGCTGCTAACGAGCTGCCAGCTATCAACGATGTAACATATACTGAGCTTACAGATATCGTGTCGCAGTTAAAGGATGGAAATGGCCAATTGATAGGCGTTGATACTTCAAAGCTTCTGATTGCAAATTCAGGGAACGATTTAGCGGTTATTGATCTCTCAAGAGTATCGCACGAGCTTGCTTACCTTTCATCTGATGCAGACTTAGTCATCCTAGAAGGCATGGGTCGCGGGATCGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATCGGAATGGTGAAGCACGTTGAAGTAGCACAGTTTCTCGGAGGACGACTTTACGACTGTGTCTTTAAATTCAATGAAGTTCAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

361

Amino Acids

40.07

Weight (kDa)

5.27

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 44 - 353 2.6e-62 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 278
AccII CGCG 1 cut(s) 948
AciI CCGC 3 cut(s) 224, 863, 948
AclWI GGATC 3 cut(s) 125, 245, 959
AcoI YGGCCR 2 cut(s) 292, 802
AcsI RAATTY 5 cut(s) 204, 442, 705, 844, 1064
AcuI CTGAAG 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 278
AhdI GACNNNNNGTC 1 cut(s) 566
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 9 cut(s) 50, 200, 496, 722, 733, 740, 766, 832, 895
AluI AGCT 9 cut(s) 50, 200, 496, 722, 733, 740, 766, 832, 895
Alw26I GTCTC 1 cut(s) 950
AlwI GGATC 3 cut(s) 125, 245, 959
AoxI GGCC 3 cut(s) 269, 292, 802
ApeKI GCWGC 2 cut(s) 722, 733
ApoI RAATTY 5 cut(s) 204, 442, 705, 844, 1064
Asp700I GAANNNNTTC 1 cut(s) 587
AspS9I GGNCC 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 460, 1018
AsuNHI GCTAGC 1 cut(s) 718
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BalI TGGCCA 1 cut(s) 804
BauI CACGAG 1 cut(s) 890
BbsI GAAGAC 1 cut(s) 118
BbvCI CCTCAGC 1 cut(s) 501
BbvI GCAGC 2 cut(s) 709, 720
BccI CCATC 3 cut(s) 272, 512, 788
BciT130I CCWGG 1 cut(s) 115
BcoDI GTCTC 1 cut(s) 950
BfaI CTAG 3 cut(s) 195, 719, 932
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 2 cut(s) 723, 734
BlsI GCNGC 2 cut(s) 724, 735
Bme1390I CCNGG 1 cut(s) 115
BmeRI GACNNNNNGTC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 115
BmsI GCATC 3 cut(s) 175, 400, 904
BmtI GCTAGC 1 cut(s) 722
BpiI GAAGAC 1 cut(s) 118
BplI GAGNNNNNCTC 4 cut(s) 494, 526, 678, 710
Bpu10I CCTNAGC 1 cut(s) 501
BpuEI CTTGAG 4 cut(s) 71, 496, 862, 977
Bsa29I ATCGAT 1 cut(s) 573
BsaJI CCNNGG 2 cut(s) 563, 614
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse1I ACTGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 115
BseCI ATCGAT 1 cut(s) 573
BseDI CCNNGG 2 cut(s) 563, 614
BseGI GGATG 4 cut(s) 361, 523, 799, 927
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMII CTCAG 5 cut(s) 328, 395, 492, 753, 986
BseNI ACTGG 1 cut(s) 174
BseRI GAGGAG 1 cut(s) 374
BseX3I CGGCCG 1 cut(s) 292
BseXI GCAGC 2 cut(s) 709, 720
BsgI GTGCAG 3 cut(s) 180, 474, 672
Bsh1236I CGCG 1 cut(s) 948
Bsh1285I CGRYCG 1 cut(s) 295
BshFI GGCC 3 cut(s) 271, 294, 804
BshVI ATCGAT 1 cut(s) 573
BsiEI CGRYCG 1 cut(s) 295
BslFI GGGAC 1 cut(s) 347
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 950
BsmFI GGGAC 1 cut(s) 347
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 3 cut(s) 271, 294, 804
