MD05G1141200.v1.1

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0011219
Physical Location & Seq
Reverse (-)
27160866 .. 27171936
11071 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1141200.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGGAGAGCGCATCAGAAATGGTGGCATTTCCACTGCTGACGACGCCGATCGAATCCAACTACAGAGCCTGCACCATCCCCTACAGATTTCCCTCCGACAACCCCCGCAAGCCCACGCCGACTGAGCTCTCCTGGATCGACCTCTTCTACAACTCCACCCCCTCCTTCAAGAAAAGAGCTGAGTCCGACGCTTCGGTTGCCGACGCTCCGGCCAGAGCTGAGAAATTTGCTCAAAGGTACACTGAGATACTGGAGGACTTGAAGAAGGATCCTGAGAGTCACGGCGGCCCGCCGGATTGCATTCTTCTTTGCAGACTTCGGGAGCAAGTTCTTAGGGAGTTGGGATTCCAAGATATATTCAAGAAAGTCAAGGATGAAGAGAATGCCAAGGCAATATCCCTGTTTGAGAATGTAGTGGATCTTAATGATGCTATTGAAGATGAAGTCAAGCGGGTAGAGAATCTGATTAGAGGAATATTTGCCGGAAATATATTTGATCTTGGTTCTGCACAGCTTGCAGAAGTTTTCTCAAAGGATGGTATGTCCTTTTTAGCTAGTTGTCAAAACCTTGTCCCTCGACCTTGGGTTATCGATGACTTGGACGCTTTCAAATTAAAATGGACCAAGAAATCTTGGAAAAAGGCTGTTATTTTTGTTGACAATTCTGGTGCTGATATTATCTTGGGTATTTTGCCATTTGCCAGAGAGTTACTCCGGCGTGGGACACAGGTTGTGTTGGCAGCTAATGACTTGCCTTCTATCAACGACGTAACTTACACTGAACTGATTGAGATTATATCAAGGTTGAAGGACAAAAACGGACAGCTCAAGGGTGTTGATACTTCAAAGCTTTTGATTGCTAATTCAGGCAATGATTTGCCGGTTATTGATCTTTCAAGAGTGTCACAAGAGCTTGCCCACCTGGCAAGTGATGCAGACCTAGTTATTTTGGAAGGAATGGGCCGTGGGATAGAGACAAATCTTTATGCACAATTTAAGTGCGATTCCCTTAAGATTGGGATGGTGAAACATCCAGAGGTTGCCCAGTTTCTAGGAGGAAGGCTCTATGACTGCGTCTTCAAATACAACGAAGTTTTGTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

369

Amino Acids

41.16

Weight (kDa)

