Prupe.8G181200_v2.0.a1

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0011219
Physical Location & Seq
Reverse (-)
18150323 .. 18153404
3082 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G181200.1

Sequence Viewer

Length: 1098 bp
ATGGAGAGCGCATCAGAAATGGTGGCATTTCCATTGCTGACGACGCCGATCGAATCGAACTACAGAGCCTGCACCATCCCCTTCAGGTTTCCCTCCGACAATCCTCGCAAGGCAACCCCGACTGAGCTGGCATGGATCGACCTCTTCCTCAACTCCATCCCTTCCTTCAAGAAGCGAGCTGAGACCGATGCTGTTGACGATGCTCCGGCTAGAGCTGAAAAATTTGCTCAAAGGTACTCTGGGATACTTGAGGACTTGAAGAAGGACCCTGAGAGTCATGGTGGCCCACCAGATTGCATTCTTCTTTGCAGACTTCGTGAGCAAGTCCTTAGGGAGTTGGGGTTCAAGGATATATTTAAGAAAGTCAAGGATGAAGAGAATGCAAAGGCCATATCCCTGTTTGAGAATGTAGTGGATTTAAGTGATGCTATTGAAGATGAAGGAAAGCGCCTAGAGAATCTCGTTAGAGGGATATTTGCTGGAAACATATTTGATCTTGGTTCTGCACAGCTCGCAGAAGTTTTCTCAAAGGATGGTATGTCCTTTTTAGCTAGTTGCCAAAACCTTGTCCCTCGACCCTGGGTTATCGATGACTTGGACGCTTTCAAATTGAAATGGAGCAAGAAATCTTGGAAAAAGGCTGTTATATTTGTTGACAATTCTGGTGCGGATATTATTTTGGGAATTTTGCCATTTGCAAGAGAGTTACTCCGGCGTGGGACACAGGTTGTGTTGGCAGCTAATGACTTGCCTTCTATCAATGACATAACTTACCCTGAACTGATTGAGATTATATCAAAGTTGAAGGACAATGAGGGGAAGCTCAAGGGTGTTGATACTTCAAATCTTTTCATTGCCAATTCTGGTAATGATATGCCGGTTATTGATCTTTCAAGCGTGTCACAAGAGATTGCCTACCTGGCGAGTGATGCAGACCTAGTTATTATGGAAGGAATGGGTCGTGGGATAGAGACAAATCTTTATGCGCAATTTAAGTGTGATTCCCTCAAGATTGGGATGGTGAAACATCCCGAGGTTGCCCAGTTTCTAGGAGGAAGGCTTTATGATTGCGTCTTCAAATACAATGAAGTTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

366

Amino Acids

40.67

Weight (kDa)

