AT2G17480

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
7590295 .. 7594195
3901 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G17480.1

Sequence Viewer

Length: 1782 bp
ATGGGAATCATCGACGGTTCTTTGCTTCGGCGGTTGATTTGTCTCTGTCTCTGGTGTCTTCTCGGTGGAGGAGTGACGGTGGTTACGGCGGAGGATGAGAAGAAAGTGGTACATAAACAGCTTAATCAAACTCCGACTTGGGCTGTTGCTGCTGTTTGTACTTTCTTCATCGTTGTTTCTGTTCTTCTTGAAAAACTTCTTCACAAAGTTGGAAAGGTTCTATGGGATCGGCACAAGACAGCTCTTCTTGACGCTTTGGAGAAGATCAAAGCAGAGCTGATGGTTCTTGGATTCATCTCTTTGCTTCTGACATTTGGACAAACCTACATTTTGGATATTTGTATCCCTTCACATGTTGCTCGTACGATGCTCCCGTGTCCTGCTCCTAACTTGAAAAAGGAGGATGATGACAATGGTGAAAGTCACAGGAGACTCTTGTCGTTTGAGCACAGATTTTTATCTGGAGGTGAAGCATCTCCCACTAAATGCACGAAGGAGGGTTATGTAGAGCTTATCTCTGCCGAGGCACTCCATCAGTTGCACATCCTTATATTCTTCTTAGCCATTTTCCACGTTCTTTACAGCTTCTTAACTATGATGCTTGGAAGGTTGAAGATTCGCGGATGGAAGCATTGGGAGAATGAGACATCATCCCATAATTACGAGTTTTCAACAGACACTTCCAGATTCAGGCTAACTCATGAAACATCTTTTGTGAGAGCGCACACCAGTTTCTGGACCCGGATTCCATTCTTTTTCTATGTTGGATGCTTTTTCAGACAGTTTTTCAGATCCGTTGGGAGAACTGACTATTTGACATTGAGAAATGGTTTCATCGCTGTTCATTTAGCTCCAGGAAGTCAATTTAACTTCCAAAAATACATTAAAAGATCGTTGGAGGATGATTTCAAGGTAGTCGTTGGAGTCAGCCCTGTCTTGTGGGGATCTTTTGTGCTATTCCTCCTCCTAAATATTGACGGCTTCAAGATGATGTTCATCGGCACTGCAATACCGGTTATTATCATTTTAGCTGTAGGGACAAAGCTTCAAGCGATTATGACAAGGATGGCTCTTGGTATCACAGATAGACATGCGGTAGTTCAAGGAATGCCGCTTGTACAAGGCAACGATGAGTATTTCTGGTTCGGTCGTCCCCATTTGATTCTCCATCTCATGCATTTCGCCTTGTTTCAGAACGCATTTCAGATCACTTATTTCTTCTGGATATGGTATTCCTTTGGATCAGATTCTTGCTACCATCCTAATTTCAAGATTGCACTTGTAAAAGTAGCGATTGCTTTAGGAGTATTGTGTCTTTGCAGCTACATCACACTTCCTCTTTACGCACTCGTAACTCAGATGGGTTCTCGGATGAAAAAATCGGTATTCGATGAACAAACGTCAAAAGCACTCAAGAAATGGAGAATGGCAGTGAAGAAGAAGAAAGGTGTGAAAGCCACTACTAAGAGACTAGGTGGAGATGGAAGTGCGAGCCCTACGGCATCGACAGTTAGGTCTACTTCGTCTGTACGTTCATTGCAGCGTTACAAAACCACACCACATTCGATGAGATACGAAGGACTTGACCCTGAAACATCGGATCTCGACACAGATAATGAAGCTTTGACTCCTCCCAAATCTCCTCCAAGCTTCGAGCTTGTTGTGAAAGTTGAACCAAATAAGACCAATACCGGTGAGACTAGCCGTGACACTGAAACTGATTCTAAAGAGTTCTCTTTCGTCAAGCCTGCTCCGAGTAATGAATCATCTCAAGACCGGTGA

Protein Analysis

593

Amino Acids

67.21

Weight (kDa)

9.24

Isoelectric Point (pI)

