Rmu_sc0033632.1_g000001

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033632.1
Physical Location & Seq
Forward (+)
358 .. 1361
1004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033632.1_g000001.1.cds

Sequence Viewer

Length: 399 bp
atgcagtggctttcagagaggcacaagagaggtctgtttgaagctctggagaaggttaaagcggagctgatgattctgggttttatttcattaatcctgacctttggccaaagttacattgccaaaatctgtattccgcttaaggttgcaaacactatgctgccatgtagtcaagcttcaactgcttcggaagatgaagaatcaacaagtcacagaagactcttatcgactgaccgccgatttttagctactgcaactgctacttcatgcaatagtggttttgagccactgatctctattaatggattgcaccaattgcacatcctcatattcttcttggctgcctttcacgtagcatacagtgctatcacaatgcttcttgggaggctaaaggtatga

Protein Analysis

132

Amino Acids

14.71

Weight (kDa)

8.93

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 62, 137, 235
AcoI YGGCCR 1 cut(s) 106
AflII CTTAAG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 41, 180
AluBI AGCT 4 cut(s) 44, 67, 176, 248
AluI AGCT 4 cut(s) 44, 67, 176, 248
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 160, 341
AseI ATTAAT 2 cut(s) 92, 300
BalI TGGCCA 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 160, 192
BbsI GAAGAC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 147, 328
BfrI CTTAAG 1 cut(s) 140
BisI GCNGC 2 cut(s) 161, 342
BlsI GCNGC 2 cut(s) 162, 343
BpiI GAAGAC 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 117
BseGI GGATG 1 cut(s) 321
BseMI GCAATG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 147, 328
BshFI GGCC 1 cut(s) 108
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 291
BspACI CCGC 3 cut(s) 62, 137, 235
BspANI GGCC 1 cut(s) 108
BspTI CTTAAG 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 117
BssMI GATC 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 362
BstAFI CTTAAG 1 cut(s) 140
BstAPI GCANNNNNTGC 2 cut(s) 316, 362
BstBAI YACGTR 1 cut(s) 352
BstF5I GGATG 1 cut(s) 321
BstKTI GATC 1 cut(s) 294
BstMBI GATC 1 cut(s) 291
BstMWI GCNNNNNNNGC 3 cut(s) 182, 316, 362
BstV1I GCAGC 2 cut(s) 147, 328
BstV2I GAAGAC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 321
BtsI GCAGTG 1 cut(s) 11
BtsIMutI CAGTG 3 cut(s) 11, 287, 367
CviAII CATG 2 cut(s) 165, 267
CviJI RGCY 9 cut(s) 10, 44, 67, 108, 176, 248, 286, 341, 388
CviKI_1 RGCY 9 cut(s) 10, 44, 67, 108, 176, 248, 286, 341, 388
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
EaeI YGGCCR 1 cut(s) 106
FaeI CATG 2 cut(s) 168, 270
FaiI YATR 6 cut(s) 158, 166, 268, 329, 358, 397
FatI CATG 2 cut(s) 164, 266
Fnu4HI GCNGC 2 cut(s) 161, 342
FokI GGATG 1 cut(s) 308
Fsp4HI GCNGC 2 cut(s) 161, 342
GluI GCNGC 2 cut(s) 161, 342
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 2 cut(s) 168, 270
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 3 cut(s) 73, 200, 219
Hpy188I TCNGA 2 cut(s) 16, 190
Hpy188III TCNNGA 2 cut(s) 47, 97
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 6 cut(s) 4, 149, 254, 270, 310, 319
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 316, 362
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 2 cut(s) 168, 270
Kzo9I GATC 1 cut(s) 291
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 3 cut(s) 32, 62, 110
Lsp1109I GCAGC 2 cut(s) 147, 328
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 2 cut(s) 113, 209
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 4 cut(s) 203, 209, 228, 325
MfeI CAATTG 1 cut(s) 314
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 1 cut(s) 314
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 1 cut(s) 213
MnlI CCTC 4 cut(s) 12, 23, 335, 378
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 4 cut(s) 57, 92, 141, 300
Msp20I TGGCCA 1 cut(s) 108
MspCI CTTAAG 1 cut(s) 140
MunI CAATTG 1 cut(s) 314
MwoI GCNNNNNNNGC 3 cut(s) 182, 316, 362
NdeII GATC 1 cut(s) 291
NlaIII CATG 2 cut(s) 168, 270
NmuCI GTSAC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 73, 200
PkrI GCNGC 2 cut(s) 162, 343
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
Ppu21I YACGTR 1 cut(s) 352
PshBI ATTAAT 2 cut(s) 92, 300
SaqAI TTAA 4 cut(s) 57, 92, 141, 300
SatI GCNGC 2 cut(s) 161, 342
Sau3AI GATC 1 cut(s) 291
SchI GAGTC 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
Sse9I AATT 1 cut(s) 314
SsiI CCGC 3 cut(s) 62, 137, 235
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 227
TasI AATT 1 cut(s) 314
TfiI GAWTC 2 cut(s) 73, 200
Tru1I TTAA 4 cut(s) 57, 92, 141, 300
Tru9I TTAA 4 cut(s) 57, 92, 141, 300
TscAI CASTG 2 cut(s) 294, 367
TseFI GTSAC 1 cut(s) 209
TseI GCWGC 2 cut(s) 160, 341
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 3 cut(s) 78, 210, 255
TspRI CASTG 2 cut(s) 294, 367
Vha464I CTTAAG 1 cut(s) 140
VspI ATTAAT 2 cut(s) 92, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.