Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000215.1

Orthogroup ID

OG0005266

Physical Location & Seq

Genomic Coordinates Forward (+)

425 .. 9030

Gene Structure 8606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000215.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atgtcatctttaactctggttctgtggttcgggttgttcttgttgggtgtgggtgtggctatggcggcagaggagactaagacgacgacggcggcggcgtcgagggagctggaccggacgcctacttgggccgtcgccggagtctgtgctgttatcatcatcatctctttgattttggagaaggtcctgcacaaagtcggaacgtggctttcagagaggcacaagagaggtctgtttgaagctctggagaaggttaaagcggagctgatgattctgggttttatttcattaatcctgacctttggccaaagttacattgccaaaatctgtattccgcttaaggttgcaaacactatgctgccatgtagtcaagcttcaactgcttcggaagatgaagaatcaacaagtcacagaagactcttatcgactgaccgccgatttttagctactgcaactgctacttcatgcaatagtggttttgagccactgatctctattaatggattgcaccaattgcacatcctcatattcttcttggctgcctttcacgtagcatacagtgctatcacaatgcttcttgggaggctaaagaatgcgttccagattatatatttcttgtggatatggtattcatttgggttgaaatcttgcttccatgccaatttcaagctagcaatcgcaaaagtaattgtagggggcggagttctatgtatgtgcagctacatcacactgccactatatgccctcgtaactcagatgggttcaaatatgaagaagtccatctttgatgaacaaacatccaaggcccttaagaagtggcacaatgctgtgaaaaagaagaccgccgggcaaggaggcaagtctcctgcacgagtcctgggtgggagcaccgttggtggaagcactgttggtggaagctcatctgtttcggccgtgcactcctctggacctacattacaccgtttcaaaacgaccggccactcaacccgctcctccactttcgaagatcacgagacatcagatcatgaaactgatcctttgtcaccctcatcatcaacaaacttgatagtaagagtggatcaaggtgggcaacaaactgaaataaccgagccacaccctgaggaggagcaaaccaccattgaaatggacgagttcacatttacgaagcctgaactggcaaaacaaacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009856 GO:0010483 GO:0012505 GO:0016020 GO:0022414 GO:0032501 GO:0044424 GO:0044464 GO:0044703 GO:0044706 GO:0050896 GO:0051703 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

396

Amino Acids

43.15

Weight (kDa)