5.09

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 50 - 359 4.5e-68 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 106, 285, 290, 451
AclWI GGATC 4 cut(s) 143, 263, 276, 426
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 224
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 1 cut(s) 239
AflII CTTAAG 1 cut(s) 1010
AgsI TTSAA 9 cut(s) 169, 262, 361, 437, 610, 808, 846, 897, 1081
AjnI CCWGG 2 cut(s) 131, 921
AluBI AGCT 9 cut(s) 127, 179, 218, 514, 554, 743, 826, 850, 913
AluI AGCT 9 cut(s) 127, 179, 218, 514, 554, 743, 826, 850, 913
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 968
AlwI GGATC 4 cut(s) 143, 263, 276, 426
AlwNI CAGNNNCTG 1 cut(s) 69
AoxI GGCC 3 cut(s) 210, 286, 961
ApeKI GCWGC 1 cut(s) 740
ApoI RAATTY 1 cut(s) 224
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 287, 621, 961
AsuHPI GGTGA 1 cut(s) 1036
AvaII GGWCC 1 cut(s) 621
BamHI GGATCC 1 cut(s) 268
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 1069
Bbv12I GWGCWC 1 cut(s) 129
BbvI GCAGC 1 cut(s) 752
BccI CCATC 3 cut(s) 83, 530, 1015
BceAI ACGGC 2 cut(s) 298, 948
BciT130I CCWGG 2 cut(s) 133, 923
BcoDI GTCTC 1 cut(s) 968
BfaI CTAG 3 cut(s) 555, 941, 1052
BfmI CTRYAG 2 cut(s) 61, 82
BfrI CTTAAG 1 cut(s) 1010
BglI GCCNNNNNGGC 1 cut(s) 923
BisI GCNGC 2 cut(s) 286, 741
BlsI GCNGC 2 cut(s) 287, 742
Bme1390I CCNGG 2 cut(s) 133, 923
Bme18I GGWCC 1 cut(s) 621
BmgT120I GGNCC 3 cut(s) 287, 621, 961
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 133, 923
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 3 cut(s) 20, 418, 922
BmuI ACTGGG 1 cut(s) 1039
BpiI GAAGAC 1 cut(s) 1069
BplI GAGNNNNNCTC 4 cut(s) 696, 728, 1047, 1079
BpmI CTGGAG 1 cut(s) 272
BpuEI CTTGAG 1 cut(s) 812
Bsa29I ATCGAT 1 cut(s) 591
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 387, 581, 964
Bse118I RCCGGY 1 cut(s) 880
Bse1I ACTGG 2 cut(s) 255, 1045
Bse3DI GCAATG 1 cut(s) 877
BseBI CCWGG 2 cut(s) 133, 923
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 3 cut(s) 387, 581, 964
BseGI GGATG 5 cut(s) 75, 379, 541, 1026, 1030
BseMI GCAATG 1 cut(s) 877
BseMII CTCAG 5 cut(s) 114, 171, 210, 234, 264
BseNI ACTGG 2 cut(s) 255, 1045
BseXI GCAGC 1 cut(s) 752
BsgI GTGCAG 2 cut(s) 55, 492
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 3 cut(s) 212, 288, 963
BshVI ATCGAT 1 cut(s) 591
BsiEI CGRYCG 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 5 cut(s) 209, 293, 483, 715, 881
BslFI GGGAC 2 cut(s) 557, 736
BsmAI GTCTC 1 cut(s) 968
BsmFI GGGAC 2 cut(s) 557, 736
BsmI GAATGC 2 cut(s) 300, 388
BsnI GGCC 3 cut(s) 212, 288, 963
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 6 cut(s) 48, 135, 268, 418, 496, 889
BspACI CCGC 4 cut(s) 106, 285, 290, 451
BspANI GGCC 3 cut(s) 212, 288, 963
BspCNI CTCAG 5 cut(s) 115, 172, 211, 235, 265
BspDI ATCGAT 1 cut(s) 591
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 4 cut(s) 143, 263, 276, 426
BspTI CTTAAG 1 cut(s) 1010
BsrDI GCAATG 1 cut(s) 877
BsrFI RCCGGY 1 cut(s) 880
BsrI ACTGG 2 cut(s) 255, 1045
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 3 cut(s) 387, 581, 964