36.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 39 - 516 1.7e-212 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1513
AccB7I CCANNNNNTGG 1 cut(s) 735
AccI GTMKAC 1 cut(s) 1517
AccII CGCG 1 cut(s) 621
AciI CCGC 5 cut(s) 31, 89, 621, 1094, 1112
AclWI GGATC 5 cut(s) 234, 786, 952, 1249, 1608
AfaI GTAC 5 cut(s) 111, 160, 364, 1119, 1530
AfiI CCNNNNNNNGG 2 cut(s) 690, 735
AflIII ACRYGT 1 cut(s) 352
AgeI ACCGGT 3 cut(s) 1012, 1691, 1776
AjnI CCWGG 1 cut(s) 853
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 6 cut(s) 47, 53, 424, 638, 1462, 1691
AlwI GGATC 5 cut(s) 234, 786, 952, 1249, 1608
AlwNI CAGNNNCTG 1 cut(s) 735
ApeKI GCWGC 3 cut(s) 149, 1320, 1540
AsiGI ACCGGT 3 cut(s) 1012, 1691, 1776
Asp700I GAANNNNTTC 1 cut(s) 195
AspLEI GCGC 1 cut(s) 724
AspS9I GGNCC 1 cut(s) 738
AsuC2I CCSGG 1 cut(s) 742
AsuHPI GGTGA 3 cut(s) 428, 479, 1706
AvaII GGWCC 1 cut(s) 738
BanII GRGCYC 1 cut(s) 1496
BbsI GAAGAC 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 3 cut(s) 136, 1332, 1552
BccI CCATC 8 cut(s) 274, 540, 618, 1060, 1176, 1266, 1354, 1475
BceAI ACGGC 4 cut(s) 102, 994, 1515, 1689
BciT130I CCWGG 1 cut(s) 855
BciVI GTATCC 1 cut(s) 353
BcnI CCSGG 1 cut(s) 742
BcoDI GTCTC 6 cut(s) 47, 53, 424, 638, 1462, 1691
BfaI CTAG 2 cut(s) 1472, 1701
BfmI CTRYAG 1 cut(s) 1032
BfuI GTATCC 1 cut(s) 353
BisI GCNGC 4 cut(s) 150, 1112, 1321, 1541
BlsI GCNGC 4 cut(s) 151, 1113, 1322, 1542
Bme1390I CCNGG 2 cut(s) 742, 855
Bme18I GGWCC 1 cut(s) 738
BmgT120I GGNCC 1 cut(s) 738
BmiI GGNNCC 1 cut(s) 740
BmrFI CCNGG 2 cut(s) 742, 855
BmsI GCATC 5 cut(s) 357, 482, 588, 758, 1511
BoxI GACNNNNGTC 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 500, 532
BpmI CTGGAG 2 cut(s) 483, 837
BpuEI CTTGAG 2 cut(s) 1397, 1755
BpuMI CCSGG 1 cut(s) 742
BsaBI GATNNNNATC 2 cut(s) 457, 995
BsaJI CCNNGG 1 cut(s) 522
BsaWI WCCGGW 3 cut(s) 1012, 1691, 1776
BsaXI ACNNNNNCTCC 2 cut(s) 63, 93
Bsc4I CCNNNNNNNGG 2 cut(s) 690, 735
Bse118I RCCGGY 3 cut(s) 1012, 1691, 1776
Bse1I ACTGG 1 cut(s) 729
Bse3DI GCAATG 1 cut(s) 1535
Bse8I GATNNNNATC 2 cut(s) 457, 995
BseBI CCWGG 1 cut(s) 855
BseDI CCNNGG 1 cut(s) 522
BseJI GATNNNNATC 2 cut(s) 457, 995
BseLI CCNNNNNNNGG 2 cut(s) 690, 735
BseMI GCAATG 1 cut(s) 1535
BseMII CTCAG 1 cut(s) 1370
BseNI ACTGG 1 cut(s) 729
BseRI GAGGAG 4 cut(s) 84, 953, 1620, 1632
BseXI GCAGC 3 cut(s) 136, 1332, 1552
Bsh1236I CGCG 1 cut(s) 621
Bsh1285I CGRYCG 1 cut(s) 1150
BshTI ACCGGT 3 cut(s) 1012, 1691, 1776
BsiEI CGRYCG 1 cut(s) 1150
