AT2G17340

BEST Arabidopsis thaliana protein match is Uncharacterised conserved protein (UCP030210) (TAIR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011219
Physical Location & Seq
Reverse (-)
7541313 .. 7544383
3071 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17340.1

Sequence Viewer

Length: 1104 bp
ATGGAGAGCGATTCAGAGATGGTTCCGTTTCCTCAACTACCGATGCCAATAGAAAACAACTACAGAGCTTGCACAATTCCTTACAGATTTCCTTCTGATGATCCCAAGAAAGCCACTCCAAATGAAATCTCGTGGATCAACGTCTTCGCCAATTCCATTCCTTCTTTCAAGAAACGTGCAGAGAGCGATATCACTGTTCCAGATGCTCCTGCTAGAGCTGAAAAATTTGCAGAAAGATATGCTGGGATTCTTGAAGACTTGAAGAAAGATCCAGAGAGTCATGGCGGACCACCAGATGGCATTCTTCTATGCCGACTTCGTGAGCAAGTACTCAGAGAGTTAGGATTTAGGGACATATTCAAGAAAGTTAAGGATGAGGAGAATGCAAAGGCTATATCACTATTTCCTCAAGTTGTCAGTCTGAGTGATGCTATTGAAGATGACGGAAAACGGTTAGAGAATTTGGTGAGAGGGATATTTGCTGGAAACATCTTTGATCTTGGTTCTGCACAGCTTGCTGAAGTTTTCTCAAGGGATGGTATGTCTTTCTTGGCTAGCTGTCAAAACTTGGTTCCACGACCATGGGTCATTGATGACTTGGAAAACTTCCAAGCCAAATGGATCAATAAGTCTTGGAAGAAGGCAGTGATTTTTGTTGATAATTCTGGTGCAGACATAATTTTGGGTATTTTGCCGTTTGCAAGAGAGTTGCTCCGTCGAGGAGCTCAGGTGGTGCTGGCTGCTAATGAGCTGCCATCTATCAATGACATAACATGTACCGAGCTTACAGAAATCTTGTCACAGTTGAAGGATGAAAATGGCCAATTGCTAGGTGTTGATACTTCGAAGCTTCTGATTGCAAATTCGGGGAATGACTTACCAGTTATCGATCTCTCAAGAGTATCACAGGAGCTTGCTTACCTTTCATCTGATGCCGACTTAGTCATCGTAGAAGGCATGGGTCGTGGAATTGAGACAAACCTTTATGCTCAGTTCAAGTGTGATTCTCTCAAGATTGGAATGGTGAAGCATCTTGAAGTAGCAGAGTTTCTCGGAGGACGGCTCTATGACTGTGTCTTCAAATTCAATGAAGTTCAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00770 ko01100 map00770 map01100
Pfam Domains
Protein Families
DUF89

Protein Analysis

367

Amino Acids

40.86

Weight (kDa)

