AT4G35360

BEST Arabidopsis thaliana protein match is Uncharacterised conserved protein (UCP030210) (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0011219
Physical Location & Seq
Reverse (-)
16812076 .. 16814926
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G35360.2

Sequence Viewer

Length: 1104 bp
ATGGAGAGCGACTCCGAGATGGTAGCGTTGCCTCTGTTACCGACTCCGATAGAATCGAACTACAGGGCTTGCACCATTCCTTATCGATTCCCTTCTGATAATCCTAGAAAGGCTACTCCCACTGAGATCTCCTGGATCGATCTCTTCTCCAATTCCATCCCTTCTTTCAAGGAACGTGCAGAGAGCGATACAACCGTTCCAGATGCTCCTGTTCGAGCTGAAAAGTTTGCCAAAAGGTATGCGGAGATTCTTGAGGACCTGAAGAAAGATCCGGAGAGCCATGGTGGTCCACCGGATTGCATTCTTCTCTGCAGAATTCGTGAGCTGATACTAAGAGAATTGGGATTTAGGGACATATTTAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCAATATCACTATTTCCTGAAGTTGTCCGTTTGAGTGATGCTATTAACGATGAAGGCAAGCGCATAGAGAATCTGGTCAGAGGGATATTTGCTGGAAACATCTTTGATCTGGGTTCTGCACAGCTTGCTGAGGTTTTCTCAAAAGACGGCATGTCCTTTTTGGCTAGCTGTCAGAACTTGGTTTCACGACCATGGGTCATTGATGACTTGGATAACTTTCAAGCTAGATGGCTCAAGAAGCCTTGGAAGAAGGCTGTGATATTTGTCGATAATTCTGGTGCAGACATAATTTTGGGTATCTTGCCCTTTGCTAGAGAAATGCTACGTCTAGGAATGCAGGTTGTACTGGCTGCTAATGAGCTTCCGTCTATCAACGATGTAACTTATATCGAGCTTGCAGAGATCTTGTCTAAGCTGAATGATGAAAATGGACAATTGATGGGTGTTGATACCTCAAATCTTCTTATTGCAAATTCAGGGAATGACTTACCGGTTATTGATCTTGCAAGAGTATCACAGGAGGTTGCGTACCTCTCAAGCGATGCAGACTTGGTCATCTTAGAAGGCATGGGCCGTGGAATAGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCCCTCAAGATCGGAATGGTGAAGCATCCAGAAGTAGCACAGTTTCTCGGAGGACGGCTTTATGACTGTGTCATCAAATACAATGAAGTTCAGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

367

Amino Acids

41.0

Weight (kDa)