BsiHKAI GWGCWC 1 cut(s) 450
BsiSI CCGG 4 cut(s) 742, 1013, 1692, 1777
BsiWI CGTACG 1 cut(s) 362
BslFI GGGAC 2 cut(s) 1051, 1137
BslI CCNNNNNNNGG 2 cut(s) 690, 735
BsmAI GTCTC 6 cut(s) 47, 53, 424, 638, 1462, 1691
BsmFI GGGAC 2 cut(s) 1051, 1137
BsmI GAATGC 1 cut(s) 1113
Bsp1286I GDGCHC 2 cut(s) 450, 1496
Bsp1407I TGTACA 1 cut(s) 1117
Bsp143I GATC 8 cut(s) 226, 264, 791, 890, 944, 1206, 1241, 1600
BspACI CCGC 5 cut(s) 31, 89, 621, 1094, 1112
BspCNI CTCAG 1 cut(s) 1369
BspFNI CGCG 1 cut(s) 621
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 1 cut(s) 740
BspPI GGATC 5 cut(s) 234, 786, 952, 1249, 1608
BspQI GCTCTTC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 1535
BsrFI RCCGGY 3 cut(s) 1012, 1691, 1776
BsrGI TGTACA 1 cut(s) 1117
BsrI ACTGG 1 cut(s) 729
BssAI RCCGGY 3 cut(s) 1012, 1691, 1776
BssECI CCNNGG 1 cut(s) 522
BssMI GATC 8 cut(s) 226, 264, 791, 890, 944, 1206, 1241, 1600
Bst2UI CCWGG 1 cut(s) 855
Bst4CI ACNGT 4 cut(s) 17, 79, 783, 1510
Bst6I CTCTTC 1 cut(s) 249
BstAUI TGTACA 1 cut(s) 1117
BstC8I GCNNGC 2 cut(s) 1492, 1749
BstDEI CTNAG 3 cut(s) 559, 1356, 1464
BstFNI CGCG 1 cut(s) 621
BstHHI GCGC 1 cut(s) 724
BstKTI GATC 8 cut(s) 229, 267, 794, 893, 947, 1209, 1244, 1603
BstMAI GTCTC 6 cut(s) 47, 53, 424, 638, 1462, 1691
BstMBI GATC 8 cut(s) 226, 264, 791, 890, 944, 1206, 1241, 1600
BstMCI CGRYCG 1 cut(s) 1150
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 855
BstNSI RCATGY 2 cut(s) 356, 1094
BstPAI GACNNNNGTC 1 cut(s) 436
BstSCI CCNGG 2 cut(s) 740, 853
BstSFI CTRYAG 1 cut(s) 1032
BstUI CGCG 1 cut(s) 621
BstV1I GCAGC 3 cut(s) 136, 1332, 1552
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 3 cut(s) 791, 944, 1600
BstYI RGATCY 3 cut(s) 791, 944, 1600
BsuI GTATCC 1 cut(s) 353
BtgZI GCGATG 1 cut(s) 820
BtsI GCAGTG 2 cut(s) 1002, 1437
BtsIMutI CAGTG 3 cut(s) 1002, 1437, 1710
Cac8I GCNNGC 2 cut(s) 1492, 1749
CaiI CAGNNNCTG 1 cut(s) 735
CciI TCATGA 1 cut(s) 700
CfoI GCGC 1 cut(s) 724
Cfr10I RCCGGY 3 cut(s) 1012, 1691, 1776
Cfr13I GGNCC 1 cut(s) 738
CseI GACGC 1 cut(s) 260
Csp6I GTAC 5 cut(s) 110, 159, 363, 1118, 1529
CspAI ACCGGT 3 cut(s) 1012, 1691, 1776
CviAII CATG 4 cut(s) 353, 701, 1091, 1174
CviQI GTAC 5 cut(s) 110, 159, 363, 1118, 1529
DdeI CTNAG 3 cut(s) 559, 1356, 1464
DpnI GATC 8 cut(s) 228, 266, 793, 892, 946, 1208, 1243, 1602
DpnII GATC 8 cut(s) 226, 264, 791, 890, 944, 1206, 1241, 1600
DrdI GACNNNNNNGTC 1 cut(s) 1513
DseDI GACNNNNNNGTC 1 cut(s) 1513
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
