Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Forward (+)

11415549 .. 11418935

Gene Structure 3387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG133900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAGAGTGATTGAATCGCCCCCATTTGAGTTAACAGAATGTGGTTGGGGTGAATTTGAAATTGCCATCAGCCTGTTTTTCCACAATGATATCTGTGAGAAACAGTTGGACTTGTATCACCATTTGAAGCTATATACTGAAGATGAATCAGGCCCCCAGTCGACCAAGAAACCTGTTGTTATGGAATCTTACAATGAAATAGTTTTTCCAGACCCTTCCGAGGCATTTTTTGCTCGTGTGCAAAACCATCCAGCTGTCATAGTTCCCCGTTTGCCTGCCGGGTTTAACTTGCCTAATCCTGGTAAATTTCTTGTTTCAATGGTCTTGGAACCGGAGTTTACATTGATTTTGATCTTCCTATGTCGATTTGTTTGTGCAGTTATTAATGATAACATGAATGAAAACAAACGCGGAGACACGAAGGATCATCCTCTTAGTCAGTGGTTCTTGAACTTTTCAGAGGCAGATGAACTCCTAAAACTTGCAGCAGCTCGCCAAGAGGTTCAAGCCCACATTGTTAACATGAGAAGAAAACTGAGCTTGATGGAAGGGGTGCCCCAGCTGTCCAAACCACCCTCTGGATTTGAATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

198

Amino Acids

22.64

Weight (kDa)