Bsp143I GATC 6 cut(s) 117, 250, 478, 871, 951, 996
Bsp19I CCATGG 1 cut(s) 563
BspACI CCGC 3 cut(s) 224, 863, 948
BspANI GGCC 3 cut(s) 271, 294, 804
BspCNI CTCAG 5 cut(s) 327, 396, 493, 754, 985
BspDI ATCGAT 1 cut(s) 573
BspFNI CGCG 1 cut(s) 948
BspLI GGNNCC 1 cut(s) 555
BspOI GCTAGC 1 cut(s) 722
BspPI GGATC 3 cut(s) 125, 245, 959
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 2 cut(s) 563, 614
BssMI GATC 6 cut(s) 117, 250, 478, 871, 951, 996
BssSI CACGAG 1 cut(s) 890
BssT1I CCWWGG 2 cut(s) 563, 614
Bst2BI CACGAG 1 cut(s) 890
Bst2UI CCWGG 1 cut(s) 115
Bst4CI ACNGT 3 cut(s) 435, 1029, 1055
BstAPI GCANNNNNTGC 1 cut(s) 497
BstC8I GCNNGC 5 cut(s) 52, 498, 720, 738, 897
BstDEI CTNAG 6 cut(s) 314, 404, 501, 762, 922, 972
BstDSI CCRYGG 1 cut(s) 563
BstF5I GGATG 4 cut(s) 361, 523, 799, 927
BstFNI CGCG 1 cut(s) 948
BstKTI GATC 6 cut(s) 120, 253, 481, 874, 954, 999
BstMAI GTCTC 1 cut(s) 950
BstMBI GATC 6 cut(s) 117, 250, 478, 871, 951, 996
BstMCI CGRYCG 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 497, 945
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 1 cut(s) 113
BstSFI CTRYAG 1 cut(s) 43
BstUI CGCG 1 cut(s) 948
BstV1I GCAGC 2 cut(s) 709, 720
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 250
BstXI CCANNNNNNTGG 1 cut(s) 564
BstYI RGATCY 1 cut(s) 250
BstZI CGGCCG 1 cut(s) 292
Bsu15I ATCGAT 1 cut(s) 573
BsuRI GGCC 3 cut(s) 271, 294, 804
BsuTUI ATCGAT 1 cut(s) 573
BtgI CCRYGG 1 cut(s) 563
BtsCI GGATG 4 cut(s) 361, 523, 799, 927
BtsI GCAGTG 1 cut(s) 633
BtsIMutI CAGTG 2 cut(s) 181, 633
Cac8I GCNNGC 5 cut(s) 52, 498, 720, 738, 897
Cfr13I GGNCC 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 573
CviAII CATG 2 cut(s) 564, 940
DdeI CTNAG 6 cut(s) 314, 404, 501, 762, 922, 972
DpnI GATC 6 cut(s) 119, 252, 480, 873, 953, 998
DpnII GATC 6 cut(s) 117, 250, 478, 871, 951, 996
DraI TTTAAA 1 cut(s) 1063
DriI GACNNNNNGTC 1 cut(s) 566
EaeI YGGCCR 2 cut(s) 292, 802
EagI CGGCCG 1 cut(s) 292
Eam1105I GACNNNNNGTC 1 cut(s) 566
EclXI CGGCCG 1 cut(s) 292
Eco130I CCWWGG 2 cut(s) 563, 614
Eco32I GATATC 1 cut(s) 775
Eco52I CGGCCG 1 cut(s) 292
Eco57I CTGAAG 1 cut(s) 411
EcoRI GAATTC 1 cut(s) 705
EcoRII CCWGG 1 cut(s) 113
EcoRV GATATC 1 cut(s) 775
EcoT14I CCWWGG 2 cut(s) 563, 614
ErhI CCWWGG 2 cut(s) 563, 614
FaeI CATG 2 cut(s) 567, 943
FaqI GGGAC 1 cut(s) 347
FatI CATG 2 cut(s) 563, 939
FauI CCCGC 2 cut(s) 217, 941
Fnu4HI GCNGC 2 cut(s) 723, 734
FokI GGATG 4 cut(s) 368, 530, 806, 914
Fsp4HI GCNGC 2 cut(s) 723, 734
FspBI CTAG 3 cut(s) 195, 719, 932
GluI GCNGC 2 cut(s) 723, 734
HaeIII GGCC 3 cut(s) 271, 294, 804
Hin1II CATG 2 cut(s) 567, 943
HindIII AAGCTT 1 cut(s) 830
HinfI GANTC 3 cut(s) 4, 69, 986
HphI GGTGA 2 cut(s) 460, 1018
Hpy188I TCNGA 8 cut(s) 79, 317, 405, 837, 913, 1001, 1037, 1080
Hpy99I CGWCG 1 cut(s) 702
HpyAV CCTTC 5 cut(s) 84, 153, 230, 616, 929
HpyCH4III ACNGT 3 cut(s) 435, 1029, 1055
HpyCH4IV ACGT 3 cut(s) 123, 157, 1014
