Rmu_sc0001705.1_g000019

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001705.1
OG0011219
Physical Location & Seq
Reverse (-)
52711 .. 55321
2611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001705.1_g000019.1.cds

Sequence Viewer

Length: 1104 bp
atggagagcgcttcagaattggtggcatttccgctgctgacgacgccgatcgaatcgaactacagagcctgcaccatcccttaccgcttcccctccgacaatccccgcaagcccaccccaactgagattgcttggatcgacctcttcctcaactccatcccttccttcaagaagcgagctgagagtgatgcttcagtcaatgatgctcctgctaaagccgcaacgtttgctcagaggtactctgaaatactggaggacttgaagaaggatcctgagagtcacggcggtccgcctgattgcattctactttgcagactccgtgagcaggttcttagggagttggggttcagagatatattcaagaaagtcaaggatgaagagaatgcaaaggccataaccctatttgagaatgtcgtggatcttaacgatgctattgaagatgaaggcaagcgggtagagaatctgattagaggaatatttgcagggaacatatttgatcttggttctgcacagcttgctgaagttttctcaaaggatggtatgtcttttttagctagttgccagaaccttgtccctagaccttgggttattgatgaactggacactttcaagttgaaatggagcaagaatccttggaaaaaggctgttatatttgttgacaattctggtgctgatgttattttgggtatcttaccatttgcaagagagttactccgtcgtggtacacaggttgtgttggcagctaatgacatgccttctatcaacgacgtaacttaccctgaactgattgagattttagcaaagctgaaggacaaccacgggaagctcaagggtgttgatactacaaatcttttcattgccaattccggtaatgatttgccggttattgatcttgcaagcgtgtcacaagagcttgcctacctggccagtgatgcagacctagttgtcttggaagggatgggtcgtgggatagagacaaatctctatgcgcagttcaagtgtgattccctgaagattggaatggtgaaacatccagaggttgcccagtttcttggaggacggctatacgattgtgtcttcaaatacaatgaagttttgagttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

367

Amino Acids

40.85

Weight (kDa)

4.96

Isoelectric Point (pI)