8.59

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17430 AT2G17480 AT5G65970 AT5G65970
fragaria_vesca	FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150
malus_domestica	MD02G1113500.v1.1 MD15G1228700.v1.1
prunus_persica	Prupe.7G185400_v2.0.a1 Prupe.7G185400_v2.0.a1
pyrus_communis	pycom02g08850 pycom15g20380
rosa_chinensis	RchiOBHm_Chr2g0096921
rosa_laevigata	RLG00000016683
rosa_multiflora	Rmu_co8349527.1_g000001 Rmu_co8468103.1_g000001 Rmu_sc0033632.1_g000001 Rmu_ssc0000215.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145150
rosa_rugosa	Rorug02G0061900
rosa_samantha	Rh2AG109900 Rh2BG111800 Rh2CG113900 Rh2DG113000
rosa_wichuraiana	Rw2G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	990
AciI	CCGC	9 cut(s)	65, 92, 95, 260, 335, 433, 699, 843, 988
AclWI	GGATC	2 cut(s)	1028, 1086
AcoI	YGGCCR	3 cut(s)	304, 930, 976
AcyI	GRCGYC	2 cut(s)	98, 119
AfiI	CCNNNNNNNGG	1 cut(s)	1123
AflII	CTTAAG	2 cut(s)	338, 809
AgsI	TTSAA	7 cut(s)	239, 378, 643, 667, 765, 967, 1142
AjnI	CCWGG	1 cut(s)	876
AluBI	AGCT	8 cut(s)	109, 242, 265, 374, 446, 670, 720, 918
AluI	AGCT	8 cut(s)	109, 242, 265, 374, 446, 670, 720, 918
Alw21I	GWGCWC	2 cut(s)	890, 939
Alw26I	GTCTC	3 cut(s)	68, 867, 1007
Alw44I	GTGCAC	1 cut(s)	935
AlwI	GGATC	2 cut(s)	1028, 1086
AoxI	GGCC	5 cut(s)	129, 304, 804, 930, 976
ApaLI	GTGCAC	1 cut(s)	935
ApeKI	GCWGC	3 cut(s)	358, 539, 717
AseI	ATTAAT	2 cut(s)	290, 498
Asp700I	GAANNNNTTC	1 cut(s)	596
AspS9I	GGNCC	5 cut(s)	112, 129, 184, 805, 947
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	1 cut(s)	1035
AsuII	TTCGAA	1 cut(s)	1002
AsuNHI	GCTAGC	1 cut(s)	670
AvaII	GGWCC	3 cut(s)	112, 184, 947
AxyI	CCTNAGG	1 cut(s)	1119
BaeGI	GKGCMC	1 cut(s)	939
BalI	TGGCCA	1 cut(s)	306
BarI	GAAGNNNNNNTAC	2 cut(s)	358, 390
BauI	CACGAG	2 cut(s)	870, 1010
BbsI	GAAGAC	2 cut(s)	421, 845
Bbv12I	GWGCWC	2 cut(s)	890, 939
BbvI	GCAGC	3 cut(s)	345, 526, 729
BccI	CCATC	2 cut(s)	751, 788
BceAI	ACGGC	3 cut(s)	105, 116, 917
BciT130I	CCWGG	1 cut(s)	878
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	3 cut(s)	68, 867, 1007
BfaI	CTAG	1 cut(s)	671
BfrI	CTTAAG	2 cut(s)	338, 809
BisI	GCNGC	6 cut(s)	66, 93, 96, 359, 540, 718
BlsI	GCNGC	6 cut(s)	67, 94, 97, 360, 541, 719
Bme1390I	CCNGG	2 cut(s)	847, 878
Bme18I	GGWCC	3 cut(s)	112, 184, 947
BmgT120I	GGNCC	5 cut(s)	112, 129, 184, 805, 947
BmrFI	CCNGG	2 cut(s)	847, 878
BmtI	GCTAGC	1 cut(s)	674
BpiI	GAAGAC	2 cut(s)	421, 845
BpmI	CTGGAG	1 cut(s)	266
Bpu14I	TTCGAA	1 cut(s)	1002
BpuMI	CCSGG	1 cut(s)	847
BsaAI	YACGTR	1 cut(s)	550
BsaHI	GRCGYC	2 cut(s)	98, 119
BsaJI	CCNNGG	2 cut(s)	801, 877
BsaWI	WCCGGW	1 cut(s)	114
