Rh2CG113900

May be involved in modulation of pathogen defense and leaf cell death

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0005266
Physical Location & Seq
Reverse (-)
9997729 .. 10003748
6020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG113900.1

Sequence Viewer

Length: 1251 bp
ATGTCATCTTTAACTCTGGTTCTGTGGTTCGGGTTGTTCTTGTTGGGTGTGGGTGTGGCTATGGCGGCAGAGGAGACTACGACGACGACGGCGGCGTCGAGGGAGCTGGACCGGACGCCTACTTGGGCCGTCGCCGGAGTCTGTGCTGTTATCATCATCATCTCTTTGATTTTGGAGAAGGTCCTGCACAAAGTCGGAACGTGGCTTTCAGAGAGGCACAAGAGAGGTCTGTTTGAAGCTCTGGAGAAGGTTAAGGCGGAGCTGATGATTCTGGGTTTTATTTCACTAATCCTGACCTTTGGCCAAAGTTACATTGCCAAAATCTGTATTCCGCTTAAGGTTGCAAACACTATGCTGCCATGTAGTCAAGCTTCAACTGCTTCGGAAGATGAAGAATCAACAAGTCACAGAAGACTCTTATCGACTGACCGCCGATTTTTAGCTACTGCAACTACTACTACATGCAAGAGTGGTTTTGAGCCACTGATCTCTATTAATGGATTGCACCAATTGCACATCCTCATATTCTTCTTGGCTGCCTTTCACGTAGCATACAGTGCTATCACAATGCTTCTTGGGAGGCTAAAGATTCGGGGATGGAAGGCATGGGAGGCTGAGACTTCATCGCATAGCTATGAGTTCTCAAATGATCCTTCAAGATTCAGACTTACTCATGAGACATCATTTGTGAAAGCACATACCAGTTACTGGACTAGGATTCCATTCTTCTTTTATGTTGGATGCTTCTTTCGACAATTTTTTAGGTCTGTTAGTAAATCTGACTACTTGACAGTGCGCAATGGATTCATTTCTGTCCATTTAGCCCCTGGAAGTAAATTCAACTTCCAAAAGTATATCAAGAGATCGTTAGAAGATGACTTCCAGGTCGTTGTCGGAGTCAGTCCCATACTATGGGCATCATTTGTGATATTTTTGCTCCTTAATGTTAAAGGATGGCAAGCACTATTTTGGGCATCCACGATCCCTGTCATTATAATCTTAGCCATTGGAACAGAACTTCAATCCGTCCTGACCAAGATGGCTCTAGAAATCTCAGAAAGGCACGCAGTGGTTCAAGGGATTCCTCTTGTACAAGGCTCTGATAGATATTTTTGGTTTGGTCGACCGCATTTGGTTCTTCATCTCATCCATTTTGCGTTGTTTCAGGTATTTCATTGCCTACTCTCTCTTCTTTTCTTTTTTTCAACTTTTAAATCTGAGATTTTTTGTTTACTAGAGTGGAATATGTGA

Protein Analysis

416

Amino Acids

47.22

Weight (kDa)