34.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 944
Acc16I TGCGCA 1 cut(s) 990
Acc36I ACCTGC 1 cut(s) 316
AciI CCGC 7 cut(s) 32, 85, 106, 219, 285, 290, 451
AclI AACGTT 1 cut(s) 224
AclWI GGATC 4 cut(s) 143, 263, 276, 426
AcoI YGGCCR 1 cut(s) 924
AcuI CTGAAG 4 cut(s) 177, 540, 827, 1031
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 239, 724
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 325
AgsI TTSAA 8 cut(s) 169, 262, 361, 437, 610, 616, 997, 1081
AjnI CCWGG 1 cut(s) 921
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
AluBI AGCT 7 cut(s) 179, 514, 554, 743, 805, 826, 913
AluI AGCT 7 cut(s) 179, 514, 554, 743, 805, 826, 913
Alw26I GTCTC 1 cut(s) 968
AlwI GGATC 4 cut(s) 143, 263, 276, 426
AlwNI CAGNNNCTG 1 cut(s) 69
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 2 cut(s) 390, 924
ApeKI GCWGC 2 cut(s) 34, 740
AspLEI GCGC 2 cut(s) 11, 991
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 1036
AvaII GGWCC 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 714, 747
BalI TGGCCA 1 cut(s) 926
BamHI GGATCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 1069
BbvI GCAGC 2 cut(s) 21, 752
BccI CCATC 4 cut(s) 83, 164, 530, 952
BceAI ACGGC 2 cut(s) 298, 1076
BciT130I CCWGG 1 cut(s) 923
BcoDI GTCTC 1 cut(s) 968
BfaI CTAG 3 cut(s) 555, 576, 941
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 316
BglI GCCNNNNNGGC 1 cut(s) 923
BisI GCNGC 3 cut(s) 35, 219, 741
BlsI GCNGC 3 cut(s) 36, 220, 742
Bme1390I CCNGG 1 cut(s) 923
Bme18I GGWCC 1 cut(s) 287
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 1 cut(s) 923
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 4 cut(s) 178, 193, 418, 922
BmuI ACTGGG 1 cut(s) 1039
BpiI GAAGAC 1 cut(s) 1069
BplI GAGNNNNNCTC 2 cut(s) 696, 728
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 812
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 581, 632, 817
BsaWI WCCGGW 1 cut(s) 866
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 880
Bse1I ACTGG 4 cut(s) 255, 603, 927, 1045
Bse3DI GCAATG 1 cut(s) 855
BseBI CCWGG 1 cut(s) 923
BseDI CCNNGG 3 cut(s) 581, 632, 817
BseGI GGATG 6 cut(s) 75, 156, 379, 541, 963, 1030
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 855
BseMII CTCAG 4 cut(s) 114, 171, 245, 264
BseNI ACTGG 4 cut(s) 255, 603, 927, 1045
BseXI GCAGC 2 cut(s) 21, 752
BsgI GTGCAG 2 cut(s) 55, 492
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 392, 926
BsiEI CGRYCG 1 cut(s) 51
BsiSI CCGG 2 cut(s) 867, 881
BslFI GGGAC 1 cut(s) 557
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 968
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 2 cut(s) 300, 388
BsnI GGCC 2 cut(s) 392, 926
Bsp143I GATC 6 cut(s) 48, 135, 268, 418, 496, 889
BspACI CCGC 7 cut(s) 32, 85, 106, 219, 285, 290, 451
BspANI GGCC 2 cut(s) 392, 926
BspCNI CTCAG 4 cut(s) 115, 172, 244, 265
BspLI GGNNCC 1 cut(s) 270
BspMI ACCTGC 1 cut(s) 316
BspPI GGATC 4 cut(s) 143, 263, 276, 426
BsrDI GCAATG 1 cut(s) 855
BsrFI RCCGGY 1 cut(s) 880
BsrI ACTGG 4 cut(s) 255, 603, 927, 1045
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 3 cut(s) 581, 632, 817
BssMI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 581, 632
Bst2UI CCWGG 1 cut(s) 923
Bst6I CTCTTC 2 cut(s) 149, 372
BstACI GRCGYC 1 cut(s) 44
BstAPI GCANNNNNTGC 2 cut(s) 227, 515
BstC8I GCNNGC 7 cut(s) 70, 110, 177, 449, 516, 898, 915
BstDEI CTNAG 5 cut(s) 123, 180, 231, 273, 332
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 6 cut(s) 75, 156, 379, 541, 963, 1030
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 991
BstKTI GATC 6 cut(s) 51, 138, 271, 421, 499, 892
BstMAI GTCTC 1 cut(s) 968
BstMBI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 6 cut(s) 43, 218, 227, 515, 923, 932
BstNI CCWGG 1 cut(s) 923
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 1 cut(s) 921
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 21, 752
BstV2I GAAGAC 1 cut(s) 1069
BstX2I RGATCY 2 cut(s) 268, 418
BstXI CCANNNNNNTGG 1 cut(s) 1052
BstYI RGATCY 2 cut(s) 268, 418
BsuRI GGCC 2 cut(s) 392, 926
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 6 cut(s) 75, 156, 379, 541, 963, 1030
BtsIMutI CAGTG 1 cut(s) 934
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 7 cut(s) 70, 110, 177, 449, 516, 898, 915
CaiI CAGNNNCTG 1 cut(s) 69
CfoI GCGC 2 cut(s) 11, 991
Cfr10I RCCGGY 1 cut(s) 880
Cfr13I GGNCC 1 cut(s) 287
CpoI CGGWCCG 1 cut(s) 287
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 238, 723
CspI CGGWCCG 1 cut(s) 287
CviAII CATG 1 cut(s) 751
CviQI GTAC 2 cut(s) 238, 723
DdeI CTNAG 5 cut(s) 123, 180, 231, 273, 332
DpnI GATC 6 cut(s) 50, 137, 270, 420, 498, 891