HpyCH4V TGCA 7 cut(s) 54, 161, 368, 491, 653, 842, 917
HpyF10VI GCNNNNNNNGC 2 cut(s) 497, 945
HpyF3I CTNAG 6 cut(s) 314, 404, 501, 762, 922, 972
HpySE526I ACGT 3 cut(s) 123, 157, 1014
Hsp92II CATG 2 cut(s) 567, 943
Kzo9I GATC 6 cut(s) 117, 250, 478, 871, 951, 996
LmnI GCTCC 2 cut(s) 193, 699
Lsp1109I GCAGC 2 cut(s) 709, 720
LweI GCATC 3 cut(s) 175, 400, 904
MaeI CTAG 3 cut(s) 195, 719, 932
MaeII ACGT 3 cut(s) 123, 157, 1014
MaeIII GTNAC 2 cut(s) 18, 751
MalI GATC 6 cut(s) 119, 252, 480, 873, 953, 998
MboI GATC 6 cut(s) 117, 250, 478, 871, 951, 996
MboII GAAGA 4 cut(s) 118, 256, 431, 631
MfeI CAATTG 1 cut(s) 806
MflI RGATCY 1 cut(s) 250
MlsI TGGCCA 1 cut(s) 804
MluCI AATT 9 cut(s) 133, 204, 442, 643, 660, 705, 806, 844, 1064
MluNI TGGCCA 1 cut(s) 804
MnlI CCTC 7 cut(s) 24, 352, 446, 496, 550, 695, 1031
Mox20I TGGCCA 1 cut(s) 804
MroXI GAANNNNTTC 1 cut(s) 587
MscI TGGCCA 1 cut(s) 804
MseI TTAA 3 cut(s) 788, 1062, 1084
MslI CAYNNNNRTG 1 cut(s) 562
Msp20I TGGCCA 1 cut(s) 804
MspR9I CCNGG 1 cut(s) 115
MunI CAATTG 1 cut(s) 806
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 948
MwoI GCNNNNNNNGC 2 cut(s) 497, 945
NcoI CCATGG 1 cut(s) 563
NdeII GATC 6 cut(s) 117, 250, 478, 871, 951, 996
NheI GCTAGC 1 cut(s) 718
NlaIII CATG 2 cut(s) 567, 943
NlaIV GGNNCC 1 cut(s) 555
NmeAIII GCCGAG 2 cut(s) 270, 320
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 587
PfeI GAWTC 3 cut(s) 4, 69, 986
PflFI GACNNNGTC 2 cut(s) 923, 1055
PflMI CCANNNNNTGG 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 113
PkrI GCNGC 2 cut(s) 724, 735
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspN4I GGNNCC 1 cut(s) 555
PspPI GGNCC 1 cut(s) 269
PsuI RGATCY 1 cut(s) 250
PsyI GACNNNGTC 2 cut(s) 923, 1055
RseI CAYNNNNRTG 1 cut(s) 562
SaqAI TTAA 3 cut(s) 788, 1062, 1084
SatI GCNGC 2 cut(s) 723, 734
Sau3AI GATC 6 cut(s) 117, 250, 478, 871, 951, 996
Sau96I GGNCC 1 cut(s) 269
ScrFI CCNGG 1 cut(s) 115
SfaNI GCATC 3 cut(s) 175, 400, 904
SfcI CTRYAG 1 cut(s) 43
SmiMI CAYNNNNRTG 1 cut(s) 562
SmlI CTYRAG 4 cut(s) 86, 511, 877, 992
SmoI CTYRAG 4 cut(s) 86, 511, 877, 992
Sse9I AATT 9 cut(s) 133, 204, 442, 643, 660, 705, 806, 844, 1064
SsiI CCGC 3 cut(s) 224, 863, 948
SspMI CTAG 3 cut(s) 195, 719, 932
StyD4I CCNGG 1 cut(s) 113
StyI CCWWGG 2 cut(s) 563, 614
TaaI ACNGT 3 cut(s) 435, 1029, 1055
TaiI ACGT 3 cut(s) 126, 160, 1017
TaqI TCGA 3 cut(s) 573, 700, 954
TasI AATT 9 cut(s) 133, 204, 442, 643, 660, 705, 806, 844, 1064
TfiI GAWTC 3 cut(s) 4, 69, 986
Tru1I TTAA 3 cut(s) 788, 1062, 1084
Tru9I TTAA 3 cut(s) 788, 1062, 1084
TscAI CASTG 2 cut(s) 181, 633
TseI GCWGC 2 cut(s) 722, 733
TspDTI ATGAA 2 cut(s) 897, 1086
TspGWI ACGGA 2 cut(s) 441, 686
TspRI CASTG 2 cut(s) 181, 633
Tth111I GACNNNGTC 2 cut(s) 923, 1055
Van91I CCANNNNNTGG 1 cut(s) 278
XapI RAATTY 5 cut(s) 204, 442, 705, 844, 1064
XmnI GAANNNNTTC 1 cut(s) 587
XspI CTAG 3 cut(s) 195, 719, 932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.