Bsc4I	CCNNNNNNNGG	1 cut(s)	1123
Bse118I	RCCGGY	1 cut(s)	974
Bse1I	ACTGG	1 cut(s)	1179
Bse21I	CCTNAGG	1 cut(s)	1119
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	878
BseDI	CCNNGG	2 cut(s)	801, 877
BseGI	GGATG	2 cut(s)	519, 797
BseLI	CCNNNNNNNGG	1 cut(s)	1123
BseMI	GCAATG	1 cut(s)	315
BseMII	CTCAG	2 cut(s)	767, 1110
BseNI	ACTGG	1 cut(s)	1179
BseRI	GAGGAG	5 cut(s)	86, 931, 982, 1136, 1139
BseSI	GKGCMC	1 cut(s)	939
BseX3I	CGGCCG	1 cut(s)	930
BseXI	GCAGC	3 cut(s)	345, 526, 729
BsgI	GTGCAG	3 cut(s)	173, 736, 852
Bsh1285I	CGRYCG	2 cut(s)	933, 975
BshFI	GGCC	5 cut(s)	131, 306, 806, 932, 978
BsiEI	CGRYCG	2 cut(s)	933, 975
BsiHKAI	GWGCWC	2 cut(s)	890, 939
BsiSI	CCGG	4 cut(s)	115, 138, 846, 975
BslI	CCNNNNNNNGG	1 cut(s)	1123
BsmAI	GTCTC	3 cut(s)	68, 867, 1007
BsmI	GAATGC	1 cut(s)	598
BsnI	GGCC	5 cut(s)	131, 306, 806, 932, 978
Bsp119I	TTCGAA	1 cut(s)	1002
Bsp1286I	GDGCHC	2 cut(s)	890, 939
Bsp143I	GATC	5 cut(s)	489, 1006, 1021, 1033, 1078
BspACI	CCGC	9 cut(s)	65, 92, 95, 260, 335, 433, 699, 843, 988
BspANI	GGCC	5 cut(s)	131, 306, 806, 932, 978
BspCNI	CTCAG	2 cut(s)	766, 1111
BspHI	TCATGA	1 cut(s)	1024
BspOI	GCTAGC	1 cut(s)	674
BspPI	GGATC	2 cut(s)	1028, 1086
BspT104I	TTCGAA	1 cut(s)	1002
BspTI	CTTAAG	2 cut(s)	338, 809
BsrBI	CCGCTC	1 cut(s)	990
BsrDI	GCAATG	1 cut(s)	315
BsrFI	RCCGGY	1 cut(s)	974
BsrI	ACTGG	1 cut(s)	1179
BssAI	RCCGGY	1 cut(s)	974
BssECI	CCNNGG	2 cut(s)	801, 877
BssMI	GATC	5 cut(s)	489, 1006, 1021, 1033, 1078
BssNI	GRCGYC	2 cut(s)	98, 119
BssSI	CACGAG	2 cut(s)	870, 1010
BssT1I	CCWWGG	1 cut(s)	801
Bst2BI	CACGAG	2 cut(s)	870, 1010
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	4 cut(s)	560, 892, 907, 962
BstACI	GRCGYC	2 cut(s)	98, 119
BstAFI	CTTAAG	2 cut(s)	338, 809
BstAPI	GCANNNNNTGC	2 cut(s)	514, 560
BstBAI	YACGTR	1 cut(s)	550
BstBI	TTCGAA	1 cut(s)	1002
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	3 cut(s)	78, 753, 1119
BstF5I	GGATG	2 cut(s)	519, 797
BstKTI	GATC	5 cut(s)	492, 1009, 1024, 1036, 1081
BstMAI	GTCTC	3 cut(s)	68, 867, 1007
BstMBI	GATC	5 cut(s)	489, 1006, 1021, 1033, 1078
BstMCI	CGRYCG	2 cut(s)	933, 975
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 380, 514, 560
BstNI	CCWGG	1 cut(s)	878
BstSCI	CCNGG	2 cut(s)	845, 876
BstSLI	GKGCMC	1 cut(s)	939
BstV1I	GCAGC	3 cut(s)	345, 526, 729
BstV2I	GAAGAC	2 cut(s)	421, 845
BstXI	CCANNNNNNTGG	1 cut(s)	1144
BstZI	CGGCCG	1 cut(s)	930
Bsu36I	CCTNAGG	1 cut(s)	1119
BsuRI	GGCC	5 cut(s)	131, 306, 806, 932, 978
BtsCI	GGATG	2 cut(s)	519, 797
BtsI	GCAGTG	1 cut(s)	728
BtsIMutI	CAGTG	4 cut(s)	485, 565, 728, 903
Cac8I	GCNNGC	1 cut(s)	672
CciI	TCATGA	1 cut(s)	1024