9.12

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 34 - 405 1.3e-164 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 995
AasI GACNNNNNNGTC 2 cut(s) 94, 884
Acc16I TGCGCA 1 cut(s) 797
AccB7I CCANNNNNTGG 2 cut(s) 708, 912
AccI GTMKAC 1 cut(s) 1123
AciI CCGC 6 cut(s) 65, 92, 257, 332, 430, 1127
AclWI GGATC 2 cut(s) 644, 976
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 836
AcyI GRCGYC 2 cut(s) 95, 116
AdeI CACNNNGTG 1 cut(s) 1069
AfaI GTAC 1 cut(s) 1092
AfiI CCNNNNNNNGG 2 cut(s) 708, 912
AflII CTTAAG 1 cut(s) 335
AgsI TTSAA 7 cut(s) 236, 375, 657, 841, 1022, 1076, 1206
AjnI CCWGG 2 cut(s) 826, 882
AluBI AGCT 6 cut(s) 106, 239, 262, 371, 443, 633
AluI AGCT 6 cut(s) 106, 239, 262, 371, 443, 633
Alw26I GTCTC 3 cut(s) 68, 611, 671
AlwI GGATC 2 cut(s) 644, 976
AlwNI CAGNNNCTG 1 cut(s) 708
AoxI GGCC 2 cut(s) 126, 301
ApeKI GCWGC 2 cut(s) 355, 536
ApoI RAATTY 1 cut(s) 836
AseI ATTAAT 1 cut(s) 495
AspLEI GCGC 1 cut(s) 798
AspS9I GGNCC 3 cut(s) 109, 126, 181
AvaII GGWCC 2 cut(s) 109, 181
BalI TGGCCA 1 cut(s) 303
BarI GAAGNNNNNNTAC 2 cut(s) 355, 387
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 342, 523
BccI CCATC 3 cut(s) 591, 948, 1033
BceAI ACGGC 2 cut(s) 105, 113
BciT130I CCWGG 2 cut(s) 828, 884
BcoDI GTCTC 3 cut(s) 68, 611, 671
BfaI CTAG 3 cut(s) 714, 1046, 1235
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 4 cut(s) 66, 93, 356, 537
BlsI GCNGC 4 cut(s) 67, 94, 357, 538
Bme1390I CCNGG 2 cut(s) 828, 884
Bme18I GGWCC 2 cut(s) 109, 181
BmgT120I GGNCC 3 cut(s) 109, 126, 181
BmrFI CCNGG 2 cut(s) 828, 884
BmsI GCATC 3 cut(s) 731, 926, 983
BpiI GAAGAC 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 263
BsaAI YACGTR 1 cut(s) 547
BsaHI GRCGYC 2 cut(s) 95, 116
BsaJI CCNNGG 1 cut(s) 826
BsaWI WCCGGW 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 708, 912
Bse1I ACTGG 2 cut(s) 702, 713
Bse3DI GCAATG 3 cut(s) 312, 805, 1174
BseBI CCWGG 2 cut(s) 828, 884
BseDI CCNNGG 1 cut(s) 826
BseGI GGATG 6 cut(s) 516, 602, 746, 959, 974, 1146
BseLI CCNNNNNNNGG 2 cut(s) 708, 912
BseMI GCAATG 3 cut(s) 312, 805, 1174
BseMII CTCAG 3 cut(s) 606, 1068, 1209
BseNI ACTGG 2 cut(s) 702, 713
BseRI GAGGAG 1 cut(s) 86
BseXI GCAGC 2 cut(s) 342, 523
BsgI GTGCAG 1 cut(s) 170
Bsh1285I CGRYCG 1 cut(s) 1127
BshFI GGCC 2 cut(s) 128, 303
BsiEI CGRYCG 1 cut(s) 1127
BsiSI CCGG 2 cut(s) 112, 135
BslFI GGGAC 1 cut(s) 888
BslI CCNNNNNNNGG 2 cut(s) 708, 912
BsmAI GTCTC 3 cut(s) 68, 611, 671
BsmFI GGGAC 1 cut(s) 888
BsnI GGCC 2 cut(s) 128, 303
Bsp1407I TGTACA 1 cut(s) 1090
Bsp143I GATC 4 cut(s) 486, 649, 863, 981
BspACI CCGC 6 cut(s) 65, 92, 257, 332, 430, 1127
BspANI GGCC 2 cut(s) 128, 303
BspCNI CTCAG 3 cut(s) 607, 1067, 1210
BspHI TCATGA 1 cut(s) 673
BspPI GGATC 2 cut(s) 644, 976
BspTI CTTAAG 1 cut(s) 335
BsrDI GCAATG 3 cut(s) 312, 805, 1174
BsrGI TGTACA 1 cut(s) 1090
BsrI ACTGG 2 cut(s) 702, 713
BssECI CCNNGG 1 cut(s) 826
BssMI GATC 4 cut(s) 486, 649, 863, 981
BssNI GRCGYC 2 cut(s) 95, 116
Bst2UI CCWGG 2 cut(s) 828, 884
Bst4CI ACNGT 2 cut(s) 557, 793
Bst6I CTCTTC 1 cut(s) 1194
BstACI GRCGYC 2 cut(s) 95, 116