4.92

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 987
AciI CCGC 1 cut(s) 668
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 2 cut(s) 221, 684
AcuI CTGAAG 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 236
AjnI CCWGG 2 cut(s) 578, 918
AloI GAACNNNNNNTCC 2 cut(s) 326, 358
AluBI AGCT 7 cut(s) 127, 179, 215, 511, 551, 740, 823
AluI AGCT 7 cut(s) 127, 179, 215, 511, 551, 740, 823
Alw26I GTCTC 2 cut(s) 176, 965
AlwI GGATC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 69
Ama87I CYCGRG 1 cut(s) 1031
AoxI GGCC 2 cut(s) 283, 387
ApeKI GCWGC 1 cut(s) 737
ApoI RAATTY 2 cut(s) 221, 684
AspLEI GCGC 3 cut(s) 11, 450, 988
AspS9I GGNCC 2 cut(s) 265, 284
AsuHPI GGTGA 1 cut(s) 1033
AvaI CYCGRG 1 cut(s) 1031
AvaII GGWCC 1 cut(s) 265
AxyI CCTNAGG 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 1066
BbvI GCAGC 1 cut(s) 749
BccI CCATC 4 cut(s) 83, 164, 527, 1012
BciT130I CCWGG 2 cut(s) 580, 920
BciVI GTATCC 1 cut(s) 237
BcoDI GTCTC 2 cut(s) 176, 965
BfaI CTAG 5 cut(s) 210, 452, 552, 938, 1049
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 451
BfuI GTATCC 1 cut(s) 237
BglI GCCNNNNNGGC 1 cut(s) 920
BisI GCNGC 1 cut(s) 738
BlsI GCNGC 1 cut(s) 739
Bme1390I CCNGG 2 cut(s) 580, 920
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 1031
BmgT120I GGNCC 2 cut(s) 265, 284
BmiI GGNNCC 1 cut(s) 267
BmrFI CCNGG 2 cut(s) 580, 920
BmrI ACTGGG 1 cut(s) 1036
BmsI GCATC 5 cut(s) 20, 178, 190, 415, 919
BmuI ACTGGG 1 cut(s) 1036
BpiI GAAGAC 1 cut(s) 1066
BplI GAGNNNNNCTC 2 cut(s) 693, 725
BpuEI CTTGAG 3 cut(s) 269, 809, 992
Bsa29I ATCGAT 1 cut(s) 588
BsaHI GRCGYC 1 cut(s) 44
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 3 cut(s) 578, 579, 1032
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bse118I RCCGGY 1 cut(s) 877
Bse1I ACTGG 1 cut(s) 1042
Bse21I CCTNAGG 1 cut(s) 329
Bse3DI GCAATG 2 cut(s) 32, 852
BseBI CCWGG 2 cut(s) 580, 920
BseCI ATCGAT 1 cut(s) 588
BseDI CCNNGG 3 cut(s) 578, 579, 1032
BseGI GGATG 6 cut(s) 75, 156, 376, 538, 1023, 1027
BseMI GCAATG 2 cut(s) 32, 852
BseMII CTCAG 3 cut(s) 114, 171, 261
BseNI ACTGG 1 cut(s) 1042
BseXI GCAGC 1 cut(s) 749
BsgI GTGCAG 2 cut(s) 55, 489
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 2 cut(s) 285, 389
BshVI ATCGAT 1 cut(s) 588
BsiEI CGRYCG 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 1031
BsiSI CCGG 3 cut(s) 206, 712, 878
BslFI GGGAC 2 cut(s) 554, 733
BsmAI GTCTC 2 cut(s) 176, 965
BsmFI GGGAC 2 cut(s) 554, 733
BsmI GAATGC 2 cut(s) 297, 385
BsnI GGCC 2 cut(s) 285, 389
Bso31I GGTCTC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 1031
Bsp143I GATC 4 cut(s) 48, 135, 493, 886
BspACI CCGC 1 cut(s) 668
BspANI GGCC 2 cut(s) 285, 389
BspCNI CTCAG 3 cut(s) 115, 172, 262
BspDI ATCGAT 1 cut(s) 588
BspLI GGNNCC 1 cut(s) 267
BspPI GGATC 1 cut(s) 143
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 2 cut(s) 32, 852
BsrFI RCCGGY 1 cut(s) 877
BsrI ACTGG 1 cut(s) 1042
BssAI RCCGGY 1 cut(s) 877
BssECI CCNNGG 3 cut(s) 578, 579, 1032
BssMI GATC 4 cut(s) 48, 135, 493, 886
BssNI GRCGYC 1 cut(s) 44
Bst2UI CCWGG 2 cut(s) 580, 920
Bst6I CTCTTC 2 cut(s) 149, 369
BstACI GRCGYC 1 cut(s) 44
BstC8I GCNNGC 4 cut(s) 70, 129, 177, 513
BstDEI CTNAG 4 cut(s) 123, 180, 270, 329
BstF5I GGATG 6 cut(s) 75, 156, 376, 538, 1023, 1027
BstH2I RGCGCY 1 cut(s) 451
BstHHI GCGC 3 cut(s) 11, 450, 988
BstKTI GATC 4 cut(s) 51, 138, 496, 889
BstMAI GTCTC 2 cut(s) 176, 965
BstMBI GATC 4 cut(s) 48, 135, 493, 886
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 43, 512, 920, 929
BstNI CCWGG 2 cut(s) 580, 920
BstSCI CCNGG 2 cut(s) 578, 918
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 749
BstV2I GAAGAC 1 cut(s) 1066
Bsu15I ATCGAT 1 cut(s) 588
Bsu36I CCTNAGG 1 cut(s) 329
BsuI GTATCC 1 cut(s) 237
BsuRI GGCC 2 cut(s) 285, 389
BsuTUI ATCGAT 1 cut(s) 588
BtsCI GGATG 6 cut(s) 75, 156, 376, 538, 1023, 1027
Cac8I GCNNGC 4 cut(s) 70, 129, 177, 513
CaiI CAGNNNCTG 1 cut(s) 69
CfoI GCGC 3 cut(s) 11, 450, 988
Cfr10I RCCGGY 1 cut(s) 877
Cfr13I GGNCC 2 cut(s) 265, 284
ClaI ATCGAT 1 cut(s) 588
