FvH4_2g16941

At2g17340-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0011219
Physical Location & Seq
Reverse (-)
14709518 .. 14712825
3308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g16941.t2

Sequence Viewer

Length: 1104 bp
ATGGAGAGCGCATCAGAACTGGTGGCATTTCCGCTGCTGACGACGCCGATCGAATCGAACTACAGAGCTTGCACCATCCCTTACCGCTTCCCCTCCGACAATCCCCGCAAGCCCACCCCCACTGAGATTGCCTGGATCGACCTCTTCCTCAACTCCATCCCTTCCTTCAAGAAGCGCGCTGAGAGTGATGCTACAGTCAGTGATGCTCCTGCTAAAGCTGAGTTGTTTGCTCACAGGTACTCCGAGATGCTTGAGGACTTGAAGAAGGATCCCGAGAGTCACGGCGGTCCGCCTGATTGCATTCTACTTTGCAGGCTTCGGGAGATAGTTCTTAGGGAGTTGGGGTTCAGAGATATATTCAAGAAAGTCAAGGATGAAGAGAATGCAAAGGTGATTACCCTGTTTGATAATGTGGTGGATCTTAACGATGCTATTGAAGATGAAGGGAAGCGAGTAGAGAATCTGGTTAGAGGGATATTTGCTGGGAATATATTTGATCTTGGTTCTGCACAGCTTGCTGAAGTTTTTTCAAAGGATGGTATGTCTTTTCTAGCTAGTTGTCAAAACCTTGTCCCTCGACCTTGGGTTATTGATGACCTGGACGCTTTCAAGTTGAAATGGAGCAAGAAGTCTTGGAAAAAGGCTGTTATATTTGTTGACAATTCTGGTGCTGATATTATTTTGGGTATCTTACCATTTGCAAGAGAGTTACTCCGTCGTGGTACACAGGTTGTGTTGGCTGCCAACGACATGCCTTCCATCAATGATGTGACCTACCATGAACTGATTGAGATTATAGCAAAGTTGAAGGACAACCATGGGAAGCTCAAAGGTGTTGATACTACAAATCTTTTTATTGCCAATTCGGGTAATGATTTGCCGGTTATTGATCTTGCAAGTGTCTCACAAGAGCTTGCTTACCTGGCCAGTGATGCAGACCTAGTTATCTTGGAAGGGATGGGTCGTGGCATCGAGACAAATCTTTATGCGCAGTTCAAATGTGATTCCCTGAAGATTGGAATGGTGAAACATCCGGAGGTTGCCCAGTTTCTTGGAGGACGGTTATATGATTGCGTCTTCAAATACAATGAAGTTTTGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

368

Amino Acids

40.94

Weight (kDa)

5.07

Isoelectric Point (pI)

