Rorug06G0139200

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011219
Physical Location & Seq
Forward (+)
19720286 .. 19723009
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0139200.1

Sequence Viewer

Length: 975 bp
ATGCTAAAGCTCAAATTTTCTCTCTCTTGTTCTTGTTCTTGGCTATTTCGGAGAGAGACAAAGGGAAGGAGCAAAAAATTTCCAATTCCAGTCGGATTCTCAAGCCAGCCTTCTCAGAACATCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTGGAGAGGAGGAGAACGGTCACTCCTCGACCTAATTCTTTAGATTTGAGGACCGGGAATGGAGCTGCCGGCGGCGGTGAAATGTCGGCGGCTCAGAAGCTGTTGGTCACTTCGATGAGGAGTTTATCGGTTTCGTTTCAGGGCGAGTCGTACGCGCTCCAGGTGAGTAAAGCGAAGCGACCGCCGTCTCCGATTGCGAGGAAAGGGACGCCGGAGCGAAGGAAGGCTTCGACGCAGGCGAGGCCGGATCAGAGCGAGAATTCCAGACTGATGGAGCAGTACCGGTGGCCGCCGAGGTTGAGGCCGGACACTTGTATGACCAGGAGCTTGGATTTTACGGTGGAGATGAAGAAATTGAATGGATCTGGCTCCAATGTGATGATATATTTGGAAGAGTGTTGGCTTATGGACCGGGATTACTCTAATTCCTTGTCTGGTGCCATCGAAGCTTTGAGGGCTAGCACGCTCCGCCTTCTAGTGGTTGATGGAGCAAGGGCAGATGTCCACAATGTGAAGGATGCTATTTCTTCCGCAGTTGATGTGATGCAGGCAATGGCATCATCAATATGCTTATTATTATCGAAGGTGGTTTTTCTCAAACTTTATGGTACTGGCCAAGTCAATTGCCAAGTCGCTGTCAATTACATGTCATTGGATAGGTCACGTTGCATGTTACTGATCAAGTCACTGCCTATGTCACTAGCCAACGACGTCACTGGCCAGCCCAGGTCCCTAGTTAGTGATGCCAATGGCCAAGTCACCGTTACCCTCAGGTCACTGGCCATATTACAATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

324

Amino Acids

35.85

Weight (kDa)

10.14

Isoelectric Point (pI)

