Rroxscaffold_7G00187260

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011219
Physical Location & Seq
Forward (+)
26651979 .. 26654801
2823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00187260.1

Sequence Viewer

Length: 975 bp
ATGGAGAGCGCTTCAGAATTGGTGGCATTTCCGCTGCTGACGACGCCGATCGAATCGAACTACAGAGCCTGCACCATCCCTTACCGCTTCCCCTCCGACAATCCCCGCAAGCCTACCCCCACTGAGATTGCTTGGATCGACCTCTTCCTCAACTCCATCCCTTCCTTCAAGAAGCGAGCTGAGAGTGATGCTACAGTCAATGATGCTCCTGCTAAAGCTGAAAAGTTTGCTCAGAGGTACTCTGAAATACTTGAGGACTTGAAGAAGGATCCCGAGAGTCACGGCGGTCCGCCTGATTGCATTCTACTTTGCAGACTTCGTGAGCAGATTCTTAGGGAGTTGGGGTTCAGAGATATATTCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCCATAACCCTGTTTGAGAATGTGGTGGATCTTAACGATGCTATTGAAGATGAAGGCAAGCGGGTAGAGAATCTGATTAGAGGAATATTTGCGGGGAACATATTTGATCTTGGTTCTGCACAGGCTGTTATATTTGTTGACAATTCTGGTGCCGATGTTATTTTGGGTATCTTACCATTTGCAAGAGAGTTACTCCGTCATGGTACACAGGTTGTGTTGGCAGCTAATGACATGCCTTCTATCAACGATGTAACTTACCCTGAACTGATTGAGATTTTAGCAAAGTTGAAGGACAACCACGGGAAGCTCAAGGGTGTTGATACTACAAATCTTTTCATTGCCAATTCCGGTAATGATTTGCCGGTTATTGATCTTGCAAGCGTGTCACAAGAGCTTGCCTACCTGGCCAGTGATGCAGACCTAGTTGTCTTGGAAGGGATGGGTCGTGGGATAGAGACAAATCTCTATGCGCAGTTCAAGTGTGATTCCCTGAAGATTGGAATGGTGAAACATCCAGAGGTTGCCCAGTTTCTTGGAGGACGGCTATACGATTGTGTCTTCAAATACAATGAAGTTTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

324

Amino Acids

35.91

Weight (kDa)

4.81

Isoelectric Point (pI)