4.79

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARMT1-like_dom PF01937 49 - 359 2.9e-65 Damage-control phosphatase ARMT1-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011219)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G17320 AT2G17320 AT2G17340 AT4G35360 AT4G35360
fragaria_vesca FvH4_2g16941 FvH4_2g16941
malus_domestica MD05G1141200.v1.1 MD10G1142600.v1.1
prunus_persica Prupe.8G181200_v2.0.a1
pyrus_communis pycom10g12250
rosa_chinensis RchiOBHm_Chr6g0281141
rosa_laevigata RLG00000012991
rosa_multiflora Rmu_sc0001705.1_g000019
rosa_roxburghii Rroxscaffold_7G00187260
rosa_rugosa Rorug06G0139200
rosa_samantha Rh6BG254200 Rh6CG253600 Rh6DG245600
rosa_wichuraiana Rw6G021790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 296
AciI CCGC 1 cut(s) 285
AclWI GGATC 4 cut(s) 95, 143, 263, 629
AcoI YGGCCR 1 cut(s) 820
AcsI RAATTY 4 cut(s) 224, 460, 862, 1082
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 2 cut(s) 330, 778
AfiI CCNNNNNNNGG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 773
AhdI GACNNNNNGTC 1 cut(s) 584
Alw21I GWGCWC 1 cut(s) 727
Alw26I GTCTC 1 cut(s) 968
AlwI GGATC 4 cut(s) 95, 143, 263, 629
AoxI GGCC 1 cut(s) 820
ApeKI GCWGC 2 cut(s) 740, 751
ApoI RAATTY 4 cut(s) 224, 460, 862, 1082
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 2 cut(s) 478, 1036
AsuII TTCGAA 1 cut(s) 845
AsuNHI GCTAGC 1 cut(s) 554
AvaII GGWCC 1 cut(s) 287
BalI TGGCCA 1 cut(s) 822
BanII GRGCYC 1 cut(s) 727
BauI CACGAG 1 cut(s) 130
BbsI GAAGAC 3 cut(s) 136, 261, 1069
Bbv12I GWGCWC 1 cut(s) 727
BbvI GCAGC 2 cut(s) 727, 738
BccI CCATC 4 cut(s) 13, 290, 530, 763
BceAI ACGGC 2 cut(s) 679, 1076
BcoDI GTCTC 1 cut(s) 968
BfaI CTAG 3 cut(s) 213, 555, 830
BfmI CTRYAG 1 cut(s) 61
BisI GCNGC 2 cut(s) 741, 752
BlsI GCNGC 2 cut(s) 742, 753
BmcAI AGTACT 1 cut(s) 330
Bme18I GGWCC 1 cut(s) 287
BmeRI GACNNNNNGTC 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 24, 573
BmsI GCATC 5 cut(s) 33, 193, 418, 922, 1039
BmtI GCTAGC 1 cut(s) 558
BpiI GAAGAC 3 cut(s) 136, 261, 1069
BplI GAGNNNNNCTC 4 cut(s) 696, 728, 1047, 1079
Bpu10I CCTNAGC 1 cut(s) 726
Bpu14I TTCGAA 1 cut(s) 845
BpuEI CTTGAG 4 cut(s) 393, 514, 880, 995
Bsa29I ATCGAT 1 cut(s) 888
BsaJI CCNNGG 1 cut(s) 581
BsaXI ACNNNNNCTCC 2 cut(s) 714, 744
Bsc4I CCNNNNNNNGG 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 881
BseCI ATCGAT 1 cut(s) 888
BseDI CCNNGG 1 cut(s) 581
BseGI GGATG 3 cut(s) 379, 541, 817
BseLI CCNNNNNNNGG 1 cut(s) 296
BseMII CTCAG 4 cut(s) 346, 413, 740, 1004
BseNI ACTGG 1 cut(s) 881
BseRI GAGGAG 2 cut(s) 392, 735
BseXI GCAGC 2 cut(s) 727, 738
BseYI CCCAGC 1 cut(s) 242
BsgI GTGCAG 3 cut(s) 198, 492, 690
BshFI GGCC 1 cut(s) 822
BshVI ATCGAT 1 cut(s) 888
BsiHKAI GWGCWC 1 cut(s) 727
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 296
BsmAI GTCTC 1 cut(s) 968
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 2 cut(s) 300, 388
BsnI GGCC 1 cut(s) 822
Bsp119I TTCGAA 1 cut(s) 845
Bsp1286I GDGCHC 1 cut(s) 727
Bsp143I GATC 6 cut(s) 100, 135, 268, 496, 621, 889
