Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Forward (+)

7828976 .. 7830898

Gene Structure 1923 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGTCGGATATCGAGATTTTGTCTGAAGCTGATGCGTCTATGCGGAAGCTACGCATTTTCGGAATTGATGATCGCGAAGATGAGAATGGGAGAAGAAGAATCAAAGATGTTGAAGTTTATGTTCCGATTGTGTGTGGATCGATTGCTTTTTATCTTGGAAAGAAAGCCACAGAATATCGAACACATAAGTGGACTGTTTATGTACGTGGAGCTACGAATGAGGATCTTGGTGTGGTTATCAAGCGGGTTATCTTCCATTTGCATCCAAGTTTTAATAATCCAACTAGAGTGGTTGATGCTCCTCCCTTTGCATTGTCTGAGTGTGGTTGGGGAGAATTCAAAATCGACATAACCGTTTTCTTCCATACCGATGTCTGTGAAAAGAAGTTGGAGTTGTCTCACGTCTTAAAGCTGAACCCGGAGAATGCATATGGTCCTATTCCTAAGTCTATTAAGATACCCGTTGTCGCTGAGTCTTACAATGAAGTTGTCTTTCCAGACCCTTTTGAGAGTTTTGTCGCCCGTGTTCATAATCACCCGGCTATACAGATCTCTAACATCCCAGATGGTTTGAACCTGCCTCCTCCAGGTGCATTCTTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

202

Amino Acids

22.86

Weight (kDa)

