Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Forward (+)

10787865 .. 10792560

Gene Structure 4696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1133500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCAGTGAGAAAATCAGGTGAAACTGAACCGCCTCAGCCGGAGGAGGGTGGCGGGTCCGCCCAACTATCCCAGCCAGTCCGAACTTCAAATCCTGCAGAAGATGGAGACAAGAAGAGCACAAGCAGGAGACTGAAGGATGTTGATATATGTGTGCCAATTGTATACGGGACAGTTGCGTTCTACCTCGGTAGGAAGGCCAGTGAGTCTCAGTCACATAAGTGGACGGTTTATGTTCGTGGGGCAACAAACGAGGACCTTGGGGTGGTGGTAAAGCGAGTTATATTTCAATTGCATCCTAGTTTCAATAATCCTATGAGAGTGATTGATTCGCCCCCATTTGAGTTAACGGAATGTGGTTGGGGTGAATTTGAAATTTCCATCAGTCTGTTCTTCCACAATGATGTCTGTGAGAGACAGTTAGACTTGTATCACCATTTAAAGTTATATACTGAAGATGAATCTGGGCCCCAGTCAACTAAGAAACCTGTTGTTGTGGAGTCTTACGATGAAATAGTTTTCCCCGATCCTTTAGAGGCCTGTTTTGCTCGTGTGCAGAACCATCCAGCTGTTATAGTGCCCCGTTTACCTGCTGGTTTCAACTTGCCTAATCCTGTGCCGATTGATCAGAAGAATGACAGCGAACGAGGGGACACGAAGGATCATCCCCTTGGTCAGTGGTTCTTGAATTTTTCAGAGGCAGATGAGCTCTTAAAACTTGCAGCGGCTCGTCAAGAGGTTTTGAACTTCTACTTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

254

Amino Acids

28.44

Weight (kDa)

