Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8349527.1

Orthogroup ID

OG0005266

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1006

Gene Structure 1006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8349527.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

atgcagtggctttcagagaggcacaagagaggtctgtttgaagctctggagaaggttaaagcggagctgatgattctgggttttatttcattaatcctgacctttggccaaagttacattgccaaaatctgtattccgcttaaggttgcaaacactatgctgccatgtagtcaagcttcaactgcttcggaagatgaagaatcaacaagtcacagaagactcttatcgactgaccgccgatttttagctactgcaactgctacttcatgcaatagtggttttgagccactgatctctattaatggattgcaccaattgcacatcctcatattcttcttggctgcctttcacgtagcatacagtgctatcacaatgcttcttgggaggctaaaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009856 GO:0010483 GO:0012505 GO:0016020 GO:0022414 GO:0032501 GO:0044424 GO:0044464 GO:0044703 GO:0044706 GO:0050896 GO:0051703 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

132

Amino Acids

14.71

Weight (kDa)

8.93

Isoelectric Point (pI)

43.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17430 AT2G17480 AT5G65970 AT5G65970
fragaria_vesca	FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150
malus_domestica	MD02G1113500.v1.1 MD15G1228700.v1.1
prunus_persica	Prupe.7G185400_v2.0.a1 Prupe.7G185400_v2.0.a1
pyrus_communis	pycom02g08850 pycom15g20380
rosa_chinensis	RchiOBHm_Chr2g0096921
rosa_laevigata	RLG00000016683
rosa_multiflora	Rmu_co8349527.1_g000001 Rmu_co8468103.1_g000001 Rmu_sc0033632.1_g000001 Rmu_ssc0000215.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145150
rosa_rugosa	Rorug02G0061900
rosa_samantha	Rh2AG109900 Rh2BG111800 Rh2CG113900 Rh2DG113000
rosa_wichuraiana	Rw2G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	62, 137, 235
AcoI	YGGCCR	1 cut(s)	106
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	41, 180
AluBI	AGCT	4 cut(s)	44, 67, 176, 248
AluI	AGCT	4 cut(s)	44, 67, 176, 248
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	160, 341
AseI	ATTAAT	2 cut(s)	92, 300
BalI	TGGCCA	1 cut(s)	108
BarI	GAAGNNNNNNTAC	2 cut(s)	160, 192
BbsI	GAAGAC	1 cut(s)	223
BbvI	GCAGC	2 cut(s)	147, 328
BfrI	CTTAAG	1 cut(s)	140
BisI	GCNGC	2 cut(s)	161, 342
BlsI	GCNGC	2 cut(s)	162, 343
BpiI	GAAGAC	1 cut(s)	223
BpmI	CTGGAG	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	321
BseMI	GCAATG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	147, 328
BshFI	GGCC	1 cut(s)	108
BsnI	GGCC	1 cut(s)	108
Bsp143I	GATC	1 cut(s)	291
BspACI	CCGC	3 cut(s)	62, 137, 235
BspANI	GGCC	1 cut(s)	108
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	117
BssMI	GATC	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	362
BstAFI	CTTAAG	1 cut(s)	140
BstAPI	GCANNNNNTGC	2 cut(s)	316, 362
BstBAI	YACGTR	1 cut(s)	352
BstF5I	GGATG	1 cut(s)	321
BstKTI	GATC	1 cut(s)	294
BstMBI	GATC	1 cut(s)	291
BstMWI	GCNNNNNNNGC	3 cut(s)	182, 316, 362
BstV1I	GCAGC	2 cut(s)	147, 328
BstV2I	GAAGAC	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	3 cut(s)	11, 287, 367
CviAII	CATG	2 cut(s)	165, 267
CviJI	RGCY	9 cut(s)	10, 44, 67, 108, 176, 248, 286, 341, 388
CviKI_1	RGCY	9 cut(s)	10, 44, 67, 108, 176, 248, 286, 341, 388
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	106
FaeI	CATG	2 cut(s)	168, 270
FaiI	YATR	6 cut(s)	158, 166, 268, 329, 358, 397
FatI	CATG	2 cut(s)	164, 266
Fnu4HI	GCNGC	2 cut(s)	161, 342
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	2 cut(s)	161, 342
GluI	GCNGC	2 cut(s)	161, 342
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	168, 270
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	3 cut(s)	73, 200, 219
Hpy188I	TCNGA	2 cut(s)	16, 190
Hpy188III	TCNNGA	2 cut(s)	47, 97
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	6 cut(s)	4, 149, 254, 270, 310, 319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	182, 316, 362
HpySE526I	ACGT	1 cut(s)	351
Hsp92II	CATG	2 cut(s)	168, 270
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	3 cut(s)	32, 62, 110
Lsp1109I	GCAGC	2 cut(s)	147, 328
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	2 cut(s)	113, 209
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	4 cut(s)	203, 209, 228, 325
MfeI	CAATTG	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	1 cut(s)	314
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	4 cut(s)	12, 23, 335, 378
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	4 cut(s)	57, 92, 141, 300
Msp20I	TGGCCA	1 cut(s)	108
MspCI	CTTAAG	1 cut(s)	140
MunI	CAATTG	1 cut(s)	314
MwoI	GCNNNNNNNGC	3 cut(s)	182, 316, 362
NdeII	GATC	1 cut(s)	291
NlaIII	CATG	2 cut(s)	168, 270
NmuCI	GTSAC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	73, 200
PkrI	GCNGC	2 cut(s)	162, 343
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
Ppu21I	YACGTR	1 cut(s)	352
PshBI	ATTAAT	2 cut(s)	92, 300
SaqAI	TTAA	4 cut(s)	57, 92, 141, 300
SatI	GCNGC	2 cut(s)	161, 342
Sau3AI	GATC	1 cut(s)	291
SchI	GAGTC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	314
SsiI	CCGC	3 cut(s)	62, 137, 235
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	1 cut(s)	227
TasI	AATT	1 cut(s)	314
TfiI	GAWTC	2 cut(s)	73, 200
Tru1I	TTAA	4 cut(s)	57, 92, 141, 300
Tru9I	TTAA	4 cut(s)	57, 92, 141, 300
TscAI	CASTG	2 cut(s)	294, 367
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	160, 341
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	3 cut(s)	78, 210, 255
TspRI	CASTG	2 cut(s)	294, 367
Vha464I	CTTAAG	1 cut(s)	140
VspI	ATTAAT	2 cut(s)	92, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.