DpnII GATC 6 cut(s) 48, 135, 268, 418, 496, 889
DrdI GACNNNNNNGTC 1 cut(s) 944
DseDI GACNNNNNNGTC 1 cut(s) 944
EaeI YGGCCR 1 cut(s) 924
Eam1104I CTCTTC 2 cut(s) 149, 372
EarI CTCTTC 2 cut(s) 149, 372
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 581, 632
Eco47I GGWCC 1 cut(s) 287
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 4 cut(s) 177, 540, 827, 1031
EcoRII CCWGG 1 cut(s) 921
EcoT14I CCWWGG 2 cut(s) 581, 632
ErhI CCWWGG 2 cut(s) 581, 632
FaeI CATG 1 cut(s) 754
FaiI YATR 8 cut(s) 356, 395, 491, 542, 650, 752, 987, 1066
FaqI GGGAC 1 cut(s) 557
FatI CATG 1 cut(s) 750
FauI CCCGC 2 cut(s) 113, 444
Fnu4HI GCNGC 3 cut(s) 35, 219, 741
FokI GGATG 6 cut(s) 62, 143, 386, 548, 970, 1017
Fsp4HI GCNGC 3 cut(s) 35, 219, 741
FspBI CTAG 3 cut(s) 555, 576, 941
FspI TGCGCA 1 cut(s) 990
GlaI GCGC 2 cut(s) 10, 990
GluI GCNGC 3 cut(s) 35, 219, 741
GsuI CTGGAG 1 cut(s) 272
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 392, 926
HapII CCGG 2 cut(s) 867, 881
HgaI GACGC 1 cut(s) 52
HhaI GCGC 2 cut(s) 11, 991
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 754
Hin6I GCGC 2 cut(s) 9, 989
HinP1I GCGC 2 cut(s) 9, 989
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 6 cut(s) 53, 277, 315, 460, 628, 1004
HpaII CCGG 2 cut(s) 867, 881
HphI GGTGA 1 cut(s) 1036
Hpy166II GTNNAC 2 cut(s) 658, 725
Hpy188I TCNGA 6 cut(s) 16, 97, 234, 244, 350, 465
Hpy188III TCNNGA 4 cut(s) 169, 272, 361, 1034
Hpy8I GTNNAC 2 cut(s) 658, 725
Hpy99I CGWCG 3 cut(s) 46, 720, 770
HpyAV CCTTC 7 cut(s) 171, 175, 259, 437, 765, 802, 947
HpyCH4IV ACGT 2 cut(s) 224, 768
HpyCH4V TGCA 9 cut(s) 72, 300, 312, 386, 482, 509, 701, 896, 935
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 218, 227, 515, 923, 932
HpyF3I CTNAG 5 cut(s) 123, 180, 231, 273, 332
HpySE526I ACGT 2 cut(s) 224, 768
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 754
HspAI GCGC 2 cut(s) 9, 989
Kzo9I GATC 6 cut(s) 48, 135, 268, 418, 496, 889
LmnI GCTCC 2 cut(s) 211, 621
Lsp1109I GCAGC 2 cut(s) 21, 752
LweI GCATC 4 cut(s) 178, 193, 418, 922
MaeI CTAG 3 cut(s) 555, 576, 941
MaeII ACGT 2 cut(s) 224, 768
MaeIII GTNAC 4 cut(s) 278, 708, 769, 903
MalI GATC 6 cut(s) 50, 137, 270, 420, 498, 891
MboI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
MboII GAAGA 6 cut(s) 136, 274, 389, 449, 1024, 1069
MflI RGATCY 2 cut(s) 268, 418
MlsI TGGCCA 1 cut(s) 926
MluCI AATT 3 cut(s) 17, 661, 862
MluNI TGGCCA 1 cut(s) 926
MlyI GAGTC 2 cut(s) 286, 309
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 8 cut(s) 103, 152, 158, 228, 247, 464, 1030, 1049
Mox20I TGGCCA 1 cut(s) 926
MscI TGGCCA 1 cut(s) 926
MseI TTAA 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 926
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 867, 881
MspR9I CCNGG 1 cut(s) 923
Mva1269I GAATGC 2 cut(s) 300, 388
MvaI CCWGG 1 cut(s) 923
MwoI GCNNNNNNNGC 6 cut(s) 43, 218, 227, 515, 923, 932
NdeII GATC 6 cut(s) 48, 135, 268, 418, 496, 889
NlaIII CATG 1 cut(s) 754
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 278, 903
NsbI TGCGCA 1 cut(s) 990
NspI RCATGY 1 cut(s) 754
PctI GAATGC 2 cut(s) 300, 388
PfeI GAWTC 4 cut(s) 53, 460, 628, 1004
PkrI GCNGC 3 cut(s) 36, 220, 742
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 2 cut(s) 285, 309
PpsI GAGTC 2 cut(s) 285, 309
Psp1406I AACGTT 1 cut(s) 224
Psp6I CCWGG 1 cut(s) 921
PspGI CCWGG 1 cut(s) 921
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 268, 418
PvuI CGATCG 1 cut(s) 51
RsaI GTAC 2 cut(s) 239, 724
RsaNI GTAC 2 cut(s) 238, 723
Rsr2I CGGWCCG 1 cut(s) 287
RsrII CGGWCCG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 3 cut(s) 35, 219, 741
Sau3AI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 2 cut(s) 286, 309
ScrFI CCNGG 1 cut(s) 923
SfaNI GCATC 4 cut(s) 178, 193, 418, 922
SfcI CTRYAG 1 cut(s) 61
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 827
SmoI CTYRAG 1 cut(s) 827
Sse9I AATT 3 cut(s) 17, 661, 862
SsiI CCGC 7 cut(s) 32, 85, 106, 219, 285, 290, 451
SspI AATATT 1 cut(s) 477
SspMI CTAG 3 cut(s) 555, 576, 941
StyD4I CCNGG 1 cut(s) 921
StyI CCWWGG 2 cut(s) 581, 632
TaiI ACGT 2 cut(s) 227, 771
TaqI TCGA 3 cut(s) 51, 56, 138
TasI AATT 3 cut(s) 17, 661, 862
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 4 cut(s) 53, 460, 628, 1004
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 934
TseFI GTSAC 2 cut(s) 278, 903
TseI GCWGC 2 cut(s) 34, 740
Tsp45I GTSAC 2 cut(s) 278, 903
TspDTI ATGAA 5 cut(s) 390, 456, 609, 844, 1104
TspGWI ACGGA 2 cut(s) 308, 704
TspRI CASTG 1 cut(s) 934
VpaK11BI GGWCC 1 cut(s) 287
XceI RCATGY 1 cut(s) 754
XspI CTAG 3 cut(s) 555, 576, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.