57.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QWRF PF04484 186 - 255 3.7e-24 QWRF family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 891
AccB1I GGYRCC 1 cut(s) 614
AccII CGCG 1 cut(s) 332
AciI CCGC 7 cut(s) 249, 252, 266, 359, 467, 646, 708
AclWI GGATC 2 cut(s) 432, 547
AcoI YGGCCR 5 cut(s) 464, 790, 895, 928, 957
AcsI RAATTY 3 cut(s) 14, 77, 436
AcyI GRCGYC 2 cut(s) 386, 888
AdeI CACNNNGTG 1 cut(s) 688
AfaI GTAC 3 cut(s) 329, 458, 787
AfiI CCNNNNNNNGG 1 cut(s) 655
AflIII ACRYGT 1 cut(s) 822
AgeI ACCGGT 1 cut(s) 459
AgsI TTSAA 2 cut(s) 140, 535
AjnI CCWGG 3 cut(s) 336, 497, 902
AloI GAACNNNNNNTCC 2 cut(s) 184, 216
AluBI AGCT 5 cut(s) 10, 242, 277, 504, 626
AluI AGCT 5 cut(s) 10, 242, 277, 504, 626
Alw26I GTCTC 2 cut(s) 50, 369
AlwI GGATC 2 cut(s) 432, 547
AlwNI CAGNNNCTG 1 cut(s) 277
AoxI GGCC 7 cut(s) 419, 464, 479, 790, 895, 928, 957
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 3 cut(s) 14, 77, 436
AsiGI ACCGGT 1 cut(s) 459
Asp700I GAANNNNTTC 1 cut(s) 144
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 3 cut(s) 228, 586, 906
AsuC2I CCSGG 2 cut(s) 232, 590
AsuHPI GGTGA 3 cut(s) 266, 352, 928
AsuNHI GCTAGC 1 cut(s) 635
AvaII GGWCC 3 cut(s) 228, 586, 906
AxyI CCTNAGG 1 cut(s) 947
BalI TGGCCA 4 cut(s) 792, 897, 930, 959
BanI GGYRCC 1 cut(s) 614
BbvI GCAGC 1 cut(s) 229
BccI CCATC 3 cut(s) 442, 626, 656
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 3 cut(s) 338, 499, 904
BclI TGATCA 1 cut(s) 855
BcnI CCSGG 2 cut(s) 232, 590
BcoDI GTCTC 2 cut(s) 50, 369
BfaI CTAG 4 cut(s) 636, 653, 878, 911
BisI GCNGC 4 cut(s) 243, 250, 267, 467
BlsI GCNGC 4 cut(s) 244, 251, 268, 468
Bme1390I CCNGG 5 cut(s) 232, 338, 499, 590, 904
Bme18I GGWCC 3 cut(s) 228, 586, 906
BmgT120I GGNCC 3 cut(s) 228, 586, 906
BmiI GGNNCC 4 cut(s) 147, 547, 616, 908
BmrFI CCNGG 5 cut(s) 232, 338, 499, 590, 904
BmsI GCATC 4 cut(s) 685, 711, 743, 910
BmtI GCTAGC 1 cut(s) 639
BoxI GACNNNNGTC 1 cut(s) 361
BpmI CTGGAG 1 cut(s) 320
BpuEI CTTGAG 1 cut(s) 85
BpuMI CCSGG 2 cut(s) 232, 590
BsaHI GRCGYC 2 cut(s) 386, 888
BsaJI CCNNGG 2 cut(s) 470, 902
BsaWI WCCGGW 1 cut(s) 459
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse118I RCCGGY 2 cut(s) 245, 459
Bse1I ACTGG 4 cut(s) 89, 793, 898, 960
Bse21I CCTNAGG 1 cut(s) 947
Bse3DI GCAATG 1 cut(s) 735
BseBI CCWGG 3 cut(s) 338, 499, 904
BseDI CCNNGG 2 cut(s) 470, 902
BseGI GGATG 1 cut(s) 700
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMI GCAATG 1 cut(s) 735
BseMII CTCAG 3 cut(s) 128, 284, 961
BseNI ACTGG 4 cut(s) 89, 793, 898, 960
BseRI GAGGAG 4 cut(s) 192, 199, 202, 310
BseXI GCAGC 1 cut(s) 229