33.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 52 - 287 2.5e-50 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 990
AccII CGCG 1 cut(s) 177
AccIII TCCGGA 1 cut(s) 1033
AciI CCGC 5 cut(s) 32, 85, 106, 285, 290
AclWI GGATC 4 cut(s) 143, 263, 276, 426
AcoI YGGCCR 1 cut(s) 924
AcuI CTGAAG 2 cut(s) 540, 1031
AcyI GRCGYC 1 cut(s) 44
AfaI GTAC 2 cut(s) 239, 724
AjnI CCWGG 3 cut(s) 131, 597, 921
AloI GAACNNNNNNTCC 2 cut(s) 329, 361
AluBI AGCT 6 cut(s) 68, 218, 514, 554, 826, 913
AluI AGCT 6 cut(s) 68, 218, 514, 554, 826, 913
Alw26I GTCTC 2 cut(s) 907, 968
AlwI GGATC 4 cut(s) 143, 263, 276, 426
Ama87I CYCGRG 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 1033
AoxI GGCC 1 cut(s) 924
ApeKI GCWGC 2 cut(s) 34, 740
AspLEI GCGC 4 cut(s) 11, 177, 179, 991
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 403, 1036
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 1 cut(s) 287
BaeI ACNNNNGTAYC 2 cut(s) 714, 747
BalI TGGCCA 1 cut(s) 926
BamHI GGATCC 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 1069
BbvI GCAGC 2 cut(s) 21, 727
BccI CCATC 5 cut(s) 83, 164, 530, 767, 952
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 3 cut(s) 133, 599, 923
BcoDI GTCTC 2 cut(s) 907, 968
BfaI CTAG 3 cut(s) 551, 555, 941
BfmI CTRYAG 2 cut(s) 61, 192
BisI GCNGC 2 cut(s) 35, 741
BlsI GCNGC 2 cut(s) 36, 742
Bme1390I CCNGG 3 cut(s) 133, 599, 923
Bme18I GGWCC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 3 cut(s) 133, 599, 923
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 7 cut(s) 20, 178, 193, 237, 418, 922, 978
BmuI ACTGGG 1 cut(s) 1039
BpiI GAAGAC 1 cut(s) 1069
BplI GAGNNNNNCTC 2 cut(s) 696, 728
BpuEI CTTGAG 1 cut(s) 272
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 581, 817
BsaWI WCCGGW 1 cut(s) 1033
BsaXI ACNNNNNCTCC 4 cut(s) 224, 254, 329, 359
Bse118I RCCGGY 1 cut(s) 880
Bse1I ACTGG 3 cut(s) 24, 927, 1045
BseAI TCCGGA 1 cut(s) 1033
BseBI CCWGG 3 cut(s) 133, 599, 923
BseDI CCNNGG 2 cut(s) 581, 817
BseGI GGATG 6 cut(s) 75, 156, 379, 541, 963, 1030
BseMII CTCAG 3 cut(s) 114, 171, 210
BseNI ACTGG 3 cut(s) 24, 927, 1045
BsePI GCGCGC 1 cut(s) 175
BseXI GCAGC 2 cut(s) 21, 727
BseYI CCCAGC 1 cut(s) 482
BsgI GTGCAG 1 cut(s) 492
Bsh1236I CGCG 1 cut(s) 177
Bsh1285I CGRYCG 1 cut(s) 51
BshFI GGCC 1 cut(s) 926
BsiEI CGRYCG 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 881, 1034
BslFI GGGAC 1 cut(s) 557
BsmAI GTCTC 2 cut(s) 907, 968
BsmFI GGGAC 1 cut(s) 557
BsmI GAATGC 2 cut(s) 300, 388
BsnI GGCC 1 cut(s) 926
BsoBI CYCGRG 1 cut(s) 272
Bsp13I TCCGGA 1 cut(s) 1033
Bsp143I GATC 6 cut(s) 48, 135, 268, 418, 496, 889
Bsp19I CCATGG 1 cut(s) 817
BspACI CCGC 5 cut(s) 32, 85, 106, 285, 290
BspANI GGCC 1 cut(s) 926
BspCNI CTCAG 3 cut(s) 115, 172, 211
BspEI TCCGGA 1 cut(s) 1033
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 4 cut(s) 143, 263, 276, 426
BsrFI RCCGGY 1 cut(s) 880
BsrI ACTGG 3 cut(s) 24, 927, 1045
BssAI RCCGGY 1 cut(s) 880
BssECI CCNNGG 2 cut(s) 581, 817
BssHII GCGCGC 1 cut(s) 175
BssMI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 2 cut(s) 581, 817
Bst2UI CCWGG 3 cut(s) 133, 599, 923