35.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 52 - 171 5.7e-21 Damage-control phosphatase ARMT1-like domain
ARMT1-like_dom PF01937 171 - 316 1.6e-29 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 815
Acc16I TGCGCA 1 cut(s) 861
AccB1I GGYRCC 1 cut(s) 539
AciI CCGC 7 cut(s) 32, 85, 106, 285, 290, 451, 482
AclWI GGATC 4 cut(s) 143, 263, 276, 426
AcoI YGGCCR 1 cut(s) 795
AcuI CTGAAG 1 cut(s) 902
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 239, 595
AfeI AGCGCT 1 cut(s) 10
AgsI TTSAA 7 cut(s) 169, 262, 361, 437, 679, 868, 952
AjnI CCWGG 1 cut(s) 792
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
AluBI AGCT 5 cut(s) 179, 218, 614, 697, 784
AluI AGCT 5 cut(s) 179, 218, 614, 697, 784
Alw26I GTCTC 1 cut(s) 839
AlwI GGATC 4 cut(s) 143, 263, 276, 426
AlwNI CAGNNNCTG 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 272
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 2 cut(s) 390, 795
ApeKI GCWGC 2 cut(s) 34, 611
AspLEI GCGC 2 cut(s) 11, 862
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 1 cut(s) 907
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 585, 618
BalI TGGCCA 1 cut(s) 797
BamHI GGATCC 1 cut(s) 268
BanI GGYRCC 1 cut(s) 539
BbsI GAAGAC 1 cut(s) 940
BbvI GCAGC 2 cut(s) 21, 623
BccI CCATC 3 cut(s) 83, 164, 823
BceAI ACGGC 2 cut(s) 298, 947
BciT130I CCWGG 1 cut(s) 794
BcoDI GTCTC 1 cut(s) 839
BfaI CTAG 1 cut(s) 812
BfmI CTRYAG 2 cut(s) 61, 192
BfoI RGCGCY 1 cut(s) 12
BglI GCCNNNNNGGC 1 cut(s) 794
BisI GCNGC 2 cut(s) 35, 612
BlsI GCNGC 2 cut(s) 36, 613
Bme1390I CCNGG 1 cut(s) 794
Bme18I GGWCC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 270, 541
BmrFI CCNGG 1 cut(s) 794
BmrI ACTGGG 1 cut(s) 910
BmsI GCATC 4 cut(s) 178, 193, 418, 793
BmuI ACTGGG 1 cut(s) 910
BpiI GAAGAC 1 cut(s) 940
BplI GAGNNNNNCTC 2 cut(s) 567, 599
BpuEI CTTGAG 2 cut(s) 272, 683
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 688
BsaWI WCCGGW 1 cut(s) 737
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bse118I RCCGGY 1 cut(s) 751
Bse1I ACTGG 2 cut(s) 798, 916
Bse3DI GCAATG 1 cut(s) 726
BseBI CCWGG 1 cut(s) 794
BseDI CCNNGG 1 cut(s) 688
BseGI GGATG 5 cut(s) 75, 156, 379, 834, 901
BseMI GCAATG 1 cut(s) 726
BseMII CTCAG 3 cut(s) 114, 171, 245
BseNI ACTGG 2 cut(s) 798, 916
BseXI GCAGC 2 cut(s) 21, 623
BsgI GTGCAG 2 cut(s) 55, 492
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 392, 797
BshNI GGYRCC 1 cut(s) 539
BsiEI CGRYCG 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 738, 752
BsmAI GTCTC 1 cut(s) 839
BsmI GAATGC 2 cut(s) 300, 388
BsnI GGCC 2 cut(s) 392, 797
BsoBI CYCGRG 1 cut(s) 272
Bsp143I GATC 6 cut(s) 48, 135, 268, 418, 496, 760
BspACI CCGC 7 cut(s) 32, 85, 106, 285, 290, 451, 482
BspANI GGCC 2 cut(s) 392, 797
BspCNI CTCAG 3 cut(s) 115, 172, 244
BspLI GGNNCC 2 cut(s) 270, 541
BspPI GGATC 4 cut(s) 143, 263, 276, 426
BspT107I GGYRCC 1 cut(s) 539
BsrDI GCAATG 1 cut(s) 726
BsrFI RCCGGY 1 cut(s) 751
BsrI ACTGG 2 cut(s) 798, 916
BssAI RCCGGY 1 cut(s) 751
BssECI CCNNGG 1 cut(s) 688
BssMI GATC 6 cut(s) 48, 135, 268, 418, 496, 760
BssNI GRCGYC 1 cut(s) 44
Bst2UI CCWGG 1 cut(s) 794
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 2 cut(s) 149, 372
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 6 cut(s) 70, 110, 177, 449, 769, 786
BstDEI CTNAG 4 cut(s) 123, 180, 231, 332
BstDSI CCRYGG 1 cut(s) 688
BstF5I GGATG 5 cut(s) 75, 156, 379, 834, 901
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 2 cut(s) 11, 862
BstKTI GATC 6 cut(s) 51, 138, 271, 421, 499, 763
BstMAI GTCTC 1 cut(s) 839
BstMBI GATC 6 cut(s) 48, 135, 268, 418, 496, 760
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 43, 794, 803
BstNI CCWGG 1 cut(s) 794
BstNSI RCATGY 1 cut(s) 625
BstSCI CCNGG 1 cut(s) 792
BstSFI CTRYAG 2 cut(s) 61, 192
BstV1I GCAGC 2 cut(s) 21, 623
BstV2I GAAGAC 1 cut(s) 940
BstX2I RGATCY 2 cut(s) 268, 418
BstXI CCANNNNNNTGG 1 cut(s) 923
BstYI RGATCY 2 cut(s) 268, 418
BsuRI GGCC 2 cut(s) 392, 797
BtgI CCRYGG 1 cut(s) 688
BtsCI GGATG 5 cut(s) 75, 156, 379, 834, 901
BtsIMutI CAGTG 2 cut(s) 120, 805
Cac8I GCNNGC 6 cut(s) 70, 110, 177, 449, 769, 786
CaiI CAGNNNCTG 1 cut(s) 69
CfoI GCGC 2 cut(s) 11, 862
Cfr10I RCCGGY 1 cut(s) 751
Cfr13I GGNCC 1 cut(s) 287
CpoI CGGWCCG 1 cut(s) 287
CseI GACGC 1 cut(s) 52
Csp6I GTAC 2 cut(s) 238, 594
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CspI CGGWCCG 1 cut(s) 287
CviAII CATG 2 cut(s) 590, 622
CviQI GTAC 2 cut(s) 238, 594