4.79

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 50 - 359 3.3e-66 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 718
AccIII TCCGGA 1 cut(s) 271
AciI CCGC 1 cut(s) 242
AclWI GGATC 2 cut(s) 143, 263
AcsI RAATTY 2 cut(s) 315, 862
AcuI CTGAAG 2 cut(s) 281, 429
AfaI GTAC 2 cut(s) 735, 920
AgeI ACCGGT 1 cut(s) 880
AgsI TTSAA 3 cut(s) 169, 611, 997
AhdI GACNNNNNGTC 2 cut(s) 541, 584
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 8 cut(s) 218, 325, 514, 558, 614, 751, 784, 805
AluI AGCT 8 cut(s) 218, 325, 514, 558, 614, 751, 784, 805
Alw26I GTCTC 1 cut(s) 968
AlwI GGATC 2 cut(s) 143, 263
Aor13HI TCCGGA 1 cut(s) 271
AoxI GGCC 1 cut(s) 961
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 2 cut(s) 315, 862
AsiGI ACCGGT 1 cut(s) 880
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 3 cut(s) 256, 287, 961
AsuHPI GGTGA 1 cut(s) 1036
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 2 cut(s) 256, 287
BaeI ACNNNNGTAYC 2 cut(s) 180, 213
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 727
BccI CCATC 4 cut(s) 13, 164, 612, 823
BceAI ACGGC 3 cut(s) 553, 948, 1076
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 1 cut(s) 968
BfaI CTAG 5 cut(s) 105, 555, 615, 702, 719
BfmI CTRYAG 2 cut(s) 61, 310
BfuAI ACCTGC 1 cut(s) 718
BglII AGATCT 2 cut(s) 126, 792
BisI GCNGC 1 cut(s) 741
BlsI GCNGC 1 cut(s) 742
Bme1390I CCNGG 1 cut(s) 133
Bme18I GGWCC 2 cut(s) 256, 287
BmeRI GACNNNNNGTC 2 cut(s) 541, 584
BmgT120I GGNCC 3 cut(s) 256, 287, 961
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 4 cut(s) 193, 418, 922, 1039
BmtI GCTAGC 1 cut(s) 558
BplI GAGNNNNNCTC 3 cut(s) 28, 512, 544
Bpu10I CCTNAGC 1 cut(s) 519
BpuEI CTTGAG 4 cut(s) 272, 608, 910, 995
Bsa29I ATCGAT 2 cut(s) 85, 138
BsaJI CCNNGG 4 cut(s) 280, 581, 632, 964
BsaWI WCCGGW 3 cut(s) 271, 292, 880
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bse118I RCCGGY 1 cut(s) 880
Bse1I ACTGG 1 cut(s) 741
BseAI TCCGGA 1 cut(s) 271
BseBI CCWGG 1 cut(s) 133
BseCI ATCGAT 2 cut(s) 85, 138
BseDI CCNNGG 4 cut(s) 280, 581, 632, 964
BseGI GGATG 3 cut(s) 156, 379, 1030
BseMII CTCAG 3 cut(s) 114, 510, 1004
BseNI ACTGG 1 cut(s) 741
BseRI GAGGAG 1 cut(s) 392
BseXI GCAGC 1 cut(s) 727
BsgI GTGCAG 3 cut(s) 198, 492, 690
BshFI GGCC 1 cut(s) 963
BshTI ACCGGT 1 cut(s) 880
BshVI ATCGAT 2 cut(s) 85, 138
BsiSI CCGG 3 cut(s) 272, 293, 881
BslFI GGGAC 1 cut(s) 365
BsmAI GTCTC 1 cut(s) 968
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 3 cut(s) 300, 388, 729
BsnI GGCC 1 cut(s) 963
Bsp13I TCCGGA 1 cut(s) 271
Bsp143I GATC 8 cut(s) 126, 135, 139, 268, 496, 792, 889, 1014
Bsp19I CCATGG 2 cut(s) 280, 581
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 963
BspCNI CTCAG 3 cut(s) 115, 511, 1003
BspDI ATCGAT 2 cut(s) 85, 138
BspEI TCCGGA 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 718
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 2 cut(s) 143, 263
BsrFI RCCGGY 1 cut(s) 880
BsrI ACTGG 1 cut(s) 741
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 4 cut(s) 280, 581, 632, 964