Bsh1236I CGCG 1 cut(s) 332
Bsh1285I CGRYCG 1 cut(s) 359
BshFI GGCC 7 cut(s) 421, 466, 481, 792, 897, 930, 959
BshNI GGYRCC 1 cut(s) 614
BshTI ACCGGT 1 cut(s) 459
BsiEI CGRYCG 1 cut(s) 359
BsiSI CCGG 7 cut(s) 231, 246, 389, 422, 460, 482, 589
BsiWI CGTACG 1 cut(s) 327
BslFI GGGAC 2 cut(s) 397, 892
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 2 cut(s) 50, 369
BsmBI CGTCTC 1 cut(s) 369
BsmFI GGGAC 2 cut(s) 397, 892
BsnI GGCC 7 cut(s) 421, 466, 481, 792, 897, 930, 959
Bsp143I GATC 3 cut(s) 424, 539, 855
BspACI CCGC 7 cut(s) 249, 252, 266, 359, 467, 646, 708
BspANI GGCC 7 cut(s) 421, 466, 481, 792, 897, 930, 959
BspCNI CTCAG 3 cut(s) 127, 283, 960
BspFNI CGCG 1 cut(s) 332
BspHI TCATGA 1 cut(s) 971
BspLI GGNNCC 4 cut(s) 147, 547, 616, 908
BspOI GCTAGC 1 cut(s) 639
BspPI GGATC 2 cut(s) 432, 547
BspT107I GGYRCC 1 cut(s) 614
BsrDI GCAATG 1 cut(s) 735
BsrFI RCCGGY 2 cut(s) 245, 459
BsrI ACTGG 4 cut(s) 89, 793, 898, 960
BssAI RCCGGY 2 cut(s) 245, 459
BssECI CCNNGG 2 cut(s) 470, 902
BssMI GATC 3 cut(s) 424, 539, 855
BssNI GRCGYC 2 cut(s) 386, 888
Bst2UI CCWGG 3 cut(s) 338, 499, 904
Bst4CI ACNGT 3 cut(s) 196, 517, 940
Bst6I CTCTTC 2 cut(s) 135, 564
BstACI GRCGYC 2 cut(s) 386, 888
BstC8I GCNNGC 7 cut(s) 107, 247, 414, 637, 641, 726, 899
BstDEI CTNAG 3 cut(s) 114, 270, 947
BstF5I GGATG 1 cut(s) 700
BstFNI CGCG 1 cut(s) 332
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 3 cut(s) 427, 542, 858
BstMAI GTCTC 2 cut(s) 50, 369
BstMBI GATC 3 cut(s) 424, 539, 855
BstMCI CGRYCG 1 cut(s) 359
BstMWI GCNNNNNNNGC 4 cut(s) 418, 623, 632, 645
BstNI CCWGG 3 cut(s) 338, 499, 904
BstNSI RCATGY 2 cut(s) 826, 850
BstPAI GACNNNNGTC 1 cut(s) 361
BstSCI CCNGG 5 cut(s) 230, 336, 497, 588, 902
BstUI CGCG 1 cut(s) 332
BstV1I GCAGC 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 539
BstXI CCANNNNNNTGG 2 cut(s) 448, 505
BstYI RGATCY 1 cut(s) 539
Bsu36I CCTNAGG 1 cut(s) 947
BsuRI GGCC 7 cut(s) 421, 466, 481, 792, 897, 930, 959
BtsCI GGATG 1 cut(s) 700
BtsI GCAGTG 1 cut(s) 863
BtsIMutI CAGTG 3 cut(s) 863, 891, 953
Cac8I GCNNGC 7 cut(s) 107, 247, 414, 637, 641, 726, 899
CaiI CAGNNNCTG 1 cut(s) 277
CciI TCATGA 1 cut(s) 971
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 2 cut(s) 245, 459
Cfr13I GGNCC 3 cut(s) 228, 586, 906
CseI GACGC 2 cut(s) 394, 418
Csp6I GTAC 3 cut(s) 328, 457, 786
CspAI ACCGGT 1 cut(s) 459
CviAII CATG 3 cut(s) 823, 847, 972
CviQI GTAC 3 cut(s) 328, 457, 786
DdeI CTNAG 3 cut(s) 114, 270, 947
DpnI GATC 3 cut(s) 426, 541, 857
DpnII GATC 3 cut(s) 424, 539, 855
DraIII CACNNNGTG 1 cut(s) 688
EaeI YGGCCR 5 cut(s) 464, 790, 895, 928, 957