Bsp19I CCATGG 1 cut(s) 581
BspACI CCGC 1 cut(s) 285
BspANI GGCC 1 cut(s) 822
BspCNI CTCAG 4 cut(s) 345, 414, 739, 1003
BspDI ATCGAT 1 cut(s) 888
BspLI GGNNCC 2 cut(s) 24, 573
BspOI GCTAGC 1 cut(s) 558
BspPI GGATC 4 cut(s) 95, 143, 263, 629
BspT104I TTCGAA 1 cut(s) 845
BsrI ACTGG 1 cut(s) 881
BssECI CCNNGG 1 cut(s) 581
BssMI GATC 6 cut(s) 100, 135, 268, 496, 621, 889
BssSI CACGAG 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 130
Bst4CI ACNGT 4 cut(s) 196, 453, 804, 1073
BstAPI GCANNNNNTGC 1 cut(s) 515
BstBI TTCGAA 1 cut(s) 845
BstC8I GCNNGC 5 cut(s) 70, 516, 556, 738, 915
BstDEI CTNAG 5 cut(s) 332, 422, 726, 940, 990
BstDSI CCRYGG 1 cut(s) 581
BstF5I GGATG 3 cut(s) 379, 541, 817
BstKTI GATC 6 cut(s) 103, 138, 271, 499, 624, 892
BstMAI GTCTC 1 cut(s) 968
BstMBI GATC 6 cut(s) 100, 135, 268, 496, 621, 889
BstMWI GCNNNNNNNGC 1 cut(s) 515
BstNSI RCATGY 1 cut(s) 777
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 727, 738
BstV2I GAAGAC 3 cut(s) 136, 261, 1069
BstX2I RGATCY 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 582
BstYI RGATCY 1 cut(s) 268
Bsu15I ATCGAT 1 cut(s) 888
BsuRI GGCC 1 cut(s) 822
BsuTUI ATCGAT 1 cut(s) 888
BtgI CCRYGG 1 cut(s) 581
BtsCI GGATG 3 cut(s) 379, 541, 817
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 192, 651
Cac8I GCNNGC 5 cut(s) 70, 516, 556, 738, 915
Cfr13I GGNCC 1 cut(s) 287
ClaI ATCGAT 1 cut(s) 888
Csp6I GTAC 2 cut(s) 329, 777
CviAII CATG 4 cut(s) 281, 582, 774, 958
CviQI GTAC 2 cut(s) 329, 777
DdeI CTNAG 5 cut(s) 332, 422, 726, 940, 990
DpnI GATC 6 cut(s) 102, 137, 270, 498, 623, 891
DpnII GATC 6 cut(s) 100, 135, 268, 496, 621, 889
DriI GACNNNNNGTC 1 cut(s) 584
EaeI YGGCCR 1 cut(s) 820
Eam1105I GACNNNNNGTC 1 cut(s) 584
EciI GGCGGA 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 725
Eco130I CCWWGG 1 cut(s) 581
Eco24I GRGCYC 1 cut(s) 727
Eco32I GATATC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 287
Eco53kI GAGCTC 1 cut(s) 725
Eco57I CTGAAG 1 cut(s) 540
EcoICRI GAGCTC 1 cut(s) 725
EcoRV GATATC 1 cut(s) 190
EcoT14I CCWWGG 1 cut(s) 581
EcoT38I GRGCYC 1 cut(s) 727
ErhI CCWWGG 1 cut(s) 581
FaeI CATG 4 cut(s) 284, 585, 777, 961
FaqI GGGAC 1 cut(s) 365
FatI CATG 4 cut(s) 280, 581, 773, 957
Fnu4HI GCNGC 2 cut(s) 741, 752
FokI GGATG 3 cut(s) 386, 548, 824
FriOI GRGCYC 1 cut(s) 727
Fsp4HI GCNGC 2 cut(s) 741, 752
FspBI CTAG 3 cut(s) 213, 555, 830
GluI GCNGC 2 cut(s) 741, 752
GsaI CCCAGC 1 cut(s) 246
HaeIII GGCC 1 cut(s) 822
Hin1II CATG 4 cut(s) 284, 585, 777, 961
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 4 cut(s) 11, 247, 277, 1004
HphI GGTGA 2 cut(s) 478, 1036
Hpy188I TCNGA 8 cut(s) 16, 97, 335, 423, 855, 931, 1055, 1098
Hpy188III TCNNGA 9 cut(s) 169, 200, 251, 272, 320, 361, 897, 1012, 1034
Hpy99I CGWCG 1 cut(s) 720
HpyAV CCTTC 5 cut(s) 102, 171, 634, 802, 947
HpyCH4III ACNGT 4 cut(s) 196, 453, 804, 1073
HpyCH4IV ACGT 2 cut(s) 141, 175
HpyCH4V TGCA 8 cut(s) 72, 179, 230, 386, 509, 671, 701, 860
HpyF10VI GCNNNNNNNGC 1 cut(s) 515
