Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8468103.1

Orthogroup ID

OG0005266

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1962

Gene Structure 1962 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8468103.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 515 bp

ggatgcttctttcgacaattttttaggtctgttagtaaatctgactacttgacagtgcgcaatggattcatttctgtccatttagcccctggaagtaaattcaacttccaaaagtatatcaagagatcgttagaagatgacttccaggtcgttgtcggagtcagtcccatactatgggcatcatttgtgatatttttgctccttaatgttaaaggatggcaagcactattttgggcatccatgatccctgtcattataatcttagccattggaacagaacttcaatccgtcctgaccaagatggctctagaaatctcagaaaggcacgcagtggttcaagggattcctcttgtacaaggctctgatagatatttttggtttggtcgaccgcatttggttcttcatctcatccattttgcgttgtttcagaatgcgttccagattatatatttcttgtggatatggtattcatttgggttgaaatcttgcttccatgccaatttcaagctagcaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009856 GO:0010483 GO:0012505 GO:0016020 GO:0022414 GO:0032501 GO:0044424 GO:0044464 GO:0044703 GO:0044706 GO:0050896 GO:0051703 GO:0051704 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

171

Amino Acids

19.81

Weight (kDa)

9.7

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005266)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17430 AT2G17480 AT5G65970 AT5G65970
fragaria_vesca	FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150 FvH4_1g10150
malus_domestica	MD02G1113500.v1.1 MD15G1228700.v1.1
prunus_persica	Prupe.7G185400_v2.0.a1 Prupe.7G185400_v2.0.a1
pyrus_communis	pycom02g08850 pycom15g20380
rosa_chinensis	RchiOBHm_Chr2g0096921
rosa_laevigata	RLG00000016683
rosa_multiflora	Rmu_co8349527.1_g000001 Rmu_co8468103.1_g000001 Rmu_sc0033632.1_g000001 Rmu_ssc0000215.1_g000001
rosa_roxburghii	Rroxscaffold_2G00145150
rosa_rugosa	Rorug02G0061900
rosa_samantha	Rh2AG109900 Rh2BG111800 Rh2CG113900 Rh2DG113000
rosa_wichuraiana	Rw2G008490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	257
AasI	GACNNNNNNGTC	1 cut(s)	146
Acc16I	TGCGCA	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	174
AccI	GTMKAC	1 cut(s)	385
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	238
AcsI	RAATTY	1 cut(s)	98
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	1 cut(s)	174
AgsI	TTSAA	5 cut(s)	103, 284, 338, 481, 505
AjnI	CCWGG	2 cut(s)	88, 144
AluBI	AGCT	1 cut(s)	508
AluI	AGCT	1 cut(s)	508
AlwI	GGATC	1 cut(s)	238
ApoI	RAATTY	1 cut(s)	98
Asp700I	GAANNNNTTC	1 cut(s)	434
AspLEI	GCGC	1 cut(s)	60
AsuNHI	GCTAGC	1 cut(s)	508
BccI	CCATC	2 cut(s)	210, 295
BciT130I	CCWGG	2 cut(s)	90, 146
BfaI	CTAG	2 cut(s)	308, 509
Bme1390I	CCNGG	2 cut(s)	90, 146
BmrFI	CCNGG	2 cut(s)	90, 146
BmsI	GCATC	2 cut(s)	188, 245
BmtI	GCTAGC	1 cut(s)	512
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	2 cut(s)	90, 146
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	4 cut(s)	8, 221, 236, 408
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMI	GCAATG	1 cut(s)	67
BseMII	CTCAG	1 cut(s)	330
Bsh1285I	CGRYCG	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	389
BslFI	GGGAC	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	436
Bsp1407I	TGTACA	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	125, 243
BspACI	CCGC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	329
BspOI	GCTAGC	1 cut(s)	512
BspPI	GGATC	1 cut(s)	238
BsrDI	GCAATG	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	352
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	2 cut(s)	125, 243
Bst2UI	CCWGG	2 cut(s)	90, 146
Bst4CI	ACNGT	1 cut(s)	55
BstAUI	TGTACA	1 cut(s)	352