BssMI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 387, 581
Bst2UI CCWGG 2 cut(s) 133, 923
Bst6I CTCTTC 2 cut(s) 149, 372
BstACI GRCGYC 1 cut(s) 44
BstAFI CTTAAG 1 cut(s) 1010
BstAPI GCANNNNNTGC 2 cut(s) 515, 932
BstC8I GCNNGC 5 cut(s) 70, 110, 290, 516, 915
BstDEI CTNAG 6 cut(s) 123, 180, 219, 243, 273, 332
BstDSI CCRYGG 1 cut(s) 964
BstF5I GGATG 5 cut(s) 75, 379, 541, 1026, 1030
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 6 cut(s) 51, 138, 271, 421, 499, 892
BstMAI GTCTC 1 cut(s) 968
BstMBI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 6 cut(s) 43, 124, 197, 515, 923, 932
BstNI CCWGG 2 cut(s) 133, 923
BstSCI CCNGG 2 cut(s) 131, 921
BstSFI CTRYAG 2 cut(s) 61, 82
BstV1I GCAGC 1 cut(s) 752
BstV2I GAAGAC 1 cut(s) 1069
BstX2I RGATCY 2 cut(s) 268, 418
BstYI RGATCY 2 cut(s) 268, 418
Bsu15I ATCGAT 1 cut(s) 591
BsuRI GGCC 3 cut(s) 212, 288, 963
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 1 cut(s) 964
BtsCI GGATG 5 cut(s) 75, 379, 541, 1026, 1030
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 3 cut(s) 32, 240, 777
Cac8I GCNNGC 5 cut(s) 70, 110, 290, 516, 915
CaiI CAGNNNCTG 1 cut(s) 69
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 880
Cfr13I GGNCC 3 cut(s) 287, 621, 961
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 5 cut(s) 52, 197, 212, 611, 1063
Csp6I GTAC 1 cut(s) 238
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 6 cut(s) 123, 180, 219, 243, 273, 332
DpnI GATC 6 cut(s) 50, 137, 270, 420, 498, 891
DpnII GATC 6 cut(s) 48, 135, 268, 418, 496, 889
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 149, 372
EarI CTCTTC 2 cut(s) 149, 372
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 2 cut(s) 387, 581
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 621
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRII CCWGG 2 cut(s) 131, 921
EcoT14I CCWWGG 2 cut(s) 387, 581
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 2 cut(s) 387, 581
FaiI YATR 6 cut(s) 356, 491, 542, 797, 987, 1068
FaqI GGGAC 2 cut(s) 557, 736
FauI CCCGC 3 cut(s) 113, 297, 444
Fnu4HI GCNGC 2 cut(s) 286, 741
FokI GGATG 5 cut(s) 62, 386, 548, 1017, 1033
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 2 cut(s) 286, 741
FspBI CTAG 3 cut(s) 555, 941, 1052
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 286, 741
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 3 cut(s) 212, 288, 963
HapII CCGG 5 cut(s) 209, 293, 483, 715, 881
HgaI GACGC 5 cut(s) 52, 197, 212, 611, 1063
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 44
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 6 cut(s) 53, 182, 277, 345, 460, 1004
HpaII CCGG 5 cut(s) 209, 293, 483, 715, 881
HphI GGTGA 1 cut(s) 1036
Hpy166II GTNNAC 2 cut(s) 240, 658
Hpy188I TCNGA 4 cut(s) 16, 97, 187, 465
Hpy188III TCNNGA 6 cut(s) 169, 272, 320, 361, 897, 1034
Hpy8I GTNNAC 2 cut(s) 240, 658
Hpy99I CGWCG 4 cut(s) 46, 191, 206, 770
HpyAV CCTTC 6 cut(s) 175, 259, 765, 802, 947, 1053
HpyCH4IV ACGT 1 cut(s) 768
HpyCH4V TGCA 7 cut(s) 72, 300, 312, 509, 518, 935, 989
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 124, 197, 515, 923, 932