HpyF3I CTNAG 5 cut(s) 332, 422, 726, 940, 990
HpySE526I ACGT 2 cut(s) 141, 175
Hsp92II CATG 4 cut(s) 284, 585, 777, 961
Kzo9I GATC 6 cut(s) 100, 135, 268, 496, 621, 889
LmnI GCTCC 4 cut(s) 211, 717, 722, 910
Lsp1109I GCAGC 2 cut(s) 727, 738
LweI GCATC 5 cut(s) 33, 193, 418, 922, 1039
MaeI CTAG 3 cut(s) 213, 555, 830
MaeII ACGT 2 cut(s) 141, 175
MaeIII GTNAC 1 cut(s) 798
MalI GATC 6 cut(s) 102, 137, 270, 498, 623, 891
MboI GATC 6 cut(s) 100, 135, 268, 496, 621, 889
MboII GAAGA 7 cut(s) 136, 266, 274, 296, 449, 649, 1069
MfeI CAATTG 1 cut(s) 824
MflI RGATCY 1 cut(s) 268
MhlI GDGCHC 1 cut(s) 727
MlsI TGGCCA 1 cut(s) 822
MluNI TGGCCA 1 cut(s) 822
MlyI GAGTC 1 cut(s) 286
MnlI CCTC 6 cut(s) 42, 370, 417, 464, 713, 1049
Mox20I TGGCCA 1 cut(s) 822
MscI TGGCCA 1 cut(s) 822
MseI TTAA 1 cut(s) 369
MslI CAYNNNNRTG 1 cut(s) 580
Msp20I TGGCCA 1 cut(s) 822
MunI CAATTG 1 cut(s) 824
Mva1269I GAATGC 2 cut(s) 300, 388
MwoI GCNNNNNNNGC 1 cut(s) 515
NcoI CCATGG 1 cut(s) 581
NdeII GATC 6 cut(s) 100, 135, 268, 496, 621, 889
NheI GCTAGC 1 cut(s) 554
NlaIII CATG 4 cut(s) 284, 585, 777, 961
NlaIV GGNNCC 2 cut(s) 24, 573
NmuCI GTSAC 1 cut(s) 798
NspI RCATGY 1 cut(s) 777
NspV TTCGAA 1 cut(s) 845
PciI ACATGT 1 cut(s) 773
PctI GAATGC 2 cut(s) 300, 388
PfeI GAWTC 3 cut(s) 11, 247, 1004
PflFI GACNNNGTC 2 cut(s) 941, 1073
PflMI CCANNNNNTGG 1 cut(s) 296
PkrI GCNGC 2 cut(s) 742, 753
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
PscI ACATGT 1 cut(s) 773
Psp124BI GAGCTC 1 cut(s) 727
PspFI CCCAGC 1 cut(s) 242
PspN4I GGNNCC 2 cut(s) 24, 573
PspPI GGNCC 1 cut(s) 287
PsuI RGATCY 1 cut(s) 268
PsyI GACNNNGTC 2 cut(s) 941, 1073
RsaI GTAC 2 cut(s) 330, 778
RsaNI GTAC 2 cut(s) 329, 777
RseI CAYNNNNRTG 1 cut(s) 580
SacI GAGCTC 1 cut(s) 727
SaqAI TTAA 1 cut(s) 369
SatI GCNGC 2 cut(s) 741, 752
Sau3AI GATC 6 cut(s) 100, 135, 268, 496, 621, 889
Sau96I GGNCC 1 cut(s) 287
ScaI AGTACT 1 cut(s) 330
SchI GAGTC 1 cut(s) 286
SduI GDGCHC 1 cut(s) 727
SfaNI GCATC 5 cut(s) 33, 193, 418, 922, 1039
SfcI CTRYAG 1 cut(s) 61
SfuI TTCGAA 1 cut(s) 845
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 580
SmlI CTYRAG 4 cut(s) 408, 529, 895, 1010
SmoI CTYRAG 4 cut(s) 408, 529, 895, 1010
SsiI CCGC 1 cut(s) 285
SspMI CTAG 3 cut(s) 213, 555, 830
SstI GAGCTC 1 cut(s) 727
StyI CCWWGG 1 cut(s) 581
TaaI ACNGT 4 cut(s) 196, 453, 804, 1073
TaiI ACGT 2 cut(s) 144, 178
TaqI TCGA 3 cut(s) 718, 845, 888
TatI WGTACW 1 cut(s) 328
TfiI GAWTC 3 cut(s) 11, 247, 1004
Tru1I TTAA 1 cut(s) 369
Tru9I TTAA 1 cut(s) 369
TscAI CASTG 2 cut(s) 199, 651
TseFI GTSAC 1 cut(s) 798
TseI GCWGC 2 cut(s) 740, 751
Tsp45I GTSAC 1 cut(s) 798
TspDTI ATGAA 4 cut(s) 138, 828, 915, 1104
TspGWI ACGGA 3 cut(s) 15, 459, 704
TspRI CASTG 2 cut(s) 199, 651
Tth111I GACNNNGTC 2 cut(s) 941, 1073
Van91I CCANNNNNTGG 1 cut(s) 296
VpaK11BI GGWCC 1 cut(s) 287
XapI RAATTY 4 cut(s) 224, 460, 862, 1082
XceI RCATGY 1 cut(s) 777
XspI CTAG 3 cut(s) 213, 555, 830
ZrmI AGTACT 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.