EciI GGCGGA 1 cut(s) 104
Eco24I GRGCYC 1 cut(s) 1496
Eco47I GGWCC 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 853
EcoT22I ATGCAT 1 cut(s) 1179
EcoT38I GRGCYC 1 cut(s) 1496
FaeI CATG 4 cut(s) 356, 704, 1094, 1177
FaqI GGGAC 2 cut(s) 1051, 1137
FatI CATG 4 cut(s) 352, 700, 1090, 1173
FblI GTMKAC 1 cut(s) 1517
Fnu4HI GCNGC 4 cut(s) 150, 1112, 1321, 1541
FriOI GRGCYC 1 cut(s) 1496
Fsp4HI GCNGC 4 cut(s) 150, 1112, 1321, 1541
FspBI CTAG 2 cut(s) 1472, 1701
GlaI GCGC 1 cut(s) 723
GluI GCNGC 4 cut(s) 150, 1112, 1321, 1541
GsuI CTGGAG 2 cut(s) 483, 837
HapII CCGG 4 cut(s) 742, 1013, 1692, 1777
HgaI GACGC 1 cut(s) 260
HhaI GCGC 1 cut(s) 724
Hin1II CATG 4 cut(s) 356, 704, 1094, 1177
Hin6I GCGC 1 cut(s) 722
HinP1I GCGC 1 cut(s) 722
HindIII AAGCTT 3 cut(s) 1043, 1620, 1648
HpaII CCGG 4 cut(s) 742, 1013, 1692, 1777
HphI GGTGA 3 cut(s) 428, 479, 1706
Hpy166II GTNNAC 1 cut(s) 1518
Hpy8I GTNNAC 1 cut(s) 1518
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 4 cut(s) 357, 487, 600, 1571
HpyCH4III ACNGT 4 cut(s) 17, 79, 783, 1510
HpyCH4IV ACGT 3 cut(s) 573, 1400, 1531
HpyCH4V TGCA 7 cut(s) 489, 541, 1007, 1177, 1277, 1320, 1540
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 3 cut(s) 559, 1356, 1464
HpySE526I ACGT 3 cut(s) 573, 1400, 1531
Hsp92II CATG 4 cut(s) 356, 704, 1094, 1177
HspAI GCGC 1 cut(s) 722
Kzo9I GATC 8 cut(s) 226, 264, 791, 890, 944, 1206, 1241, 1600
LguI GCTCTTC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 375, 388, 856, 1756
Lsp1109I GCAGC 3 cut(s) 136, 1332, 1552
LweI GCATC 5 cut(s) 357, 482, 588, 758, 1511
MaeI CTAG 2 cut(s) 1472, 1701
MaeII ACGT 3 cut(s) 573, 1400, 1531
MaeIII GTNAC 6 cut(s) 73, 82, 422, 1351, 1544, 1706
MalI GATC 8 cut(s) 228, 266, 793, 892, 946, 1208, 1243, 1602
MboI GATC 8 cut(s) 226, 264, 791, 890, 944, 1206, 1241, 1600
MflI RGATCY 3 cut(s) 791, 944, 1600
MhlI GDGCHC 2 cut(s) 450, 1496
MluCI AATT 3 cut(s) 658, 863, 1264
MlyI GAGTC 3 cut(s) 426, 933, 1621
MmeI TCCRAC 5 cut(s) 158, 190, 745, 876, 901
Mph1103I ATGCAT 1 cut(s) 1179
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 4 cut(s) 123, 590, 867, 885
MspI CCGG 4 cut(s) 742, 1013, 1692, 1777
MspR9I CCNGG 2 cut(s) 742, 855
Mva1269I GAATGC 1 cut(s) 1113
MvaI CCWGG 1 cut(s) 855
MvnI CGCG 1 cut(s) 621
MwoI GCNNNNNNNGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 742
NdeII GATC 8 cut(s) 226, 264, 791, 890, 944, 1206, 1241, 1600
NlaIII CATG 4 cut(s) 356, 704, 1094, 1177
NlaIV GGNNCC 1 cut(s) 740