Bst4CI ACNGT 2 cut(s) 196, 1062
Bst6I CTCTTC 2 cut(s) 149, 372
BstACI GRCGYC 1 cut(s) 44
BstAPI GCANNNNNTGC 1 cut(s) 515
BstC8I GCNNGC 6 cut(s) 70, 110, 177, 314, 516, 915
BstDEI CTNAG 4 cut(s) 123, 180, 219, 332
BstDSI CCRYGG 1 cut(s) 817
BstF5I GGATG 6 cut(s) 75, 156, 379, 541, 963, 1030
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 4 cut(s) 11, 177, 179, 991
BstKTI GATC 6 cut(s) 51, 138, 271, 421, 499, 892
BstMAI GTCTC 2 cut(s) 907, 968
BstMBI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
BstMCI CGRYCG 1 cut(s) 51
BstMWI GCNNNNNNNGC 4 cut(s) 43, 515, 923, 932
BstNI CCWGG 3 cut(s) 133, 599, 923
BstNSI RCATGY 1 cut(s) 754
BstSCI CCNGG 3 cut(s) 131, 597, 921
BstSFI CTRYAG 2 cut(s) 61, 192
BstUI CGCG 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 21, 727
BstV2I GAAGAC 1 cut(s) 1069
BstX2I RGATCY 2 cut(s) 268, 418
BstXI CCANNNNNNTGG 1 cut(s) 1052
BstYI RGATCY 2 cut(s) 268, 418
BsuRI GGCC 1 cut(s) 926
BtgI CCRYGG 1 cut(s) 817
BtsCI GGATG 6 cut(s) 75, 156, 379, 541, 963, 1030
BtsIMutI CAGTG 3 cut(s) 120, 205, 934
Cac8I GCNNGC 6 cut(s) 70, 110, 177, 314, 516, 915
CfoI GCGC 4 cut(s) 11, 177, 179, 991
Cfr10I RCCGGY 1 cut(s) 880
Cfr13I GGNCC 1 cut(s) 287
CpoI CGGWCCG 1 cut(s) 287
CseI GACGC 3 cut(s) 52, 611, 1063
Csp6I GTAC 2 cut(s) 238, 723
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CspI CGGWCCG 1 cut(s) 287
CviAII CATG 3 cut(s) 751, 779, 818
CviQI GTAC 2 cut(s) 238, 723
DdeI CTNAG 4 cut(s) 123, 180, 219, 332
DpnI GATC 6 cut(s) 50, 137, 270, 420, 498, 891
DpnII GATC 6 cut(s) 48, 135, 268, 418, 496, 889
EaeI YGGCCR 1 cut(s) 924
Eam1104I CTCTTC 2 cut(s) 149, 372
EarI CTCTTC 2 cut(s) 149, 372
EciI GGCGGA 1 cut(s) 279
Eco130I CCWWGG 2 cut(s) 581, 817
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 2 cut(s) 540, 1031
Eco88I CYCGRG 1 cut(s) 272
EcoRII CCWGG 3 cut(s) 131, 597, 921
EcoT14I CCWWGG 2 cut(s) 581, 817
ErhI CCWWGG 2 cut(s) 581, 817
FaeI CATG 3 cut(s) 754, 782, 821
FaqI GGGAC 1 cut(s) 557
FatI CATG 3 cut(s) 750, 778, 817
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 35, 741
FokI GGATG 6 cut(s) 62, 143, 386, 548, 970, 1017
Fsp4HI GCNGC 2 cut(s) 35, 741
FspBI CTAG 3 cut(s) 551, 555, 941
FspI TGCGCA 1 cut(s) 990
GlaI GCGC 4 cut(s) 10, 176, 178, 990
GluI GCNGC 2 cut(s) 35, 741
GsaI CCCAGC 1 cut(s) 486
HaeIII GGCC 1 cut(s) 926
HapII CCGG 2 cut(s) 881, 1034
HgaI GACGC 3 cut(s) 52, 611, 1063
HhaI GCGC 4 cut(s) 11, 177, 179, 991
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 3 cut(s) 754, 782, 821
Hin6I GCGC 4 cut(s) 9, 175, 177, 989
HinP1I GCGC 4 cut(s) 9, 175, 177, 989
HincII GTYRAC 1 cut(s) 658
HindII GTYRAC 1 cut(s) 658
HinfI GANTC 4 cut(s) 53, 277, 460, 1004
HpaII CCGG 2 cut(s) 881, 1034
HphI GGTGA 2 cut(s) 403, 1036
Hpy166II GTNNAC 2 cut(s) 658, 725
Hpy188I TCNGA 4 cut(s) 16, 97, 244, 350
Hpy188III TCNNGA 6 cut(s) 169, 272, 320, 361, 973, 1034
Hpy8I GTNNAC 2 cut(s) 658, 725
Hpy99I CGWCG 2 cut(s) 46, 720
HpyAV CCTTC 7 cut(s) 171, 175, 259, 437, 765, 802, 947
HpyCH4III ACNGT 2 cut(s) 196, 1062
HpyCH4V TGCA 8 cut(s) 72, 300, 312, 386, 509, 701, 896, 935