Eam1104I CTCTTC 2 cut(s) 135, 564
EarI CTCTTC 2 cut(s) 135, 564
EciI GGCGGA 1 cut(s) 635
Eco47I GGWCC 3 cut(s) 228, 586, 906
Eco81I CCTNAGG 1 cut(s) 947
EcoO109I RGGNCCY 1 cut(s) 906
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 3 cut(s) 336, 497, 902
Esp3I CGTCTC 1 cut(s) 369
FaeI CATG 3 cut(s) 826, 850, 975
FalI AAGNNNNNCTT 4 cut(s) 94, 126, 388, 420
FaqI GGGAC 2 cut(s) 397, 892
FatI CATG 3 cut(s) 822, 846, 971
FbaI TGATCA 1 cut(s) 855
Fnu4HI GCNGC 4 cut(s) 243, 250, 267, 467
FokI GGATG 1 cut(s) 707
Fsp4HI GCNGC 4 cut(s) 243, 250, 267, 467
FspBI CTAG 4 cut(s) 636, 653, 878, 911
GlaI GCGC 1 cut(s) 333
GluI GCNGC 4 cut(s) 243, 250, 267, 467
GsuI CTGGAG 1 cut(s) 320
HaeIII GGCC 7 cut(s) 421, 466, 481, 792, 897, 930, 959
HapII CCGG 7 cut(s) 231, 246, 389, 422, 460, 482, 589
HgaI GACGC 2 cut(s) 394, 418
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 2 cut(s) 386, 888
Hin1II CATG 3 cut(s) 826, 850, 975
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HindIII AAGCTT 1 cut(s) 624
HinfI GANTC 2 cut(s) 96, 323
HpaII CCGG 7 cut(s) 231, 246, 389, 422, 460, 482, 589
HphI GGTGA 3 cut(s) 266, 352, 928
Hpy166II GTNNAC 1 cut(s) 682
Hpy188I TCNGA 6 cut(s) 51, 95, 117, 273, 369, 429
Hpy188III TCNNGA 2 cut(s) 441, 972
Hpy8I GTNNAC 1 cut(s) 682
Hpy99I CGWCG 2 cut(s) 412, 890
HpyAV CCTTC 8 cut(s) 60, 120, 169, 390, 394, 659, 685, 754
HpyCH4III ACNGT 3 cut(s) 196, 517, 940
HpyCH4IV ACGT 2 cut(s) 841, 888
HpyCH4V TGCA 3 cut(s) 157, 724, 846
HpyF10VI GCNNNNNNNGC 4 cut(s) 418, 623, 632, 645
HpyF3I CTNAG 3 cut(s) 114, 270, 947
HpySE526I ACGT 2 cut(s) 841, 888
Hsp92I GRCGYC 2 cut(s) 386, 888
Hsp92II CATG 3 cut(s) 826, 850, 975
HspAI GCGC 1 cut(s) 332
KroI GCCGGC 1 cut(s) 245
KroNI GCCGGC 1 cut(s) 247
Ksp22I TGATCA 1 cut(s) 855
Kzo9I GATC 3 cut(s) 424, 539, 855
LmnI GCTCC 9 cut(s) 69, 239, 339, 391, 451, 501, 551, 648, 665
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 4 cut(s) 685, 711, 743, 910
MaeI CTAG 4 cut(s) 636, 653, 878, 911
MaeII ACGT 2 cut(s) 841, 888
MalI GATC 3 cut(s) 426, 541, 857
MboI GATC 3 cut(s) 424, 539, 855
MboII GAAGA 4 cut(s) 152, 538, 581, 696
MfeI CAATTG 1 cut(s) 799
MflI RGATCY 1 cut(s) 539
MlsI TGGCCA 4 cut(s) 792, 897, 930, 959
MluCI AATT 9 cut(s) 14, 77, 84, 211, 436, 530, 601, 799, 817
MluNI TGGCCA 4 cut(s) 792, 897, 930, 959
MlyI GAGTC 1 cut(s) 332
MmeI TCCRAC 1 cut(s) 73
Mox20I TGGCCA 4 cut(s) 792, 897, 930, 959
MroNI GCCGGC 1 cut(s) 245
MroXI GAANNNNTTC 1 cut(s) 144
MscI TGGCCA 4 cut(s) 792, 897, 930, 959
MslI CAYNNNNRTG 3 cut(s) 290, 491, 742
Msp20I TGGCCA 4 cut(s) 792, 897, 930, 959
MspI CCGG 7 cut(s) 231, 246, 389, 422, 460, 482, 589
