Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Forward (+)

7298843 .. 7299516

Gene Structure 674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g10540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGAGAGTGATTGATTCGCCCCCATTTGAGTTAACGGAATGTGGTTGGGGTGAATTTGAAATTTCCATCGGTCTGTTCTTCCACAATGATGTCTGTGAGAGACAATTAGACTTGTATCACCATTTGAAGTTATATACTGAAGATGAATCTGGTCCCCAGTCAACCAAGAAACCTGTTGTTGTGGAGTCTTACAATGAAATAGCCTGTTTTGCTCGTGTGCAGAACCATCCAGCTGTTATAGTGCCCTGTTTACCTGCTGATTTCAACTTGCCTAATCCTGGAGGGAACACGAAGGATCATACACTTGGTCAGTGGTTCTTGAATTTTTCAGAGGCAGATGAGCTCTTAAAACTTGCAGTGGCTCGTCAAGAGGTTAGAATTAGTAGATGTGTTCTCTTTCTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

136

Amino Acids

15.41

Weight (kDa)

4.99

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	262
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	3 cut(s)	53, 60, 322
AcuI	CTGAAG	1 cut(s)	159
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgsI	TTSAA	4 cut(s)	59, 127, 265, 322
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	2 cut(s)	233, 343
AluI	AGCT	2 cut(s)	233, 343
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	1 cut(s)	303
ApoI	RAATTY	3 cut(s)	53, 60, 322
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	2 cut(s)	62, 110
AvaII	GGWCC	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	345
BauI	CACGAG	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	345
BccI	CCATC	2 cut(s)	74, 234
BciT130I	CCWGG	1 cut(s)	279
BcoDI	GTCTC	1 cut(s)	94
BfuAI	ACCTGC	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	279
Bme18I	GGWCC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	279
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse1I	ACTGG	1 cut(s)	157
BseBI	CCWGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	138
Bsp1286I	GDGCHC	2 cut(s)	246, 345
Bsp143I	GATC	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	154
BspMI	ACCTGC	1 cut(s)	262
BspPI	GGATC	1 cut(s)	303
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	1 cut(s)	295
BssSI	CACGAG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	213
Bst2UI	CCWGG	1 cut(s)	279
BstF5I	GGATG	1 cut(s)	226
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	1 cut(s)	279
BstSCI	CCNGG	1 cut(s)	277
BstSLI	GKGCMC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	226
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	2 cut(s)	317, 363
BveI	ACCTGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	152
CviJI	RGCY	4 cut(s)	203, 233, 343, 362
CviKI_1	RGCY	4 cut(s)	203, 233, 343, 362
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	152
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	159
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	345
FaiI	YATR	4 cut(s)	133, 135, 239, 300
FaqI	GGGAC	1 cut(s)	138
FokI	GGATG	1 cut(s)	213
FriOI	GRGCYC	1 cut(s)	345
GsuI	CTGGAG	1 cut(s)	300
HincII	GTYRAC	2 cut(s)	33, 162
HindII	GTYRAC	2 cut(s)	33, 162
HinfI	GANTC	3 cut(s)	14, 146, 185
HpaI	GTTAAC	1 cut(s)	33
HphI	GGTGA	2 cut(s)	62, 110
Hpy166II	GTNNAC	3 cut(s)	33, 162, 251
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	2 cut(s)	319, 368
Hpy8I	GTNNAC	3 cut(s)	33, 162, 251
HpyAV	CCTTC	1 cut(s)	286
HpyCH4V	TGCA	2 cut(s)	220, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
KspAI	GTTAAC	1 cut(s)	33
Kzo9I	GATC	1 cut(s)	295
LpnPI	CCDG	9 cut(s)	135, 170, 186, 217, 243, 259, 264, 267, 291
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MboII	GAAGA	2 cut(s)	70, 152
MhlI	GDGCHC	2 cut(s)	246, 345
MluCI	AATT	5 cut(s)	53, 60, 104, 322, 378
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	3 cut(s)	275, 325, 364
MseI	TTAA	3 cut(s)	32, 347, 406
MslI	CAYNNNNRTG	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	295
NlaIV	GGNNCC	1 cut(s)	154
PfeI	GAWTC	2 cut(s)	14, 146
PfoI	TCCNGGA	1 cut(s)	277
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	87
SacI	GAGCTC	1 cut(s)	345
SaqAI	TTAA	3 cut(s)	32, 347, 406
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	2 cut(s)	246, 345
SetI	ASST	5 cut(s)	175, 235, 256, 345, 375
SinI	GGWCC	1 cut(s)	152
SmiMI	CAYNNNNRTG	1 cut(s)	87
Sse9I	AATT	5 cut(s)	53, 60, 104, 322, 378
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	277
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	5 cut(s)	53, 60, 104, 322, 378
TfiI	GAWTC	2 cut(s)	14, 146
Tru1I	TTAA	3 cut(s)	32, 347, 406
Tru9I	TTAA	3 cut(s)	32, 347, 406
TscAI	CASTG	2 cut(s)	317, 363
TspDTI	ATGAA	2 cut(s)	159, 210
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	2 cut(s)	317, 363
VpaK11BI	GGWCC	1 cut(s)	152
XapI	RAATTY	3 cut(s)	53, 60, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.