5.13

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	71 - 150	7.4e-30	YEATS family
pYEATS	PF20305	74 - 135	7.7e-11	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	598
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	4 cut(s)	32, 54, 60, 725
AclWI	GGATC	2 cut(s)	521, 669
AcsI	RAATTY	3 cut(s)	368, 375, 688
AcuI	CTGAAG	2 cut(s)	155, 474
AfiI	CCNNNNNNNGG	2 cut(s)	47, 265
AgsI	TTSAA	7 cut(s)	90, 290, 307, 374, 601, 688, 745
AjuI	GAANNNNNNNTTGG	1 cut(s)	737
AleI	CACNNNNGTG	1 cut(s)	220
AloI	GAACNNNNNNTCC	2 cut(s)	76, 108
AluBI	AGCT	2 cut(s)	569, 709
AluI	AGCT	2 cut(s)	569, 709
Alw21I	GWGCWC	2 cut(s)	122, 711
Alw26I	GTCTC	4 cut(s)	102, 124, 213, 409
AlwI	GGATC	2 cut(s)	521, 669
AoxI	GGCC	3 cut(s)	198, 467, 537
ApaI	GGGCCC	1 cut(s)	471
ApeKI	GCWGC	1 cut(s)	722
ApoI	RAATTY	3 cut(s)	368, 375, 688
AspS9I	GGNCC	4 cut(s)	57, 256, 467, 468
AsuHPI	GGTGA	3 cut(s)	32, 377, 425
AvaII	GGWCC	2 cut(s)	57, 256
BaeGI	GKGCMC	2 cut(s)	471, 582
BanII	GRGCYC	2 cut(s)	471, 711
BauI	CACGAG	1 cut(s)	549
Bbv12I	GWGCWC	2 cut(s)	122, 711
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	1 cut(s)	734
BccI	CCATC	3 cut(s)	98, 389, 570
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	4 cut(s)	102, 124, 213, 409
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	598
BisI	GCNGC	2 cut(s)	723, 726
BlsI	GCNGC	2 cut(s)	724, 727
Bme18I	GGWCC	2 cut(s)	57, 256
BmgT120I	GGNCC	4 cut(s)	57, 256, 467, 468
BmiI	GGNNCC	3 cut(s)	58, 469, 470
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	466
Bpu10I	CCTNAGC	1 cut(s)	36
BsaJI	CCNNGG	3 cut(s)	187, 259, 670
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 265
Bse1I	ACTGG	3 cut(s)	77, 201, 472
BseDI	CCNNGG	3 cut(s)	187, 259, 670
BseGI	GGATG	4 cut(s)	145, 295, 562, 664
BseLI	CCNNNNNNNGG	2 cut(s)	47, 265
BseMII	CTCAG	2 cut(s)	50, 224
BseNI	ACTGG	3 cut(s)	77, 201, 472
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	2 cut(s)	471, 582
BseXI	GCAGC	1 cut(s)	734
BseYI	CCCAGC	1 cut(s)	72
BsgI	GTGCAG	1 cut(s)	575
BshFI	GGCC	3 cut(s)	200, 469, 539
BsiHKAI	GWGCWC	2 cut(s)	122, 711
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	184, 665
BslI	CCNNNNNNNGG	2 cut(s)	47, 265
BsmAI	GTCTC	4 cut(s)	102, 124, 213, 409
BsmFI	GGGAC	2 cut(s)	184, 665
BsnI	GGCC	3 cut(s)	200, 469, 539
Bsp120I	GGGCCC	1 cut(s)	467
Bsp1286I	GDGCHC	4 cut(s)	122, 471, 582, 711
Bsp143I	GATC	3 cut(s)	526, 625, 661
BspACI	CCGC	4 cut(s)	32, 54, 60, 725
BspANI	GGCC	3 cut(s)	200, 469, 539
BspCNI	CTCAG	2 cut(s)	49, 223
BspLI	GGNNCC	3 cut(s)	58, 469, 470
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	2 cut(s)	521, 669
BspQI	GCTCTTC	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	77, 201, 472
BssECI	CCNNGG	3 cut(s)	187, 259, 670
BssMI	GATC	3 cut(s)	526, 625, 661
BssNAI	GTATAC	1 cut(s)	166
BssSI	CACGAG	1 cut(s)	549
BssT1I	CCWWGG	2 cut(s)	259, 670
Bst1107I	GTATAC	1 cut(s)	166
Bst2BI	CACGAG	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	175, 229, 420
Bst6I	CTCTTC	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	36, 210, 480
BstF5I	GGATG	4 cut(s)	145, 295, 562, 664
BstKTI	GATC	3 cut(s)	529, 628, 664
BstMAI	GTCTC	4 cut(s)	102, 124, 213, 409
BstMBI	GATC	3 cut(s)	526, 625, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	96
BstSLI	GKGCMC	2 cut(s)	471, 582
BstV1I	GCAGC	1 cut(s)	734
BstZ17I	GTATAC	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	200, 469, 539
BtsCI	GGATG	4 cut(s)	145, 295, 562, 664
BtsIMutI	CAGTG	3 cut(s)	12, 208, 683
BveI	ACCTGC	1 cut(s)	598
Cfr13I	GGNCC	4 cut(s)	57, 256, 467, 468
CviJI	RGCY	8 cut(s)	40, 76, 200, 469, 539, 569, 709, 728
CviKI_1	RGCY	8 cut(s)	40, 76, 200, 469, 539, 569, 709, 728
DdeI	CTNAG	3 cut(s)	36, 210, 480
DpnI	GATC	3 cut(s)	528, 627, 663
DpnII	GATC	3 cut(s)	526, 625, 661
DraI	TTTAAA	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	709