BstAFI CTTAAG 1 cut(s) 335
BstAPI GCANNNNNTGC 2 cut(s) 511, 557
BstAUI TGTACA 1 cut(s) 1090
BstBAI YACGTR 1 cut(s) 547
BstC8I GCNNGC 2 cut(s) 960, 1065
BstDEI CTNAG 4 cut(s) 615, 1000, 1054, 1218
BstF5I GGATG 6 cut(s) 516, 602, 746, 959, 974, 1146
BstHHI GCGC 1 cut(s) 798
BstKTI GATC 4 cut(s) 489, 652, 866, 984
BstMAI GTCTC 3 cut(s) 68, 611, 671
BstMBI GATC 4 cut(s) 486, 649, 863, 981
BstMCI CGRYCG 1 cut(s) 1127
BstMWI GCNNNNNNNGC 5 cut(s) 65, 377, 511, 557, 611
BstNI CCWGG 2 cut(s) 828, 884
BstNSI RCATGY 1 cut(s) 465
BstSCI CCNGG 2 cut(s) 826, 882
BstV1I GCAGC 2 cut(s) 342, 523
BstV2I GAAGAC 1 cut(s) 418
BsuRI GGCC 2 cut(s) 128, 303
BtgZI GCGATG 1 cut(s) 609
BtsCI GGATG 6 cut(s) 516, 602, 746, 959, 974, 1146
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 4 cut(s) 482, 562, 798, 1074
Cac8I GCNNGC 2 cut(s) 960, 1065
CaiI CAGNNNCTG 1 cut(s) 708
CciI TCATGA 1 cut(s) 673
CfoI GCGC 1 cut(s) 798
Cfr13I GGNCC 3 cut(s) 109, 126, 181
CseI GACGC 2 cut(s) 84, 124
Csp6I GTAC 1 cut(s) 1091
CviAII CATG 4 cut(s) 360, 462, 606, 674
CviQI GTAC 1 cut(s) 1091
DdeI CTNAG 4 cut(s) 615, 1000, 1054, 1218
DpnI GATC 4 cut(s) 488, 651, 865, 983
DpnII GATC 4 cut(s) 486, 649, 863, 981
DraI TTTAAA 1 cut(s) 1213
DraIII CACNNNGTG 1 cut(s) 1069
DrdI GACNNNNNNGTC 2 cut(s) 94, 884
DseDI GACNNNNNNGTC 2 cut(s) 94, 884
EaeI YGGCCR 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 1194
EarI CTCTTC 1 cut(s) 1194
EciI GGCGGA 1 cut(s) 272
Eco47I GGWCC 2 cut(s) 109, 181
EcoO109I RGGNCCY 1 cut(s) 181
EcoRII CCWGG 2 cut(s) 826, 882
FaeI CATG 4 cut(s) 363, 465, 609, 677
FaqI GGGAC 1 cut(s) 888
FatI CATG 4 cut(s) 359, 461, 605, 673
FblI GTMKAC 1 cut(s) 1123
Fnu4HI GCNGC 4 cut(s) 66, 93, 356, 537
FokI GGATG 6 cut(s) 503, 609, 753, 961, 966, 1133
Fsp4HI GCNGC 4 cut(s) 66, 93, 356, 537
FspBI CTAG 3 cut(s) 714, 1046, 1235
FspI TGCGCA 1 cut(s) 797
GlaI GCGC 1 cut(s) 797
GluI GCNGC 4 cut(s) 66, 93, 356, 537
GsuI CTGGAG 1 cut(s) 263
HaeIII GGCC 2 cut(s) 128, 303
HapII CCGG 2 cut(s) 112, 135
HgaI GACGC 2 cut(s) 84, 124
HhaI GCGC 1 cut(s) 798
Hin1I GRCGYC 2 cut(s) 95, 116
Hin1II CATG 4 cut(s) 363, 465, 609, 677
Hin6I GCGC 1 cut(s) 796
HinP1I GCGC 1 cut(s) 796
HincII GTYRAC 1 cut(s) 1124
HindII GTYRAC 1 cut(s) 1124
HindIII AAGCTT 1 cut(s) 369
HpaII CCGG 2 cut(s) 112, 135
Hpy166II GTNNAC 2 cut(s) 1124, 1232
Hpy188I TCNGA 9 cut(s) 197, 211, 385, 665, 781, 896, 1057, 1102, 1219
Hpy188III TCNNGA 7 cut(s) 242, 292, 657, 674, 859, 1030, 1046
Hpy8I GTNNAC 2 cut(s) 1124, 1232
Hpy99I CGWCG 5 cut(s) 85, 88, 91, 100, 134
HpyAV CCTTC 4 cut(s) 172, 241, 595, 663
HpyCH4III ACNGT 2 cut(s) 557, 793
HpyCH4IV ACGT 2 cut(s) 200, 546
HpyCH4V TGCA 6 cut(s) 187, 344, 449, 465, 505, 514
HpyF10VI GCNNNNNNNGC 5 cut(s) 65, 377, 511, 557, 611
HpyF3I CTNAG 4 cut(s) 615, 1000, 1054, 1218
HpySE526I ACGT 2 cut(s) 200, 546
Hsp92I GRCGYC 2 cut(s) 95, 116
Hsp92II CATG 4 cut(s) 363, 465, 609, 677
HspAI GCGC 1 cut(s) 796
Kzo9I GATC 4 cut(s) 486, 649, 863, 981
LmnI GCTCC 3 cut(s) 103, 259, 942
Lsp1109I GCAGC 2 cut(s) 342, 523
LweI GCATC 3 cut(s) 731, 926, 983
MaeI CTAG 3 cut(s) 714, 1046, 1235