5.81

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	61 - 140	8.1e-30	YEATS family
pYEATS	PF20305	64 - 131	2.2e-12	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	588
AccII	CGCG	1 cut(s)	78
AciI	CCGC	2 cut(s)	46, 247
AclWI	GGATC	2 cut(s)	148, 234
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	116, 343, 577
AjiI	CACGTC	1 cut(s)	406
AjnI	CCWGG	1 cut(s)	589
AleI	CACNNNNGTG	1 cut(s)	190
AluBI	AGCT	4 cut(s)	32, 52, 215, 415
AluI	AGCT	4 cut(s)	32, 52, 215, 415
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	148, 234
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	437
AsuC2I	CCSGG	2 cut(s)	422, 542
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	437
BccI	CCATC	1 cut(s)	563
BciT130I	CCWGG	1 cut(s)	591
BcnI	CCSGG	2 cut(s)	422, 542
BcoDI	GTCTC	1 cut(s)	405
BfaI	CTAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	588
BglII	AGATCT	1 cut(s)	552
Bme1390I	CCNGG	3 cut(s)	422, 542, 591
Bme18I	GGWCC	1 cut(s)	437
BmgBI	CACGTC	1 cut(s)	406
BmgT120I	GGNCC	1 cut(s)	437
BmrFI	CCNGG	3 cut(s)	422, 542, 591
BmsI	GCATC	3 cut(s)	25, 274, 289
BpmI	CTGGAG	1 cut(s)	573
BpuMI	CCSGG	2 cut(s)	422, 542
Bsa29I	ATCGAT	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	209
Bsc4I	CCNNNNNNNGG	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	591
BseCI	ATCGAT	1 cut(s)	143
BseGI	GGATG	2 cut(s)	265, 561
BseLI	CCNNNNNNNGG	1 cut(s)	590
BseMII	CTCAG	2 cut(s)	312, 465
BseRI	GAGGAG	2 cut(s)	294, 576
Bsh1236I	CGCG	1 cut(s)	78
BshVI	ATCGAT	1 cut(s)	143
BsiSI	CCGG	2 cut(s)	422, 542
BslI	CCNNNNNNNGG	1 cut(s)	590
BsmAI	GTCTC	1 cut(s)	405
BsmI	GAATGC	2 cut(s)	433, 596
Bsp143I	GATC	4 cut(s)	73, 140, 226, 552
Bsp68I	TCGCGA	1 cut(s)	78
BspACI	CCGC	2 cut(s)	46, 247
BspCNI	CTCAG	2 cut(s)	313, 466
BspDI	ATCGAT	1 cut(s)	143
BspFNI	CGCG	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	588
BspPI	GGATC	2 cut(s)	148, 234
BssMI	GATC	4 cut(s)	73, 140, 226, 552
Bst2UI	CCWGG	1 cut(s)	591
Bst4CI	ACNGT	2 cut(s)	199, 358
BstBAI	YACGTR	1 cut(s)	209
BstDEI	CTNAG	3 cut(s)	321, 447, 474
BstENI	CCTNNNNNAGG	1 cut(s)	588
BstF5I	GGATG	2 cut(s)	265, 561
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	4 cut(s)	76, 143, 229, 555
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	4 cut(s)	73, 140, 226, 552
BstNI	CCWGG	1 cut(s)	591
BstSCI	CCNGG	3 cut(s)	420, 540, 589
BstUI	CGCG	1 cut(s)	78
BstX2I	RGATCY	2 cut(s)	226, 552
BstYI	RGATCY	2 cut(s)	226, 552
Bsu15I	ATCGAT	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	143
BtrI	CACGTC	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	265, 561
BtuMI	TCGCGA	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	588
Cfr13I	GGNCC	1 cut(s)	437
ClaI	ATCGAT	1 cut(s)	143
CseI	GACGC	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	206
CspCI	CAANNNNNGTGG	2 cut(s)	273, 308
CviJI	RGCY	6 cut(s)	32, 52, 170, 215, 415, 545
CviKI_1	RGCY	6 cut(s)	32, 52, 170, 215, 415, 545
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	3 cut(s)	321, 447, 474
DpnI	GATC	4 cut(s)	75, 142, 228, 554
DpnII	GATC	4 cut(s)	73, 140, 226, 552
Eco32I	GATATC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	48
EcoNI	CCTNNNNNAGG	1 cut(s)	588
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	589
EcoRV	GATATC	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	433
FauI	CCCGC	1 cut(s)	240
FauNDI	CATATG	1 cut(s)	433
FokI	GGATG	2 cut(s)	252, 548
FspBI	CTAG	1 cut(s)	288
GsuI	CTGGAG	1 cut(s)	573
HapII	CCGG	2 cut(s)	422, 542
HgaI	GACGC	1 cut(s)	27
HinfI	GANTC	3 cut(s)	5, 102, 476
HpaII	CCGG	2 cut(s)	422, 542
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188I	TCNGA	6 cut(s)	10, 28, 65, 129, 322, 608
Hpy188III	TCNNGA	3 cut(s)	16, 77, 500
Hpy8I	GTNNAC	1 cut(s)	195
HpyCH4III	ACNGT	2 cut(s)	199, 358
HpyCH4IV	ACGT	2 cut(s)	208, 405
HpyCH4V	TGCA	4 cut(s)	265, 314, 431, 596
HpyF3I	CTNAG	3 cut(s)	321, 447, 474
HpySE526I	ACGT	2 cut(s)	208, 405
Kzo9I	GATC	4 cut(s)	73, 140, 226, 552
LmnI	GCTCC	2 cut(s)	212, 307
LpnPI	CCDG	7 cut(s)	435, 513, 555, 576, 579, 593, 603
LweI	GCATC	3 cut(s)	25, 274, 289
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	2 cut(s)	208, 405
MalI	GATC	4 cut(s)	75, 142, 228, 554
MboI	GATC	4 cut(s)	73, 140, 226, 552
MboII	GAAGA	5 cut(s)	92, 108, 111, 247, 355
MflI	RGATCY	2 cut(s)	226, 552
MluCI	AATT	2 cut(s)	66, 338
MlyI	GAGTC	2 cut(s)	14, 485
MmeI	TCCRAC	2 cut(s)	308, 372
MnlI	CCTC	4 cut(s)	217, 315, 594, 597
Mph1103I	ATGCAT	1 cut(s)	433
MseI	TTAA	3 cut(s)	276, 410, 456
MslI	CAYNNNNRTG	2 cut(s)	190, 372
MspI	CCGG	2 cut(s)	422, 542
MspR9I	CCNGG	3 cut(s)	422, 542, 591
Mva1269I	GAATGC	2 cut(s)	433, 596
MvaI	CCWGG	1 cut(s)	591
MvnI	CGCG	1 cut(s)	78
NciI	CCSGG	2 cut(s)	422, 542
NdeI	CATATG	1 cut(s)	433
NdeII	GATC	4 cut(s)	73, 140, 226, 552
NruI	TCGCGA	1 cut(s)	78
NsiI	ATGCAT	1 cut(s)	433
OliI	CACNNNNGTG	1 cut(s)	190
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PctI	GAATGC	2 cut(s)	433, 596
PfeI	GAWTC	1 cut(s)	102
PleI	GAGTC	2 cut(s)	13, 484
PpsI	GAGTC	2 cut(s)	13, 484
Ppu21I	YACGTR	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	589
PspGI	CCWGG	1 cut(s)	589
PspPI	GGNCC	1 cut(s)	437
PsuI	RGATCY	2 cut(s)	226, 552
RruI	TCGCGA	1 cut(s)	78
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	2 cut(s)	190, 372
SaqAI	TTAA	3 cut(s)	276, 410, 456
Sau3AI	GATC	4 cut(s)	73, 140, 226, 552
Sau96I	GGNCC	1 cut(s)	437
SchI	GAGTC	2 cut(s)	14, 485
ScrFI	CCNGG	3 cut(s)	422, 542, 591
SetI	ASST	8 cut(s)	34, 54, 211, 217, 408, 417, 582, 595
SfaNI	GCATC	3 cut(s)	25, 274, 289
SinI	GGWCC	1 cut(s)	437
SmiMI	CAYNNNNRTG	2 cut(s)	190, 372
Sse9I	AATT	2 cut(s)	66, 338
SsiI	CCGC	2 cut(s)	46, 247
SspMI	CTAG	1 cut(s)	288
StyD4I	CCNGG	3 cut(s)	420, 540, 589
TaaI	ACNGT	2 cut(s)	199, 358
TaiI	ACGT	2 cut(s)	211, 408
TaqI	TCGA	4 cut(s)	15, 143, 181, 348
TasI	AATT	2 cut(s)	66, 338
TfiI	GAWTC	1 cut(s)	102
Tru1I	TTAA	3 cut(s)	276, 410, 456
Tru9I	TTAA	3 cut(s)	276, 410, 456
TspDTI	ATGAA	2 cut(s)	501, 521
VpaK11BI	GGWCC	1 cut(s)	437
XagI	CCTNNNNNAGG	1 cut(s)	588
XapI	RAATTY	1 cut(s)	338
XspI	CTAG	1 cut(s)	288
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.