CseI GACGC 3 cut(s) 52, 608, 1060
Csp6I GTAC 1 cut(s) 235
CviAII CATG 2 cut(s) 132, 278
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 4 cut(s) 123, 180, 270, 329
DpnI GATC 4 cut(s) 50, 137, 495, 888
DpnII GATC 4 cut(s) 48, 135, 493, 886
Eam1104I CTCTTC 2 cut(s) 149, 369
EarI CTCTTC 2 cut(s) 149, 369
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 67
Eco81I CCTNAGG 1 cut(s) 329
Eco88I CYCGRG 1 cut(s) 1031
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 2 cut(s) 578, 918
FaeI CATG 2 cut(s) 135, 281
FaqI GGGAC 2 cut(s) 554, 733
FatI CATG 2 cut(s) 131, 277
Fnu4HI GCNGC 1 cut(s) 738
FokI GGATG 6 cut(s) 62, 143, 383, 545, 1014, 1030
Fsp4HI GCNGC 1 cut(s) 738
FspBI CTAG 5 cut(s) 210, 452, 552, 938, 1049
FspI TGCGCA 1 cut(s) 987
GlaI GCGC 3 cut(s) 10, 449, 987
GluI GCNGC 1 cut(s) 738
HaeII RGCGCY 1 cut(s) 451
HaeIII GGCC 2 cut(s) 285, 389
HapII CCGG 3 cut(s) 206, 712, 878
HgaI GACGC 3 cut(s) 52, 608, 1060
HhaI GCGC 3 cut(s) 11, 450, 988
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 2 cut(s) 135, 281
Hin6I GCGC 3 cut(s) 9, 448, 986
HinP1I GCGC 3 cut(s) 9, 448, 986
HincII GTYRAC 2 cut(s) 196, 655
HindII GTYRAC 2 cut(s) 196, 655
HinfI GANTC 4 cut(s) 53, 274, 457, 1001
HpaII CCGG 3 cut(s) 206, 712, 878
HphI GGTGA 1 cut(s) 1033
Hpy166II GTNNAC 2 cut(s) 196, 655
Hpy188I TCNGA 2 cut(s) 16, 97
Hpy188III TCNNGA 4 cut(s) 169, 317, 1009, 1031
Hpy8I GTNNAC 2 cut(s) 196, 655
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 9 cut(s) 91, 171, 175, 256, 434, 762, 799, 944, 1050
HpyCH4V TGCA 7 cut(s) 72, 297, 309, 383, 506, 698, 932
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 512, 920, 929
HpyF3I CTNAG 4 cut(s) 123, 180, 270, 329
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 2 cut(s) 135, 281
HspAI GCGC 3 cut(s) 9, 448, 986
Kzo9I GATC 4 cut(s) 48, 135, 493, 886
LmnI GCTCC 2 cut(s) 208, 618
Lsp1109I GCAGC 1 cut(s) 749
LweI GCATC 5 cut(s) 20, 178, 190, 415, 919
MaeI CTAG 5 cut(s) 210, 452, 552, 938, 1049
MaeIII GTNAC 2 cut(s) 705, 900
MalI GATC 4 cut(s) 50, 137, 495, 888
MboI GATC 4 cut(s) 48, 135, 493, 886
MboII GAAGA 6 cut(s) 136, 271, 293, 386, 446, 1066
MluCI AATT 6 cut(s) 221, 608, 658, 684, 859, 989
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 120
MseI TTAA 3 cut(s) 357, 419, 993
MspI CCGG 3 cut(s) 206, 712, 878
MspR9I CCNGG 2 cut(s) 580, 920
Mva1269I GAATGC 2 cut(s) 297, 385
MvaI CCWGG 2 cut(s) 580, 920
MwoI GCNNNNNNNGC 4 cut(s) 43, 512, 920, 929
NdeII GATC 4 cut(s) 48, 135, 493, 886
NlaIII CATG 2 cut(s) 135, 281
NlaIV GGNNCC 1 cut(s) 267
NmuCI GTSAC 1 cut(s) 900
NsbI TGCGCA 1 cut(s) 987
PasI CCCWGGG 1 cut(s) 579
PctI GAATGC 2 cut(s) 297, 385
PfeI GAWTC 3 cut(s) 53, 457, 1001
PkrI GCNGC 1 cut(s) 739
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 1 cut(s) 265
Psp5II RGGWCCY 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 578, 918
PspGI CCWGG 2 cut(s) 578, 918
PspN4I GGNNCC 1 cut(s) 267
PspPI GGNCC 2 cut(s) 265, 284
PspPPI RGGWCCY 1 cut(s) 265
PstNI CAGNNNCTG 1 cut(s) 69
PvuI CGATCG 1 cut(s) 51
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
SaqAI TTAA 3 cut(s) 357, 419, 993
SatI GCNGC 1 cut(s) 738
Sau3AI GATC 4 cut(s) 48, 135, 493, 886
Sau96I GGNCC 2 cut(s) 265, 284
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 580, 920
SfaNI GCATC 5 cut(s) 20, 178, 190, 415, 919
SfcI CTRYAG 1 cut(s) 61
SinI GGWCC 1 cut(s) 265
SmlI CTYRAG 3 cut(s) 248, 824, 1007
SmoI CTYRAG 3 cut(s) 248, 824, 1007
Sse9I AATT 6 cut(s) 221, 608, 658, 684, 859, 989
SsiI CCGC 1 cut(s) 668
SspMI CTAG 5 cut(s) 210, 452, 552, 938, 1049
StyD4I CCNGG 2 cut(s) 578, 918
TaqI TCGA 5 cut(s) 51, 56, 138, 574, 588
TaqII GACCGA 1 cut(s) 200
TasI AATT 6 cut(s) 221, 608, 658, 684, 859, 989
TfiI GAWTC 3 cut(s) 53, 457, 1001
Tru1I TTAA 3 cut(s) 357, 419, 993
Tru9I TTAA 3 cut(s) 357, 419, 993
TseFI GTSAC 1 cut(s) 900
TseI GCWGC 1 cut(s) 737
Tsp45I GTSAC 1 cut(s) 900
TspDTI ATGAA 3 cut(s) 387, 453, 841
VpaK11BI GGWCC 1 cut(s) 265
XapI RAATTY 2 cut(s) 221, 684
XspI CTAG 5 cut(s) 210, 452, 552, 938, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.