Eco130I	CCWWGG	2 cut(s)	259, 670
Eco147I	AGGCCT	1 cut(s)	539
Eco24I	GRGCYC	2 cut(s)	471, 711
Eco47I	GGWCC	2 cut(s)	57, 256
Eco53kI	GAGCTC	1 cut(s)	709
Eco57I	CTGAAG	2 cut(s)	155, 474
EcoICRI	GAGCTC	1 cut(s)	709
EcoO109I	RGGNCCY	2 cut(s)	256, 468
EcoT14I	CCWWGG	2 cut(s)	259, 670
EcoT38I	GRGCYC	2 cut(s)	471, 711
ErhI	CCWWGG	2 cut(s)	259, 670
FaqI	GGGAC	2 cut(s)	184, 665
FauI	CCCGC	1 cut(s)	47
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	2 cut(s)	723, 726
FokI	GGATG	4 cut(s)	152, 282, 549, 651
FriOI	GRGCYC	2 cut(s)	471, 711
Fsp4HI	GCNGC	2 cut(s)	723, 726
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	2 cut(s)	723, 726
GsaI	CCCAGC	1 cut(s)	76
HaeIII	GGCC	3 cut(s)	200, 469, 539
HapII	CCGG	1 cut(s)	41
HincII	GTYRAC	2 cut(s)	348, 477
HindII	GTYRAC	2 cut(s)	348, 477
HinfI	GANTC	4 cut(s)	206, 329, 461, 500
HpaI	GTTAAC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	3 cut(s)	32, 377, 425
Hpy166II	GTNNAC	5 cut(s)	166, 225, 348, 477, 587
Hpy188I	TCNGA	4 cut(s)	83, 630, 697, 761
Hpy188III	TCNNGA	2 cut(s)	685, 734
Hpy8I	GTNNAC	5 cut(s)	166, 225, 348, 477, 587
HpyAV	CCTTC	3 cut(s)	130, 190, 652
HpyCH4III	ACNGT	3 cut(s)	175, 229, 420
HpyCH4V	TGCA	4 cut(s)	98, 295, 556, 722
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	3 cut(s)	36, 210, 480
Ksp22I	TGATCA	1 cut(s)	625
KspAI	GTTAAC	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	526, 625, 661
LguI	GCTCTTC	1 cut(s)	110
Lsp1109I	GCAGC	1 cut(s)	734
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	213
MalI	GATC	3 cut(s)	528, 627, 663
MboI	GATC	3 cut(s)	526, 625, 661
MboII	GAAGA	5 cut(s)	113, 127, 385, 467, 643
MfeI	CAATTG	2 cut(s)	159, 290
MhlI	GDGCHC	4 cut(s)	122, 471, 582, 711
MluCI	AATT	5 cut(s)	159, 290, 368, 375, 688
MlyI	GAGTC	2 cut(s)	215, 509
MnlI	CCTC	9 cut(s)	37, 40, 45, 197, 247, 529, 641, 691, 730
MseI	TTAA	3 cut(s)	347, 440, 713
MslI	CAYNNNNRTG	2 cut(s)	220, 402
MspA1I	CMGCKG	2 cut(s)	569, 725
MspI	CCGG	1 cut(s)	41
MunI	CAATTG	2 cut(s)	159, 290
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	3 cut(s)	526, 625, 661
NlaIV	GGNNCC	3 cut(s)	58, 469, 470
NmuCI	GTSAC	1 cut(s)	213
OliI	CACNNNNGTG	1 cut(s)	220
PceI	AGGCCT	1 cut(s)	539
PciSI	GCTCTTC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	329, 461
PkrI	GCNGC	2 cut(s)	724, 727
PleI	GAGTC	2 cut(s)	214, 508
PpsI	GAGTC	2 cut(s)	214, 508
PpuMI	RGGWCCY	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	72
PspN4I	GGNNCC	3 cut(s)	58, 469, 470
PspOMI	GGGCCC	1 cut(s)	467
PspPI	GGNCC	4 cut(s)	57, 256, 467, 468
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	569
RseI	CAYNNNNRTG	2 cut(s)	220, 402
SacI	GAGCTC	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	347, 440, 713
SatI	GCNGC	2 cut(s)	723, 726
Sau3AI	GATC	3 cut(s)	526, 625, 661
Sau96I	GGNCC	4 cut(s)	57, 256, 467, 468
SchI	GAGTC	2 cut(s)	215, 509
SduI	GDGCHC	4 cut(s)	122, 471, 582, 711
SetI	ASST	8 cut(s)	22, 189, 261, 490, 571, 592, 711, 741
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	96
SinI	GGWCC	2 cut(s)	57, 256
SmiMI	CAYNNNNRTG	2 cut(s)	220, 402
Sse9I	AATT	5 cut(s)	159, 290, 368, 375, 688
SseBI	AGGCCT	1 cut(s)	539
SsiI	CCGC	4 cut(s)	32, 54, 60, 725
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	711
StuI	AGGCCT	1 cut(s)	539
StyI	CCWWGG	2 cut(s)	259, 670
TaaI	ACNGT	3 cut(s)	175, 229, 420
TasI	AATT	5 cut(s)	159, 290, 368, 375, 688
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	2 cut(s)	329, 461
Tru1I	TTAA	3 cut(s)	347, 440, 713
Tru9I	TTAA	3 cut(s)	347, 440, 713
TscAI	CASTG	3 cut(s)	12, 208, 683
TseFI	GTSAC	1 cut(s)	213
TseI	GCWGC	1 cut(s)	722
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	474, 525
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	3 cut(s)	12, 208, 683
VpaK11BI	GGWCC	2 cut(s)	57, 256
XapI	RAATTY	3 cut(s)	368, 375, 688
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.