Rorug02G0061900

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0005266
Physical Location & Seq
Forward (+)
4834451 .. 4834875
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0061900.1

Sequence Viewer

Length: 339 bp
ATGACCTCTGCTATGGGATATGAAGACAAAGAGAGCAAGAATCAGGCAGCCAATATCGTCATAAGAGAGTATAAAGAGATCCTATACGAGGCTGAGGAGTTTGAGGAAAGTAAAAGGGACAGACAACAAATATATAACGACGCACTCGCTATATATCATGTTTGTTATGACTATGCCAGGAGTGTGAGGACTGAAACTGGGGCACAAGATGTCCGGAAATGTGGCTTTGTTTGGAAAGTTGCAGGTGCAGCTCTATGCCAGCTTCATGAGGACCGGAGTTTGAAACCTGGTGAAAAGGTTTTCAGGATCTTACCCTCTGTTTTGAAGGACATTATGTAG

Protein Analysis

112

Amino Acids

12.97

Weight (kDa)

5.72

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RdRP_head PF26253 8 - 91 3.6e-15 RdRP, head domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 233
AccIII TCCGGA 1 cut(s) 213
AclWI GGATC 2 cut(s) 73, 314
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 2 cut(s) 283, 325
AjnI CCWGG 2 cut(s) 176, 286
AluBI AGCT 2 cut(s) 251, 262
AluI AGCT 2 cut(s) 251, 262
AlwI GGATC 2 cut(s) 73, 314
Aor13HI TCCGGA 1 cut(s) 213
ApeKI GCWGC 2 cut(s) 47, 248
AspS9I GGNCC 1 cut(s) 271
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 30
BbvCI CCTCAGC 1 cut(s) 93
BbvI GCAGC 2 cut(s) 59, 260
BciT130I CCWGG 2 cut(s) 178, 288
BfuAI ACCTGC 1 cut(s) 233
BisI GCNGC 2 cut(s) 48, 249
BlsI GCNGC 2 cut(s) 49, 250
Bme1390I CCNGG 2 cut(s) 178, 288
Bme18I GGWCC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 271
BmrFI CCNGG 2 cut(s) 178, 288
BmrI ACTGGG 1 cut(s) 207
BmuI ACTGGG 1 cut(s) 207
BpiI GAAGAC 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 93
BsaWI WCCGGW 2 cut(s) 213, 273
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 213
BseBI CCWGG 2 cut(s) 178, 288
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 202
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 2 cut(s) 59, 260
BsgI GTGCAG 1 cut(s) 267
BsiSI CCGG 2 cut(s) 214, 274
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 88
BsmFI GGGAC 1 cut(s) 131
Bsp1286I GDGCHC 1 cut(s) 205
Bsp13I TCCGGA 1 cut(s) 213
Bsp143I GATC 2 cut(s) 78, 306
BspCNI CTCAG 1 cut(s) 85
BspEI TCCGGA 1 cut(s) 213
BspHI TCATGA 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 233
BspPI GGATC 2 cut(s) 73, 314
BsrI ACTGG 1 cut(s) 202
BssMI GATC 2 cut(s) 78, 306
Bst2UI CCWGG 2 cut(s) 178, 288
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 93
BstENI CCTNNNNNAGG 1 cut(s) 86
BstKTI GATC 2 cut(s) 81, 309
BstMBI GATC 2 cut(s) 78, 306
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 2 cut(s) 178, 288
BstSCI CCNGG 2 cut(s) 176, 286
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 59, 260
BstV2I GAAGAC 1 cut(s) 30
BstX2I RGATCY 2 cut(s) 78, 306
BstYI RGATCY 2 cut(s) 78, 306
BveI ACCTGC 1 cut(s) 233
Cac8I GCNNGC 1 cut(s) 260
CciI TCATGA 1 cut(s) 265
Cfr13I GGNCC 1 cut(s) 271
CseI GACGC 1 cut(s) 149
CsiI ACCWGGT 1 cut(s) 286
CviAII CATG 2 cut(s) 158, 266
CviJI RGCY 5 cut(s) 50, 92, 225, 251, 262
CviKI_1 RGCY 5 cut(s) 50, 92, 225, 251, 262
DdeI CTNAG 1 cut(s) 93
DpnI GATC 2 cut(s) 80, 308
DpnII GATC 2 cut(s) 78, 306
Eco47I GGWCC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRII CCWGG 2 cut(s) 176, 286
FaeI CATG 2 cut(s) 161, 269
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 157, 265
Fnu4HI GCNGC 2 cut(s) 48, 249
Fsp4HI GCNGC 2 cut(s) 48, 249
GluI GCNGC 2 cut(s) 48, 249
HapII CCGG 2 cut(s) 214, 274
HgaI GACGC 1 cut(s) 149
Hin1II CATG 2 cut(s) 161, 269
HinfI GANTC 1 cut(s) 40
HpaII CCGG 2 cut(s) 214, 274
HphI GGTGA 1 cut(s) 302
Hpy188III TCNNGA 3 cut(s) 214, 266, 304
Hpy99I CGWCG 1 cut(s) 143
HpyAV CCTTC 1 cut(s) 319
HpyCH4V TGCA 2 cut(s) 242, 248
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 2 cut(s) 161, 269
Kpn2I TCCGGA 1 cut(s) 213
Kzo9I GATC 2 cut(s) 78, 306
Lsp1109I GCAGC 2 cut(s) 59, 260
MabI ACCWGGT 1 cut(s) 286
MalI GATC 2 cut(s) 80, 308
MboI GATC 2 cut(s) 78, 306
MboII GAAGA 1 cut(s) 35
MflI RGATCY 2 cut(s) 78, 306
MhlI GDGCHC 1 cut(s) 205
MnlI CCTC 7 cut(s) 16, 82, 88, 97, 180, 262, 325
MroI TCCGGA 1 cut(s) 213
MspI CCGG 2 cut(s) 214, 274
MspR9I CCNGG 2 cut(s) 178, 288
MvaI CCWGG 2 cut(s) 178, 288
MwoI GCNNNNNNNGC 1 cut(s) 248
NdeII GATC 2 cut(s) 78, 306
NlaIII CATG 2 cut(s) 161, 269
PagI TCATGA 1 cut(s) 265
PaqCI CACCTGC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 40
PkrI GCNGC 2 cut(s) 49, 250
Psp6I CCWGG 2 cut(s) 176, 286
PspGI CCWGG 2 cut(s) 176, 286
PspPI GGNCC 1 cut(s) 271
PsuI RGATCY 2 cut(s) 78, 306
SatI GCNGC 2 cut(s) 48, 249
Sau3AI GATC 2 cut(s) 78, 306
Sau96I GGNCC 1 cut(s) 271
ScrFI CCNGG 2 cut(s) 178, 288
SduI GDGCHC 1 cut(s) 205
SetI ASST 6 cut(s) 8, 247, 253, 264, 289, 300
SexAI ACCWGGT 1 cut(s) 286
SinI GGWCC 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 176, 286
TfiI GAWTC 1 cut(s) 40
TseI GCWGC 2 cut(s) 47, 248
TspDTI ATGAA 2 cut(s) 36, 254
VpaK11BI GGWCC 1 cut(s) 271
XagI CCTNNNNNAGG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.