MspR9I CCNGG 5 cut(s) 232, 338, 499, 590, 904
MunI CAATTG 1 cut(s) 799
MvaI CCWGG 3 cut(s) 338, 499, 904
MvnI CGCG 1 cut(s) 332
MwoI GCNNNNNNNGC 4 cut(s) 418, 623, 632, 645
NaeI GCCGGC 1 cut(s) 247
NciI CCSGG 2 cut(s) 232, 590
NdeII GATC 3 cut(s) 424, 539, 855
NgoMIV GCCGGC 1 cut(s) 245
NheI GCTAGC 1 cut(s) 635
NlaIII CATG 3 cut(s) 826, 850, 975
NlaIV GGNNCC 4 cut(s) 147, 547, 616, 908
NmeAIII GCCGAG 1 cut(s) 495
NmuCI GTSAC 8 cut(s) 196, 283, 837, 861, 873, 889, 934, 951
NspI RCATGY 2 cut(s) 826, 850
PagI TCATGA 1 cut(s) 971
PciI ACATGT 1 cut(s) 822
PcsI WCGNNNNNNNCGW 1 cut(s) 413
PdiI GCCGGC 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 96
Pfl23II CGTACG 1 cut(s) 327
PinAI ACCGGT 1 cut(s) 459
PkrI GCNGC 4 cut(s) 244, 251, 268, 468
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
PpuMI RGGWCCY 1 cut(s) 906
PscI ACATGT 1 cut(s) 822
PshAI GACNNNNGTC 1 cut(s) 361
Psp5II RGGWCCY 1 cut(s) 906
Psp6I CCWGG 3 cut(s) 336, 497, 902
PspGI CCWGG 3 cut(s) 336, 497, 902
PspLI CGTACG 1 cut(s) 327
PspN4I GGNNCC 4 cut(s) 147, 547, 616, 908
PspPI GGNCC 3 cut(s) 228, 586, 906
PspPPI RGGWCCY 1 cut(s) 906
PstNI CAGNNNCTG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 539
RsaI GTAC 3 cut(s) 329, 458, 787
RsaNI GTAC 3 cut(s) 328, 457, 786
RseI CAYNNNNRTG 3 cut(s) 290, 491, 742
SatI GCNGC 4 cut(s) 243, 250, 267, 467
Sau3AI GATC 3 cut(s) 424, 539, 855
Sau96I GGNCC 3 cut(s) 228, 586, 906
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 5 cut(s) 232, 338, 499, 590, 904
SfaNI GCATC 4 cut(s) 685, 711, 743, 910
SinI GGWCC 3 cut(s) 228, 586, 906
SmiMI CAYNNNNRTG 3 cut(s) 290, 491, 742
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 9 cut(s) 14, 77, 84, 211, 436, 530, 601, 799, 817
SsiI CCGC 7 cut(s) 249, 252, 266, 359, 467, 646, 708
SspMI CTAG 4 cut(s) 636, 653, 878, 911
StyD4I CCNGG 5 cut(s) 230, 336, 497, 588, 902
TaaI ACNGT 3 cut(s) 196, 517, 940
TaiI ACGT 2 cut(s) 844, 891
TaqI TCGA 6 cut(s) 130, 205, 290, 407, 621, 758
TasI AATT 9 cut(s) 14, 77, 84, 211, 436, 530, 601, 799, 817
TauI GCSGC 3 cut(s) 252, 269, 469
TfiI GAWTC 1 cut(s) 96
TscAI CASTG 3 cut(s) 870, 898, 960
TseFI GTSAC 8 cut(s) 196, 283, 837, 861, 873, 889, 934, 951
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 8 cut(s) 196, 283, 837, 861, 873, 889, 934, 951
TspDTI ATGAA 1 cut(s) 539
TspRI CASTG 3 cut(s) 870, 898, 960
VpaK11BI GGWCC 3 cut(s) 228, 586, 906
XapI RAATTY 3 cut(s) 14, 77, 436
XceI RCATGY 2 cut(s) 826, 850
XmnI GAANNNNTTC 1 cut(s) 144
XspI CTAG 4 cut(s) 636, 653, 878, 911
ZraI GACGTC 1 cut(s) 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.