BssMI GATC 8 cut(s) 126, 135, 139, 268, 496, 792, 889, 1014
BssT1I CCWWGG 3 cut(s) 280, 581, 632
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 3 cut(s) 196, 1047, 1073
Bst6I CTCTTC 1 cut(s) 149
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 5 cut(s) 70, 449, 516, 556, 786
BstDEI CTNAG 6 cut(s) 123, 332, 519, 801, 949, 990
BstDSI CCRYGG 3 cut(s) 280, 581, 964
BstF5I GGATG 3 cut(s) 156, 379, 1030
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 8 cut(s) 129, 138, 142, 271, 499, 795, 892, 1017
BstMAI GTCTC 1 cut(s) 968
BstMBI GATC 8 cut(s) 126, 135, 139, 268, 496, 792, 889, 1014
BstMWI GCNNNNNNNGC 2 cut(s) 515, 628
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 544
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 2 cut(s) 61, 310
BstV1I GCAGC 1 cut(s) 727
BstX2I RGATCY 3 cut(s) 126, 268, 792
BstYI RGATCY 3 cut(s) 126, 268, 792
Bsu15I ATCGAT 2 cut(s) 85, 138
BsuRI GGCC 1 cut(s) 963
BsuTUI ATCGAT 2 cut(s) 85, 138
BtgI CCRYGG 3 cut(s) 280, 581, 964
BtgZI GCGATG 1 cut(s) 945
BtsCI GGATG 3 cut(s) 156, 379, 1030
BtsIMutI CAGTG 1 cut(s) 120
BveI ACCTGC 1 cut(s) 718
Cac8I GCNNGC 5 cut(s) 70, 449, 516, 556, 786
CfoI GCGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 880
Cfr13I GGNCC 3 cut(s) 256, 287, 961
ClaI ATCGAT 2 cut(s) 85, 138
Csp6I GTAC 2 cut(s) 734, 919
CspAI ACCGGT 1 cut(s) 880
CviAII CATG 4 cut(s) 281, 541, 582, 958
CviQI GTAC 2 cut(s) 734, 919
DdeI CTNAG 6 cut(s) 123, 332, 519, 801, 949, 990
DpnI GATC 8 cut(s) 128, 137, 141, 270, 498, 794, 891, 1016
DpnII GATC 8 cut(s) 126, 135, 139, 268, 496, 792, 889, 1014
DriI GACNNNNNGTC 2 cut(s) 541, 584
Eam1104I CTCTTC 1 cut(s) 149
Eam1105I GACNNNNNGTC 2 cut(s) 541, 584
EarI CTCTTC 1 cut(s) 149
Eco130I CCWWGG 3 cut(s) 280, 581, 632
Eco47I GGWCC 2 cut(s) 256, 287
Eco57I CTGAAG 2 cut(s) 281, 429
EcoO109I RGGNCCY 1 cut(s) 256
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 1 cut(s) 131
EcoT14I CCWWGG 3 cut(s) 280, 581, 632
ErhI CCWWGG 3 cut(s) 280, 581, 632
FaeI CATG 4 cut(s) 284, 544, 585, 961
FaqI GGGAC 1 cut(s) 365
FatI CATG 4 cut(s) 280, 540, 581, 957
Fnu4HI GCNGC 1 cut(s) 741
FokI GGATG 3 cut(s) 143, 386, 1017
Fsp4HI GCNGC 1 cut(s) 741
FspBI CTAG 5 cut(s) 105, 555, 615, 702, 719
GlaI GCGC 1 cut(s) 452
GluI GCNGC 1 cut(s) 741
HaeIII GGCC 1 cut(s) 963
HapII CCGG 3 cut(s) 272, 293, 881
HhaI GCGC 1 cut(s) 453
Hin1II CATG 4 cut(s) 284, 544, 585, 961
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HinfI GANTC 7 cut(s) 11, 43, 53, 87, 247, 460, 1004
HpaII CCGG 3 cut(s) 272, 293, 881
HphI GGTGA 1 cut(s) 1036
Hpy166II GTNNAC 1 cut(s) 290
Hpy188I TCNGA 8 cut(s) 16, 48, 97, 470, 564, 1019, 1055, 1098
Hpy188III TCNNGA 9 cut(s) 200, 251, 272, 320, 407, 576, 625, 1012, 1034
Hpy8I GTNNAC 1 cut(s) 290
HpyAV CCTTC 5 cut(s) 102, 171, 437, 634, 947
HpyCH4III ACNGT 3 cut(s) 196, 1047, 1073
HpyCH4IV ACGT 2 cut(s) 175, 715
HpyF10VI GCNNNNNNNGC 2 cut(s) 515, 628
HpyF3I CTNAG 6 cut(s) 123, 332, 519, 801, 949, 990
HpySE526I ACGT 2 cut(s) 175, 715