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 3 cut(s) 73, 422, 1706
NsiI ATGCAT 1 cut(s) 1179
NspI RCATGY 2 cut(s) 356, 1094
PagI TCATGA 1 cut(s) 700
PciI ACATGT 1 cut(s) 352
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 371
PctI GAATGC 1 cut(s) 1113
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 9 cut(s) 6, 291, 616, 687, 745, 1162, 1247, 1721, 1763
Pfl23II CGTACG 1 cut(s) 362
PflMI CCANNNNNTGG 1 cut(s) 735
PfoI TCCNGGA 1 cut(s) 853
PinAI ACCGGT 3 cut(s) 1012, 1691, 1776
PkrI GCNGC 4 cut(s) 151, 1113, 1322, 1542
PleI GAGTC 3 cut(s) 426, 932, 1621
PpsI GAGTC 3 cut(s) 426, 932, 1621
PscI ACATGT 1 cut(s) 352
PshAI GACNNNNGTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 853
PspGI CCWGG 1 cut(s) 853
PspLI CGTACG 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 740
PspPI GGNCC 1 cut(s) 738
PsrI GAACNNNNNNTAC 2 cut(s) 1127, 1159
PstNI CAGNNNCTG 1 cut(s) 735
PsuI RGATCY 3 cut(s) 791, 944, 1600
RsaI GTAC 5 cut(s) 111, 160, 364, 1119, 1530
RsaNI GTAC 5 cut(s) 110, 159, 363, 1118, 1529
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 123, 590, 867, 885
SatI GCNGC 4 cut(s) 150, 1112, 1321, 1541
Sau3AI GATC 8 cut(s) 226, 264, 791, 890, 944, 1206, 1241, 1600
Sau96I GGNCC 1 cut(s) 738
SchI GAGTC 3 cut(s) 426, 933, 1621
ScrFI CCNGG 2 cut(s) 742, 855
SduI GDGCHC 2 cut(s) 450, 1496
SfaNI GCATC 5 cut(s) 357, 482, 588, 758, 1511
SfcI CTRYAG 1 cut(s) 1032
SinI GGWCC 1 cut(s) 738
SmlI CTYRAG 2 cut(s) 1412, 1770
SmoI CTYRAG 2 cut(s) 1412, 1770
Sse9I AATT 3 cut(s) 658, 863, 1264
SsiI CCGC 5 cut(s) 31, 89, 621, 1094, 1112
SspI AATATT 1 cut(s) 973
SspMI CTAG 2 cut(s) 1472, 1701
StyD4I CCNGG 2 cut(s) 740, 853
TaaI ACNGT 4 cut(s) 17, 79, 783, 1510
TaiI ACGT 3 cut(s) 576, 1403, 1534
TaqI TCGA 6 cut(s) 12, 1389, 1505, 1565, 1605, 1653
TaqII GACCGA 1 cut(s) 1136
TasI AATT 3 cut(s) 658, 863, 1264
TatI WGTACW 2 cut(s) 158, 1117
TauI GCSGC 1 cut(s) 1114
TfiI GAWTC 9 cut(s) 6, 291, 616, 687, 745, 1162, 1247, 1721, 1763
Tru1I TTAA 4 cut(s) 123, 590, 867, 885
Tru9I TTAA 4 cut(s) 123, 590, 867, 885
TscAI CASTG 3 cut(s) 1009, 1437, 1717
TseFI GTSAC 3 cut(s) 73, 422, 1706
TseI GCWGC 3 cut(s) 149, 1320, 1540
Tsp45I GTSAC 3 cut(s) 73, 422, 1706
TspGWI ACGGA 1 cut(s) 784
TspRI CASTG 3 cut(s) 1009, 1437, 1717
Van91I CCANNNNNTGG 1 cut(s) 735
VpaK11BI GGWCC 1 cut(s) 738
XceI RCATGY 2 cut(s) 356, 1094
XmiI GTMKAC 1 cut(s) 1517
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 1472, 1701
Zsp2I ATGCAT 1 cut(s) 1179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.