5.15

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	2 - 45	5.6e-13	YEATS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	553
AccB7I	CCANNNNNTGG	1 cut(s)	578
AccI	GTMKAC	1 cut(s)	161
AccII	CGCG	1 cut(s)	411
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	53, 305
AcuI	CTGAAG	1 cut(s)	159
AfiI	CCNNNNNNNGG	3 cut(s)	220, 299, 578
AgsI	TTSAA	7 cut(s)	14, 59, 127, 318, 451, 506, 587
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	5 cut(s)	130, 254, 491, 540, 562
AluI	AGCT	5 cut(s)	130, 254, 491, 540, 562
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	432
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	2 cut(s)	485, 488
ApoI	RAATTY	2 cut(s)	53, 305
AseI	ATTAAT	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	152
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	62, 110
BaeGI	GKGCMC	1 cut(s)	558
BanI	GGYRCC	1 cut(s)	553
BauI	CACGAG	1 cut(s)	234
BbvI	GCAGC	2 cut(s)	497, 500
BccI	CCATC	3 cut(s)	74, 255, 538
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	486, 489
BlsI	GCNGC	2 cut(s)	487, 490
Bme1390I	CCNGG	2 cut(s)	280, 300
BmgT120I	GGNCC	1 cut(s)	152
BmiI	GGNNCC	3 cut(s)	154, 330, 555
BmrFI	CCNGG	2 cut(s)	280, 300
BmrI	ACTGGG	1 cut(s)	151
BmuI	ACTGGG	1 cut(s)	151
BpuMI	CCSGG	1 cut(s)	280
BsaBI	GATNNNNATC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	219
BsaWI	WCCGGW	1 cut(s)	331
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 299, 578
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	1 cut(s)	219
BseGI	GGATG	2 cut(s)	247, 427
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	3 cut(s)	220, 299, 578
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	558
BseXI	GCAGC	2 cut(s)	497, 500
BseYI	CCCAGC	1 cut(s)	558
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	1 cut(s)	411
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	553
BsiSI	CCGG	2 cut(s)	279, 332
BslI	CCNNNNNNNGG	3 cut(s)	220, 299, 578
BsmAI	GTCTC	1 cut(s)	408
BsnI	GGCC	1 cut(s)	153
Bsp1286I	GDGCHC	1 cut(s)	558
Bsp143I	GATC	2 cut(s)	351, 424
BspACI	CCGC	1 cut(s)	411
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	528
BspFNI	CGCG	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	154, 330, 555
BspPI	GGATC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	351, 424
BssSI	CACGAG	1 cut(s)	234
Bst2BI	CACGAG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	276, 493
BstDEI	CTNAG	2 cut(s)	434, 536
BstF5I	GGATG	2 cut(s)	247, 427
BstFNI	CGCG	1 cut(s)	411
BstKTI	GATC	2 cut(s)	354, 427
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	2 cut(s)	351, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	230
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	278, 298
BstSLI	GKGCMC	1 cut(s)	558
BstUI	CGCG	1 cut(s)	411
BstV1I	GCAGC	2 cut(s)	497, 500
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	2 cut(s)	247, 427
BtsIMutI	CAGTG	1 cut(s)	446
Cac8I	GCNNGC	2 cut(s)	276, 493
Cfr13I	GGNCC	1 cut(s)	152
CviAII	CATG	3 cut(s)	394, 523, 594
CviJI	RGCY	8 cut(s)	72, 130, 153, 254, 491, 509, 540, 562
CviKI_1	RGCY	8 cut(s)	72, 130, 153, 254, 491, 509, 540, 562
DdeI	CTNAG	2 cut(s)	434, 536
DpnI	GATC	2 cut(s)	353, 426
DpnII	GATC	2 cut(s)	351, 424
Eco32I	GATATC	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	159
EcoO109I	RGGNCCY	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	595
FaeI	CATG	3 cut(s)	397, 526, 597
FaiI	YATR	9 cut(s)	133, 135, 182, 260, 361, 395, 524, 591, 595
FatI	CATG	3 cut(s)	393, 522, 593
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	2 cut(s)	486, 489
FokI	GGATG	2 cut(s)	234, 414
Fsp4HI	GCNGC	2 cut(s)	486, 489
GluI	GCNGC	2 cut(s)	486, 489
GsaI	CCCAGC	1 cut(s)	562
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	2 cut(s)	279, 332
Hin1II	CATG	3 cut(s)	397, 526, 597
HincII	GTYRAC	3 cut(s)	33, 162, 520
HindII	GTYRAC	3 cut(s)	33, 162, 520
HinfI	GANTC	3 cut(s)	14, 146, 185
HpaI	GTTAAC	2 cut(s)	33, 520
HpaII	CCGG	2 cut(s)	279, 332
HphI	GGTGA	2 cut(s)	62, 110
Hpy166II	GTNNAC	4 cut(s)	33, 162, 339, 520
Hpy188I	TCNGA	2 cut(s)	220, 460
Hpy188III	TCNNGA	3 cut(s)	209, 448, 579
Hpy8I	GTNNAC	4 cut(s)	33, 162, 339, 520
HpyAV	CCTTC	3 cut(s)	225, 415, 542
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	4 cut(s)	241, 377, 485, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	230
HpyF3I	CTNAG	2 cut(s)	434, 536
Hsp92II	CATG	3 cut(s)	397, 526, 597
KspAI	GTTAAC	2 cut(s)	33, 520
Kzo9I	GATC	2 cut(s)	351, 424
Lsp1109I	GCAGC	2 cut(s)	497, 500
MalI	GATC	2 cut(s)	353, 426
MboI	GATC	2 cut(s)	351, 424
MboII	GAAGA	3 cut(s)	152, 346, 540
MhlI	GDGCHC	1 cut(s)	558
MluCI	AATT	3 cut(s)	53, 60, 305
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	5 cut(s)	214, 441, 454, 493, 586
Mph1103I	ATGCAT	1 cut(s)	595
MseI	TTAA	4 cut(s)	32, 285, 384, 519
MspA1I	CMGCKG	2 cut(s)	254, 562
MspI	CCGG	2 cut(s)	279, 332
MspR9I	CCNGG	2 cut(s)	280, 300
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	411
MwoI	GCNNNNNNNGC	1 cut(s)	230
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	2 cut(s)	351, 424
NlaIII	CATG	3 cut(s)	397, 526, 597
NlaIV	GGNNCC	3 cut(s)	154, 330, 555
NsiI	ATGCAT	1 cut(s)	595
PfeI	GAWTC	3 cut(s)	14, 146, 185
PflMI	CCANNNNNTGG	1 cut(s)	578
PkrI	GCNGC	2 cut(s)	487, 490
PshBI	ATTAAT	1 cut(s)	384
Psp6I	CCWGG	1 cut(s)	298
PspFI	CCCAGC	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	154, 330, 555
PspPI	GGNCC	1 cut(s)	152
PvuII	CAGCTG	2 cut(s)	254, 562
SalI	GTCGAC	1 cut(s)	160
SaqAI	TTAA	4 cut(s)	32, 285, 384, 519
SatI	GCNGC	2 cut(s)	486, 489
Sau3AI	GATC	2 cut(s)	351, 424
Sau96I	GGNCC	1 cut(s)	152
ScrFI	CCNGG	2 cut(s)	280, 300
SduI	GDGCHC	1 cut(s)	558
SetI	ASST	7 cut(s)	132, 175, 256, 493, 504, 542, 564
Sse9I	AATT	3 cut(s)	53, 60, 305
SsiI	CCGC	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	278, 298
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	161, 364
TasI	AATT	3 cut(s)	53, 60, 305
TfiI	GAWTC	3 cut(s)	14, 146, 185
Tru1I	TTAA	4 cut(s)	32, 285, 384, 519
Tru9I	TTAA	4 cut(s)	32, 285, 384, 519
TscAI	CASTG	1 cut(s)	446
TseI	GCWGC	2 cut(s)	485, 488
TspDTI	ATGAA	5 cut(s)	159, 210, 410, 414, 483
TspRI	CASTG	1 cut(s)	446
Van91I	CCANNNNNTGG	1 cut(s)	578
VspI	ATTAAT	1 cut(s)	384
XapI	RAATTY	2 cut(s)	53, 305
XmiI	GTMKAC	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.