Hsp92II CATG 4 cut(s) 284, 544, 585, 961
HspAI GCGC 1 cut(s) 451
Kpn2I TCCGGA 1 cut(s) 271
Kzo9I GATC 8 cut(s) 126, 135, 139, 268, 496, 792, 889, 1014
LmnI GCTCC 1 cut(s) 211
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 4 cut(s) 193, 418, 922, 1039
MaeI CTAG 5 cut(s) 105, 555, 615, 702, 719
MaeII ACGT 2 cut(s) 175, 715
MaeIII GTNAC 2 cut(s) 36, 769
MalI GATC 8 cut(s) 128, 137, 141, 270, 498, 794, 891, 1016
MboI GATC 8 cut(s) 126, 135, 139, 268, 496, 792, 889, 1014
MboII GAAGA 5 cut(s) 136, 274, 296, 649, 842
MfeI CAATTG 1 cut(s) 824
MflI RGATCY 3 cut(s) 126, 268, 792
MluCI AATT 7 cut(s) 151, 315, 338, 661, 678, 824, 862
MlyI GAGTC 2 cut(s) 5, 37
MroI TCCGGA 1 cut(s) 271
MseI TTAA 4 cut(s) 360, 369, 435, 1102
MslI CAYNNNNRTG 1 cut(s) 580
MspI CCGG 3 cut(s) 272, 293, 881
MspR9I CCNGG 1 cut(s) 133
MunI CAATTG 1 cut(s) 824
Mva1269I GAATGC 3 cut(s) 300, 388, 729
MvaI CCWGG 1 cut(s) 133
MwoI GCNNNNNNNGC 2 cut(s) 515, 628
NcoI CCATGG 2 cut(s) 280, 581
NdeII GATC 8 cut(s) 126, 135, 139, 268, 496, 792, 889, 1014
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 4 cut(s) 284, 544, 585, 961
NspI RCATGY 1 cut(s) 544
PctI GAATGC 3 cut(s) 300, 388, 729
PfeI GAWTC 5 cut(s) 53, 87, 247, 460, 1004
PflFI GACNNNGTC 2 cut(s) 941, 1073
PfoI TCCNGGA 1 cut(s) 131
PinAI ACCGGT 1 cut(s) 880
PkrI GCNGC 1 cut(s) 742
PleI GAGTC 2 cut(s) 5, 37
PpsI GAGTC 2 cut(s) 5, 37
PpuMI RGGWCCY 1 cut(s) 256
Psp5II RGGWCCY 1 cut(s) 256
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspPI GGNCC 3 cut(s) 256, 287, 961
PspPPI RGGWCCY 1 cut(s) 256
PstI CTGCAG 1 cut(s) 314
PsuI RGATCY 3 cut(s) 126, 268, 792
PsyI GACNNNGTC 2 cut(s) 941, 1073
RsaI GTAC 2 cut(s) 735, 920
RsaNI GTAC 2 cut(s) 734, 919
RseI CAYNNNNRTG 1 cut(s) 580
SaqAI TTAA 4 cut(s) 360, 369, 435, 1102
SatI GCNGC 1 cut(s) 741
Sau3AI GATC 8 cut(s) 126, 135, 139, 268, 496, 792, 889, 1014
Sau96I GGNCC 3 cut(s) 256, 287, 961
SchI GAGTC 2 cut(s) 5, 37
ScrFI CCNGG 1 cut(s) 133
SfaNI GCATC 4 cut(s) 193, 418, 922, 1039
SfcI CTRYAG 2 cut(s) 61, 310
SinI GGWCC 2 cut(s) 256, 287
SmiMI CAYNNNNRTG 1 cut(s) 580
SmlI CTYRAG 4 cut(s) 251, 623, 925, 1010
SmoI CTYRAG 4 cut(s) 251, 623, 925, 1010
Sse9I AATT 7 cut(s) 151, 315, 338, 661, 678, 824, 862
SsiI CCGC 1 cut(s) 242
SspMI CTAG 5 cut(s) 105, 555, 615, 702, 719
StyD4I CCNGG 1 cut(s) 131
StyI CCWWGG 3 cut(s) 280, 581, 632
TaaI ACNGT 3 cut(s) 196, 1047, 1073
TaiI ACGT 2 cut(s) 178, 718
TaqI TCGA 6 cut(s) 56, 85, 138, 214, 657, 780
TasI AATT 7 cut(s) 151, 315, 338, 661, 678, 824, 862
TatI WGTACW 1 cut(s) 733
TfiI GAWTC 5 cut(s) 53, 87, 247, 460, 1004
Tru1I TTAA 4 cut(s) 360, 369, 435, 1102
Tru9I TTAA 4 cut(s) 360, 369, 435, 1102
TscAI CASTG 1 cut(s) 127
TseI GCWGC 1 cut(s) 740
TspDTI ATGAA 3 cut(s) 456, 828, 1104
TspGWI ACGGA 2 cut(s) 407, 744
TspRI CASTG 1 cut(s) 127
Tth111I GACNNNGTC 2 cut(s) 941, 1073
VpaK11BI GGWCC 2 cut(s) 256, 287
XapI RAATTY 2 cut(s) 315, 862
XceI RCATGY 1 cut(s) 544
XspI CTAG 5 cut(s) 105, 555, 615, 702, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.