Cfr10I	RCCGGY	1 cut(s)	974
Cfr13I	GGNCC	5 cut(s)	112, 129, 184, 805, 947
CseI	GACGC	2 cut(s)	87, 127
CviAII	CATG	4 cut(s)	363, 465, 656, 1025
DdeI	CTNAG	3 cut(s)	78, 753, 1119
DpnI	GATC	5 cut(s)	491, 1008, 1023, 1035, 1080
DpnII	GATC	5 cut(s)	489, 1006, 1021, 1033, 1078
EaeI	YGGCCR	3 cut(s)	304, 930, 976
EagI	CGGCCG	1 cut(s)	930
EciI	GGCGGA	1 cut(s)	714
EclXI	CGGCCG	1 cut(s)	930
Eco130I	CCWWGG	1 cut(s)	801
Eco47I	GGWCC	3 cut(s)	112, 184, 947
Eco52I	CGGCCG	1 cut(s)	930
Eco81I	CCTNAGG	1 cut(s)	1119
EcoO109I	RGGNCCY	2 cut(s)	184, 805
EcoRII	CCWGG	1 cut(s)	876
EcoT14I	CCWWGG	1 cut(s)	801
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	4 cut(s)	366, 468, 659, 1028
FalI	AAGNNNNNCTT	2 cut(s)	767, 799
FatI	CATG	4 cut(s)	362, 464, 655, 1024
FauI	CCCGC	1 cut(s)	995
Fnu4HI	GCNGC	6 cut(s)	66, 93, 96, 359, 540, 718
FokI	GGATG	2 cut(s)	506, 784
Fsp4HI	GCNGC	6 cut(s)	66, 93, 96, 359, 540, 718
FspBI	CTAG	1 cut(s)	671
GluI	GCNGC	6 cut(s)	66, 93, 96, 359, 540, 718
GsuI	CTGGAG	1 cut(s)	266
HaeIII	GGCC	5 cut(s)	131, 306, 806, 932, 978
HapII	CCGG	4 cut(s)	115, 138, 846, 975
HgaI	GACGC	2 cut(s)	87, 127
Hin1I	GRCGYC	2 cut(s)	98, 119
Hin1II	CATG	4 cut(s)	366, 468, 659, 1028
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	5 cut(s)	141, 271, 398, 417, 873
HpaII	CCGG	4 cut(s)	115, 138, 846, 975
HphI	GGTGA	1 cut(s)	1035
Hpy166II	GTNNAC	2 cut(s)	937, 1155
Hpy188I	TCNGA	5 cut(s)	200, 214, 388, 756, 1021
Hpy188III	TCNNGA	6 cut(s)	245, 295, 601, 945, 1010, 1025
Hpy8I	GTNNAC	2 cut(s)	937, 1155
Hpy99I	CGWCG	4 cut(s)	88, 91, 103, 137
HpyAV	CCTTC	2 cut(s)	175, 244
HpyCH4III	ACNGT	4 cut(s)	560, 892, 907, 962
HpyCH4IV	ACGT	2 cut(s)	203, 549
HpyCH4V	TGCA	9 cut(s)	190, 347, 452, 468, 508, 517, 717, 869, 937
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 380, 514, 560
HpyF3I	CTNAG	3 cut(s)	78, 753, 1119
HpySE526I	ACGT	2 cut(s)	203, 549
Hsp92I	GRCGYC	2 cut(s)	98, 119
Hsp92II	CATG	4 cut(s)	366, 468, 659, 1028
Kzo9I	GATC	5 cut(s)	489, 1006, 1021, 1033, 1078
LmnI	GCTCC	5 cut(s)	106, 262, 885, 995, 1126
Lsp1109I	GCAGC	3 cut(s)	345, 526, 729
MaeI	CTAG	1 cut(s)	671
MaeII	ACGT	2 cut(s)	203, 549
MaeIII	GTNAC	4 cut(s)	311, 407, 748, 1041
MalI	GATC	5 cut(s)	491, 1008, 1023, 1035, 1080
MbiI	CCGCTC	1 cut(s)	990
MboI	GATC	5 cut(s)	489, 1006, 1021, 1033, 1078
MboII	GAAGA	7 cut(s)	401, 407, 426, 523, 784, 850, 1016
MfeI	CAATTG	1 cut(s)	512
MhlI	GDGCHC	2 cut(s)	890, 939
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	3 cut(s)	512, 661, 687
MluNI	TGGCCA	1 cut(s)	306
MlyI	GAGTC	3 cut(s)	150, 411, 882
MmeI	TCCRAC	1 cut(s)	178
Mox20I	TGGCCA	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	596