MaeII ACGT 2 cut(s) 200, 546
MaeIII GTNAC 3 cut(s) 308, 404, 704
MalI GATC 4 cut(s) 488, 651, 865, 983
MboI GATC 4 cut(s) 486, 649, 863, 981
MboII GAAGA 8 cut(s) 398, 404, 423, 520, 718, 884, 1130, 1181
MfeI CAATTG 1 cut(s) 509
MlsI TGGCCA 1 cut(s) 303
MluCI AATT 3 cut(s) 509, 755, 836
MluNI TGGCCA 1 cut(s) 303
MlyI GAGTC 3 cut(s) 147, 408, 906
MmeI TCCRAC 3 cut(s) 175, 718, 874
MnlI CCTC 8 cut(s) 64, 93, 207, 218, 530, 573, 604, 1095
Mox20I TGGCCA 1 cut(s) 303
MscI TGGCCA 1 cut(s) 303
MseI TTAA 7 cut(s) 11, 252, 336, 495, 942, 948, 1212
MslI CAYNNNNRTG 1 cut(s) 633
Msp20I TGGCCA 1 cut(s) 303
MspCI CTTAAG 1 cut(s) 335
MspI CCGG 2 cut(s) 112, 135
MspR9I CCNGG 2 cut(s) 828, 884
MunI CAATTG 1 cut(s) 509
MvaI CCWGG 2 cut(s) 828, 884
MwoI GCNNNNNNNGC 5 cut(s) 65, 377, 511, 557, 611
NdeII GATC 4 cut(s) 486, 649, 863, 981
NlaIII CATG 4 cut(s) 363, 465, 609, 677
NmuCI GTSAC 1 cut(s) 404
NsbI TGCGCA 1 cut(s) 797
NspI RCATGY 1 cut(s) 465
PagI TCATGA 1 cut(s) 673
PcsI WCGNNNNNNNCGW 2 cut(s) 92, 95
PfeI GAWTC 7 cut(s) 268, 395, 589, 660, 718, 804, 1081
PflMI CCANNNNNTGG 2 cut(s) 708, 912
PkrI GCNGC 4 cut(s) 67, 94, 357, 538
PleI GAGTC 3 cut(s) 146, 408, 905
PpsI GAGTC 3 cut(s) 146, 408, 905
Ppu21I YACGTR 1 cut(s) 547
PpuMI RGGWCCY 1 cut(s) 181
PshBI ATTAAT 1 cut(s) 495
PsiI TTATAA 1 cut(s) 995
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 826, 882
PspGI CCWGG 2 cut(s) 826, 882
PspPI GGNCC 3 cut(s) 109, 126, 181
PspPPI RGGWCCY 1 cut(s) 181
PstNI CAGNNNCTG 1 cut(s) 708
RsaI GTAC 1 cut(s) 1092
RsaNI GTAC 1 cut(s) 1091
RseI CAYNNNNRTG 1 cut(s) 633
SalI GTCGAC 1 cut(s) 1122
SaqAI TTAA 7 cut(s) 11, 252, 336, 495, 942, 948, 1212
SatI GCNGC 4 cut(s) 66, 93, 356, 537
Sau3AI GATC 4 cut(s) 486, 649, 863, 981
Sau96I GGNCC 3 cut(s) 109, 126, 181
SchI GAGTC 3 cut(s) 147, 408, 906
ScrFI CCNGG 2 cut(s) 828, 884
SfaNI GCATC 3 cut(s) 731, 926, 983
SinI GGWCC 2 cut(s) 109, 181
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 3 cut(s) 509, 755, 836
SsiI CCGC 6 cut(s) 65, 92, 257, 332, 430, 1127
SspMI CTAG 3 cut(s) 714, 1046, 1235
StyD4I CCNGG 2 cut(s) 826, 882
TaaI ACNGT 2 cut(s) 557, 793
TaiI ACGT 2 cut(s) 203, 549
TaqI TCGA 4 cut(s) 98, 422, 751, 1123
TasI AATT 3 cut(s) 509, 755, 836
TatI WGTACW 1 cut(s) 1090
TauI GCSGC 2 cut(s) 68, 95
TfiI GAWTC 7 cut(s) 268, 395, 589, 660, 718, 804, 1081
Tru1I TTAA 7 cut(s) 11, 252, 336, 495, 942, 948, 1212
Tru9I TTAA 7 cut(s) 11, 252, 336, 495, 942, 948, 1212
TscAI CASTG 4 cut(s) 489, 562, 798, 1074
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 2 cut(s) 355, 536
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 5 cut(s) 405, 612, 796, 1130, 1163
TspGWI ACGGA 1 cut(s) 1015
TspRI CASTG 4 cut(s) 489, 562, 798, 1074
Van91I CCANNNNNTGG 2 cut(s) 708, 912
Vha464I CTTAAG 1 cut(s) 335
VpaK11BI GGWCC 2 cut(s) 109, 181
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 1 cut(s) 836
XbaI TCTAGA 1 cut(s) 1045
XceI RCATGY 1 cut(s) 465
XcmI CCANNNNNNNNNTGG 1 cut(s) 824
XmiI GTMKAC 1 cut(s) 1123
XspI CTAG 3 cut(s) 714, 1046, 1235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.