HpyF10VI GCNNNNNNNGC 4 cut(s) 43, 515, 923, 932
HpyF3I CTNAG 4 cut(s) 123, 180, 219, 332
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 3 cut(s) 754, 782, 821
HspAI GCGC 4 cut(s) 9, 175, 177, 989
Kpn2I TCCGGA 1 cut(s) 1033
Kzo9I GATC 6 cut(s) 48, 135, 268, 418, 496, 889
LmnI GCTCC 2 cut(s) 211, 621
Lsp1109I GCAGC 2 cut(s) 21, 727
LweI GCATC 7 cut(s) 20, 178, 193, 237, 418, 922, 978
MaeI CTAG 3 cut(s) 551, 555, 941
MaeIII GTNAC 3 cut(s) 278, 708, 769
MalI GATC 6 cut(s) 50, 137, 270, 420, 498, 891
MboI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
MboII GAAGA 6 cut(s) 136, 274, 389, 449, 1024, 1069
MflI RGATCY 2 cut(s) 268, 418
MlsI TGGCCA 1 cut(s) 926
MluCI AATT 2 cut(s) 661, 862
MluNI TGGCCA 1 cut(s) 926
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 8 cut(s) 103, 152, 158, 247, 464, 585, 1030, 1049
Mox20I TGGCCA 1 cut(s) 926
MroI TCCGGA 1 cut(s) 1033
MscI TGGCCA 1 cut(s) 926
MseI TTAA 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 926
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 2 cut(s) 881, 1034
MspR9I CCNGG 3 cut(s) 133, 599, 923
Mva1269I GAATGC 2 cut(s) 300, 388
MvaI CCWGG 3 cut(s) 133, 599, 923
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 4 cut(s) 43, 515, 923, 932
NcoI CCATGG 1 cut(s) 817
NdeII GATC 6 cut(s) 48, 135, 268, 418, 496, 889
NlaIII CATG 3 cut(s) 754, 782, 821
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 2 cut(s) 278, 769
NsbI TGCGCA 1 cut(s) 990
NspI RCATGY 1 cut(s) 754
PauI GCGCGC 1 cut(s) 175
PctI GAATGC 2 cut(s) 300, 388
PfeI GAWTC 3 cut(s) 53, 460, 1004
PkrI GCNGC 2 cut(s) 36, 742
Ple19I CGATCG 1 cut(s) 51
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp6I CCWGG 3 cut(s) 131, 597, 921
PspFI CCCAGC 1 cut(s) 482
PspGI CCWGG 3 cut(s) 131, 597, 921
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 287
PsuI RGATCY 2 cut(s) 268, 418
PteI GCGCGC 1 cut(s) 175
PvuI CGATCG 1 cut(s) 51
RsaI GTAC 2 cut(s) 239, 724
RsaNI GTAC 2 cut(s) 238, 723
Rsr2I CGGWCCG 1 cut(s) 287
RsrII CGGWCCG 1 cut(s) 287
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 2 cut(s) 35, 741
Sau3AI GATC 6 cut(s) 48, 135, 268, 418, 496, 889
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 3 cut(s) 133, 599, 923
SfaNI GCATC 7 cut(s) 20, 178, 193, 237, 418, 922, 978
SfcI CTRYAG 2 cut(s) 61, 192
SinI GGWCC 1 cut(s) 287
SmlI CTYRAG 1 cut(s) 251
SmoI CTYRAG 1 cut(s) 251
Sse9I AATT 2 cut(s) 661, 862
SsiI CCGC 5 cut(s) 32, 85, 106, 285, 290
SspMI CTAG 3 cut(s) 551, 555, 941
StyD4I CCNGG 3 cut(s) 131, 597, 921
StyI CCWWGG 2 cut(s) 581, 817
TaaI ACNGT 2 cut(s) 196, 1062
TaqI TCGA 5 cut(s) 51, 56, 138, 577, 972
TasI AATT 2 cut(s) 661, 862
TfiI GAWTC 3 cut(s) 53, 460, 1004
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 3 cut(s) 127, 205, 934
TseFI GTSAC 2 cut(s) 278, 769
TseI GCWGC 2 cut(s) 34, 740
Tsp45I GTSAC 2 cut(s) 278, 769
TspDTI ATGAA 4 cut(s) 390, 456, 795, 1104
TspGWI ACGGA 1 cut(s) 704
TspRI CASTG 3 cut(s) 127, 205, 934
VpaK11BI GGWCC 1 cut(s) 287
XceI RCATGY 1 cut(s) 754
XspI CTAG 3 cut(s) 551, 555, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.