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	6 cut(s)	11, 255, 290, 339, 498, 810
MslI	CAYNNNNRTG	1 cut(s)	1142
Msp20I	TGGCCA	1 cut(s)	306
MspCI	CTTAAG	2 cut(s)	338, 809
MspI	CCGG	4 cut(s)	115, 138, 846, 975
MspR9I	CCNGG	2 cut(s)	847, 878
MunI	CAATTG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	598
MvaI	CCWGG	1 cut(s)	878
MwoI	GCNNNNNNNGC	4 cut(s)	65, 380, 514, 560
NciI	CCSGG	1 cut(s)	847
NdeII	GATC	5 cut(s)	489, 1006, 1021, 1033, 1078
NheI	GCTAGC	1 cut(s)	670
NlaIII	CATG	4 cut(s)	366, 468, 659, 1028
NmuCI	GTSAC	2 cut(s)	407, 1041
NspV	TTCGAA	1 cut(s)	1002
PagI	TCATGA	1 cut(s)	1024
PcsI	WCGNNNNNNNCGW	2 cut(s)	95, 1008
PctI	GAATGC	1 cut(s)	598
PdmI	GAANNNNTTC	1 cut(s)	596
PfeI	GAWTC	2 cut(s)	271, 398
PkrI	GCNGC	6 cut(s)	67, 94, 97, 360, 541, 719
PleI	GAGTC	3 cut(s)	149, 411, 881
PpsI	GAGTC	3 cut(s)	149, 411, 881
Ppu21I	YACGTR	1 cut(s)	550
PpuMI	RGGWCCY	1 cut(s)	184
PshBI	ATTAAT	2 cut(s)	290, 498
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	876
PspGI	CCWGG	1 cut(s)	876
PspPI	GGNCC	5 cut(s)	112, 129, 184, 805, 947
PspPPI	RGGWCCY	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	1142
SaqAI	TTAA	6 cut(s)	11, 255, 290, 339, 498, 810
SatI	GCNGC	6 cut(s)	66, 93, 96, 359, 540, 718
Sau3AI	GATC	5 cut(s)	489, 1006, 1021, 1033, 1078
Sau96I	GGNCC	5 cut(s)	112, 129, 184, 805, 947
SchI	GAGTC	3 cut(s)	150, 411, 882
ScrFI	CCNGG	2 cut(s)	847, 878
SduI	GDGCHC	2 cut(s)	890, 939
SfuI	TTCGAA	1 cut(s)	1002
SinI	GGWCC	3 cut(s)	112, 184, 947
SmiMI	CAYNNNNRTG	1 cut(s)	1142
SmlI	CTYRAG	2 cut(s)	338, 809
SmoI	CTYRAG	2 cut(s)	338, 809
Sse9I	AATT	3 cut(s)	512, 661, 687
SsiI	CCGC	9 cut(s)	65, 92, 95, 260, 335, 433, 699, 843, 988
SspMI	CTAG	1 cut(s)	671
StyD4I	CCNGG	2 cut(s)	845, 876
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	4 cut(s)	560, 892, 907, 962
TaiI	ACGT	2 cut(s)	206, 552
TaqI	TCGA	3 cut(s)	101, 425, 1002
TasI	AATT	3 cut(s)	512, 661, 687
TauI	GCSGC	3 cut(s)	68, 95, 98
TfiI	GAWTC	2 cut(s)	271, 398
Tru1I	TTAA	6 cut(s)	11, 255, 290, 339, 498, 810
Tru9I	TTAA	6 cut(s)	11, 255, 290, 339, 498, 810
TscAI	CASTG	4 cut(s)	492, 565, 735, 910
TseFI	GTSAC	2 cut(s)	407, 1041
TseI	GCWGC	3 cut(s)	358, 539, 717
Tsp45I	GTSAC	2 cut(s)	407, 1041
TspDTI	ATGAA	7 cut(s)	276, 408, 453, 621, 785, 804, 1041
TspRI	CASTG	4 cut(s)	492, 565, 735, 910
Vha464I	CTTAAG	2 cut(s)	338, 809
VneI	GTGCAC	1 cut(s)	935
VpaK11BI	GGWCC	3 cut(s)	112, 184, 947
VspI	ATTAAT	2 cut(s)	290, 498
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1141
XmnI	GAANNNNTTC	1 cut(s)	596
XspI	CTAG	1 cut(s)	671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.