BstC8I	GCNNGC	3 cut(s)	222, 327, 510
BstDEI	CTNAG	2 cut(s)	262, 316
BstF5I	GGATG	4 cut(s)	8, 221, 236, 408
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	2 cut(s)	128, 246
BstMBI	GATC	2 cut(s)	125, 243
BstMCI	CGRYCG	1 cut(s)	389
BstNI	CCWGG	2 cut(s)	90, 146
BstSCI	CCNGG	2 cut(s)	88, 144
BtsCI	GGATG	4 cut(s)	8, 221, 236, 408
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	2 cut(s)	60, 336
Cac8I	GCNNGC	3 cut(s)	222, 327, 510
CfoI	GCGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	2 cut(s)	241, 494
CviJI	RGCY	5 cut(s)	86, 266, 305, 360, 508
CviKI_1	RGCY	5 cut(s)	86, 266, 305, 360, 508
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	2 cut(s)	262, 316
DpnI	GATC	2 cut(s)	127, 245
DpnII	GATC	2 cut(s)	125, 243
DraIII	CACNNNGTG	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	88, 144
FaeI	CATG	2 cut(s)	244, 497
FaiI	YATR	9 cut(s)	117, 170, 175, 242, 257, 446, 448, 463, 495
FaqI	GGGAC	1 cut(s)	150
FatI	CATG	2 cut(s)	240, 493
FblI	GTMKAC	1 cut(s)	385
FokI	GGATG	4 cut(s)	15, 223, 228, 395
FspBI	CTAG	2 cut(s)	308, 509
FspI	TGCGCA	1 cut(s)	59
GlaI	GCGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	244, 497
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HincII	GTYRAC	1 cut(s)	386
HindII	GTYRAC	1 cut(s)	386
HinfI	GANTC	3 cut(s)	66, 159, 343
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	5 cut(s)	43, 158, 319, 364, 429
Hpy188III	TCNNGA	4 cut(s)	121, 292, 308, 439
Hpy8I	GTNNAC	1 cut(s)	386
HpyCH4III	ACNGT	1 cut(s)	55
HpyF3I	CTNAG	2 cut(s)	262, 316
Hsp92II	CATG	2 cut(s)	244, 497
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	2 cut(s)	125, 243
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	7 cut(s)	75, 102, 131, 158, 261, 305, 452
LweI	GCATC	2 cut(s)	188, 245
MaeI	CTAG	2 cut(s)	308, 509
MalI	GATC	2 cut(s)	127, 245
MboI	GATC	2 cut(s)	125, 243
MboII	GAAGA	2 cut(s)	146, 392
MluCI	AATT	3 cut(s)	17, 98, 499
MlyI	GAGTC	1 cut(s)	168
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	2 cut(s)	204, 210
MspR9I	CCNGG	2 cut(s)	90, 146
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	2 cut(s)	90, 146
NdeII	GATC	2 cut(s)	125, 243
NheI	GCTAGC	1 cut(s)	508
NlaIII	CATG	2 cut(s)	244, 497
NsbI	TGCGCA	1 cut(s)	59
PctI	GAATGC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	2 cut(s)	66, 343
PflMI	CCANNNNNTGG	1 cut(s)	174
PleI	GAGTC	1 cut(s)	167
PpsI	GAGTC	1 cut(s)	167
PsiI	TTATAA	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	88, 144
PspGI	CCWGG	2 cut(s)	88, 144
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
SalI	GTCGAC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	204, 210
Sau3AI	GATC	2 cut(s)	125, 243
SchI	GAGTC	1 cut(s)	168
ScrFI	CCNGG	2 cut(s)	90, 146
SetI	ASST	3 cut(s)	29, 150, 510
SfaNI	GCATC	2 cut(s)	188, 245
Sse9I	AATT	3 cut(s)	17, 98, 499
SsiI	CCGC	1 cut(s)	389
SspMI	CTAG	2 cut(s)	308, 509
StyD4I	CCNGG	2 cut(s)	88, 144
TaaI	ACNGT	1 cut(s)	55
TaqI	TCGA	2 cut(s)	13, 385
TasI	AATT	3 cut(s)	17, 98, 499
TatI	WGTACW	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	66, 343
Tru1I	TTAA	2 cut(s)	204, 210
Tru9I	TTAA	2 cut(s)	204, 210
TscAI	CASTG	2 cut(s)	60, 336
TspDTI	ATGAA	3 cut(s)	58, 392, 459
TspGWI	ACGGA	1 cut(s)	277
TspRI	CASTG	2 cut(s)	60, 336
Van91I	CCANNNNNTGG	1 cut(s)	174
XapI	RAATTY	1 cut(s)	98
XbaI	TCTAGA	1 cut(s)	307
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	385
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	2 cut(s)	308, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.