DdeI CTNAG 4 cut(s) 123, 180, 231, 332
DpnI GATC 6 cut(s) 50, 137, 270, 420, 498, 762
DpnII GATC 6 cut(s) 48, 135, 268, 418, 496, 760
DrdI GACNNNNNNGTC 1 cut(s) 815
DseDI GACNNNNNNGTC 1 cut(s) 815
EaeI YGGCCR 1 cut(s) 795
Eam1104I CTCTTC 2 cut(s) 149, 372
EarI CTCTTC 2 cut(s) 149, 372
EciI GGCGGA 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 287
Eco47III AGCGCT 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 902
Eco88I CYCGRG 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 792
FaeI CATG 2 cut(s) 593, 625
FaiI YATR 8 cut(s) 356, 395, 491, 521, 591, 623, 858, 937
FatI CATG 2 cut(s) 589, 621
FauI CCCGC 3 cut(s) 113, 444, 475
Fnu4HI GCNGC 2 cut(s) 35, 612
FokI GGATG 5 cut(s) 62, 143, 386, 841, 888
Fsp4HI GCNGC 2 cut(s) 35, 612
FspBI CTAG 1 cut(s) 812
FspI TGCGCA 1 cut(s) 861
GlaI GCGC 2 cut(s) 10, 861
GluI GCNGC 2 cut(s) 35, 612
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 392, 797
HapII CCGG 2 cut(s) 738, 752
HgaI GACGC 1 cut(s) 52
HhaI GCGC 2 cut(s) 11, 862
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 2 cut(s) 593, 625
Hin6I GCGC 2 cut(s) 9, 860
HinP1I GCGC 2 cut(s) 9, 860
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HinfI GANTC 5 cut(s) 53, 277, 328, 460, 875
HpaII CCGG 2 cut(s) 738, 752
HphI GGTGA 1 cut(s) 907
Hpy166II GTNNAC 2 cut(s) 529, 596
Hpy188I TCNGA 6 cut(s) 16, 97, 234, 244, 350, 465
Hpy188III TCNNGA 5 cut(s) 169, 272, 320, 361, 905
Hpy8I GTNNAC 2 cut(s) 529, 596
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 7 cut(s) 171, 175, 259, 437, 636, 673, 818
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4V TGCA 8 cut(s) 72, 300, 312, 386, 509, 572, 767, 806
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 794, 803
HpyF3I CTNAG 4 cut(s) 123, 180, 231, 332
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 593, 625
HspAI GCGC 2 cut(s) 9, 860
Kzo9I GATC 6 cut(s) 48, 135, 268, 418, 496, 760
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 2 cut(s) 21, 623
LweI GCATC 4 cut(s) 178, 193, 418, 793
MaeI CTAG 1 cut(s) 812
MaeIII GTNAC 4 cut(s) 278, 579, 640, 774
MalI GATC 6 cut(s) 50, 137, 270, 420, 498, 762
MboI GATC 6 cut(s) 48, 135, 268, 418, 496, 760
MboII GAAGA 6 cut(s) 136, 274, 389, 449, 895, 940
MflI RGATCY 2 cut(s) 268, 418
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 3 cut(s) 17, 532, 733
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 8 cut(s) 103, 152, 158, 228, 247, 464, 901, 920
Mox20I TGGCCA 1 cut(s) 797
MscI TGGCCA 1 cut(s) 797
MseI TTAA 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 797
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 738, 752
MspR9I CCNGG 1 cut(s) 794
Mva1269I GAATGC 2 cut(s) 300, 388
MvaI CCWGG 1 cut(s) 794
MwoI GCNNNNNNNGC 3 cut(s) 43, 794, 803
NdeII GATC 6 cut(s) 48, 135, 268, 418, 496, 760
NlaIII CATG 2 cut(s) 593, 625
NlaIV GGNNCC 2 cut(s) 270, 541
NmuCI GTSAC 2 cut(s) 278, 774
NsbI TGCGCA 1 cut(s) 861
NspI RCATGY 1 cut(s) 625
PctI GAATGC 2 cut(s) 300, 388
PfeI GAWTC 4 cut(s) 53, 328, 460, 875
PkrI GCNGC 2 cut(s) 36, 613
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 792
PspGI CCWGG 1 cut(s) 792
PspN4I GGNNCC 2 cut(s) 270, 541
PspPI GGNCC 1 cut(s) 287
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 268, 418
PvuI CGATCG 1 cut(s) 51
RsaI GTAC 2 cut(s) 239, 595
RsaNI GTAC 2 cut(s) 238, 594
Rsr2I CGGWCCG 1 cut(s) 287
RsrII CGGWCCG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 35, 612
Sau3AI GATC 6 cut(s) 48, 135, 268, 418, 496, 760
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 794
SfaNI GCATC 4 cut(s) 178, 193, 418, 793
SfcI CTRYAG 2 cut(s) 61, 192
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 2 cut(s) 251, 698
SmoI CTYRAG 2 cut(s) 251, 698
Sse9I AATT 3 cut(s) 17, 532, 733
SsiI CCGC 7 cut(s) 32, 85, 106, 285, 290, 451, 482
SspI AATATT 1 cut(s) 477
SspMI CTAG 1 cut(s) 812
StyD4I CCNGG 1 cut(s) 792
TaaI ACNGT 1 cut(s) 196
TaqI TCGA 3 cut(s) 51, 56, 138
TasI AATT 3 cut(s) 17, 532, 733
TfiI GAWTC 4 cut(s) 53, 328, 460, 875
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 2 cut(s) 127, 805
TseFI GTSAC 2 cut(s) 278, 774
TseI GCWGC 2 cut(s) 34, 611
Tsp45I GTSAC 2 cut(s) 278, 774
TspDTI ATGAA 4 cut(s) 390, 456, 715, 975
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 2 cut(s) 127, 805
VpaK11BI GGWCC 1 cut(s) 287
XceI RCATGY 1 cut(s) 625
XspI CTAG 1 cut(s) 812
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.