HpyF3I CTNAG 6 cut(s) 123, 180, 219, 243, 273, 332
HpySE526I ACGT 1 cut(s) 768
Hsp92I GRCGYC 1 cut(s) 44
HspAI GCGC 1 cut(s) 9
Kzo9I GATC 6 cut(s) 48, 135, 268, 418, 496, 889
LmnI GCTCC 2 cut(s) 211, 322
Lsp1109I GCAGC 1 cut(s) 752
LweI GCATC 3 cut(s) 20, 418, 922
MaeI CTAG 3 cut(s) 555, 941, 1052
MaeII ACGT 1 cut(s) 768
MaeIII GTNAC 4 cut(s) 278, 708, 769, 903
MalI GATC 6 cut(s) 50, 137, 270, 420, 498, 891
MboI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
MboII GAAGA 6 cut(s) 136, 274, 296, 389, 449, 1069
MflI RGATCY 2 cut(s) 268, 418
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 5 cut(s) 224, 611, 661, 862, 992
MlyI GAGTC 2 cut(s) 191, 286
MmeI TCCRAC 3 cut(s) 81, 120, 210
MnlI CCTC 8 cut(s) 103, 152, 172, 247, 464, 585, 1030, 1049
MseI TTAA 4 cut(s) 423, 614, 996, 1011
MspCI CTTAAG 1 cut(s) 1010
MspI CCGG 5 cut(s) 209, 293, 483, 715, 881
MspR9I CCNGG 2 cut(s) 133, 923
Mva1269I GAATGC 2 cut(s) 300, 388
MvaI CCWGG 2 cut(s) 133, 923
MwoI GCNNNNNNNGC 6 cut(s) 43, 124, 197, 515, 923, 932
NdeII GATC 6 cut(s) 48, 135, 268, 418, 496, 889
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 278, 903
PctI GAATGC 2 cut(s) 300, 388
PfeI GAWTC 4 cut(s) 53, 345, 460, 1004
PflFI GACNNNGTC 1 cut(s) 1073
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 2 cut(s) 287, 742
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 2 cut(s) 190, 285
PpsI GAGTC 2 cut(s) 190, 285
Psp124BI GAGCTC 1 cut(s) 129
Psp6I CCWGG 2 cut(s) 131, 921
PspGI CCWGG 2 cut(s) 131, 921
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 3 cut(s) 287, 621, 961
PstNI CAGNNNCTG 1 cut(s) 69
PsuI RGATCY 2 cut(s) 268, 418
PsyI GACNNNGTC 1 cut(s) 1073
PvuI CGATCG 1 cut(s) 51
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 4 cut(s) 423, 614, 996, 1011
SatI GCNGC 2 cut(s) 286, 741
Sau3AI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
Sau96I GGNCC 3 cut(s) 287, 621, 961
SchI GAGTC 2 cut(s) 191, 286
ScrFI CCNGG 2 cut(s) 133, 923
SduI GDGCHC 1 cut(s) 129
SfaNI GCATC 3 cut(s) 20, 418, 922
SfcI CTRYAG 2 cut(s) 61, 82
SinI GGWCC 1 cut(s) 621
SmlI CTYRAG 2 cut(s) 827, 1010
SmoI CTYRAG 2 cut(s) 827, 1010
Sse9I AATT 5 cut(s) 224, 611, 661, 862, 992
SsiI CCGC 4 cut(s) 106, 285, 290, 451
SspI AATATT 1 cut(s) 477
SspMI CTAG 3 cut(s) 555, 941, 1052
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 2 cut(s) 131, 921
StyI CCWWGG 2 cut(s) 387, 581
TaiI ACGT 1 cut(s) 771
TaqI TCGA 4 cut(s) 51, 138, 577, 591
TasI AATT 5 cut(s) 224, 611, 661, 862, 992
TauI GCSGC 1 cut(s) 288
TfiI GAWTC 4 cut(s) 53, 345, 460, 1004
Tru1I TTAA 4 cut(s) 423, 614, 996, 1011
Tru9I TTAA 4 cut(s) 423, 614, 996, 1011
TscAI CASTG 3 cut(s) 39, 247, 784
TseFI GTSAC 2 cut(s) 278, 903
TseI GCWGC 1 cut(s) 740
Tsp45I GTSAC 2 cut(s) 278, 903
TspDTI ATGAA 2 cut(s) 390, 456
TspGWI ACGGA 1 cut(s) 834
TspRI CASTG 3 cut(s) 39, 247, 784
Tth111I GACNNNGTC 1 cut(s) 1073
Vha464I CTTAAG 1 cut(s) 1010
VpaK11BI GGWCC 1 cut(s) 621
XapI RAATTY 1 cut(s) 224
XspI CTAG 3 cut(s) 555, 941, 1052
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.