Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Forward (+)

6543646 .. 6546306

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGTCGGCGAGGAAAGTTGGTGAAGCTGAACCTCAGCCTGAGGGGGACGGTGGCTCTGCGCAAGCTTCACAGTCAGTTCGAGCTTCCAAGTCCACTGATGATAGTGACAAGAAGAGCACAGACAGGAAACTTAAGGATGTTGATATTTGTGTGCCGATAGTATATGGGACGATCGCGTTCTATCTTGGTAGGAAGGCCAGCGAGTCTCAGTCCCATAAGTGGACGGTTTATGTTCGTGGAGCCACAAATGAGGACCTTGGGGCGGTGGTGAAGCGTGTTGTCTTTCAATTGCATCCTAGTTTCAACAACCCTATGAGAGTGATCGAGTCGCCCCCATTTGAGTTAACAGAATGCGGTTGGGGTGAATTTGAAATTGCCATCAGCCTGTTCTTCCACAATGATATCTGTGAGAAGCAGTTGGACTTGTATCACCATTTGAAGCTATATACCGAAGACGAATCGGGCCCCCAGTCGACCAAGAAACCTGTTGTTATGGAATCTTATAATGAAATAGTTTTCCCCGACCCTTCTGAGGCATTTTTTGCTCGTGTACAAAACCATCCAGCTGTCATAGTTCCCCGTTTGCCTGCTGGGATTAACTTGCCTAAGCCTGTTGTGAATGATAACATGAATGAAAACAAACGAGGAGACACGAAGGATCACCCTCTTAGTCAGTGGTTCTTGAACTTTTCAGAAGCAGATGAACTCTTAAAACTTGCAGCGGCTCGCCAAGAGGTTCAAGCCCACATTGTTAATGTAAGACGAAAACTGAGCTTGATGGAAGGGGTGCCCCAGCTGTCCAAACAACCCTCCGGTTTTGAGTACGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

277

Amino Acids

30.91

Weight (kDa)

5.8

Isoelectric Point (pI)

49.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	70 - 149	1e-30	YEATS family
pYEATS	PF20305	73 - 134	3.6e-11	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
Acc16I	TGCGCA	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	787
AccI	GTMKAC	1 cut(s)	473
AccII	CGCG	1 cut(s)	176
AciI	CCGC	3 cut(s)	263, 354, 722
AclWI	GGATC	1 cut(s)	666
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	2 cut(s)	552, 824
AfiI	CCNNNNNNNGG	3 cut(s)	219, 262, 532
AflII	CTTAAG	1 cut(s)	131
AgsI	TTSAA	6 cut(s)	287, 304, 371, 439, 685, 740
AluBI	AGCT	7 cut(s)	26, 65, 83, 442, 566, 774, 796
AluI	AGCT	7 cut(s)	26, 65, 83, 442, 566, 774, 796
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	2 cut(s)	210, 642
AlwI	GGATC	1 cut(s)	666
AoxI	GGCC	2 cut(s)	195, 463
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	3 cut(s)	253, 463, 464
AsuHPI	GGTGA	5 cut(s)	32, 280, 374, 422, 653
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	1 cut(s)	39
BaeGI	GKGCMC	2 cut(s)	467, 792
BanI	GGYRCC	1 cut(s)	787
BanII	GRGCYC	1 cut(s)	467
BauI	CACGAG	1 cut(s)	546
BbsI	GAAGAC	1 cut(s)	459
Bbv12I	GWGCWC	1 cut(s)	119
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	731
BccI	CCATC	3 cut(s)	386, 567, 772
BcoDI	GTCTC	2 cut(s)	210, 642
BfaI	CTAG	1 cut(s)	297
BfrI	CTTAAG	1 cut(s)	131
BisI	GCNGC	2 cut(s)	720, 723
BlsI	GCNGC	2 cut(s)	721, 724
Bme18I	GGWCC	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	253, 463, 464
BmiI	GGNNCC	4 cut(s)	241, 465, 466, 789
BmrI	ACTGGG	1 cut(s)	463
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	1 cut(s)	463
BpiI	GAAGAC	1 cut(s)	459
Bpu10I	CCTNAGC	2 cut(s)	33, 606
BsaJI	CCNNGG	1 cut(s)	256
BsaWI	WCCGGW	1 cut(s)	812
Bsc4I	CCNNNNNNNGG	3 cut(s)	219, 262, 532
Bse1I	ACTGG	1 cut(s)	469
Bse21I	CCTNAGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	3 cut(s)	142, 292, 559
BseLI	CCNNNNNNNGG	3 cut(s)	219, 262, 532
BseMII	CTCAG	5 cut(s)	30, 47, 221, 522, 761
BseNI	ACTGG	1 cut(s)	469
BseRI	GAGGAG	1 cut(s)	660
BseSI	GKGCMC	2 cut(s)	467, 792
BseXI	GCAGC	1 cut(s)	731
BseYI	CCCAGC	2 cut(s)	590, 792
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	197, 465
BshNI	GGYRCC	1 cut(s)	787
BsiEI	CGRYCG	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	1 cut(s)	813
BslFI	GGGAC	3 cut(s)	59, 181, 196
BslI	CCNNNNNNNGG	3 cut(s)	219, 262, 532
BsmAI	GTCTC	2 cut(s)	210, 642
BsmFI	GGGAC	3 cut(s)	59, 181, 196
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	197, 465
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	3 cut(s)	119, 467, 792
Bsp1407I	TGTACA	1 cut(s)	550
Bsp143I	GATC	3 cut(s)	171, 321, 658
BspACI	CCGC	3 cut(s)	263, 354, 722
BspANI	GGCC	2 cut(s)	197, 465
BspCNI	CTCAG	5 cut(s)	31, 46, 220, 523, 762
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	4 cut(s)	241, 465, 466, 789
BspPI	GGATC	1 cut(s)	666
BspQI	GCTCTTC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	787
BspTI	CTTAAG	1 cut(s)	131
BsrGI	TGTACA	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	469
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	171, 321, 658
BssSI	CACGAG	1 cut(s)	546
BssT1I	CCWWGG	1 cut(s)	256
Bst2BI	CACGAG	1 cut(s)	546
Bst4CI	ACNGT	3 cut(s)	50, 72, 226
Bst6I	CTCTTC	1 cut(s)	107
BstAFI	CTTAAG	1 cut(s)	131
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstAUI	TGTACA	1 cut(s)	550
BstC8I	GCNNGC	4 cut(s)	63, 199, 588, 727
BstDEI	CTNAG	7 cut(s)	33, 39, 207, 531, 606, 668, 770
BstF5I	GGATG	3 cut(s)	142, 292, 559
BstFNI	CGCG	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	3 cut(s)	174, 324, 661
BstMAI	GTCTC	2 cut(s)	210, 642
BstMBI	GATC	3 cut(s)	171, 321, 658
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstSLI	GKGCMC	2 cut(s)	467, 792
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	1 cut(s)	731
BstV2I	GAAGAC	1 cut(s)	459
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	197, 465
BtsCI	GGATG	3 cut(s)	142, 292, 559
BtsIMutI	CAGTG	2 cut(s)	93, 680
Cac8I	GCNNGC	4 cut(s)	63, 199, 588, 727
CfoI	GCGC	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	253, 463, 464
Csp6I	GTAC	2 cut(s)	551, 823
CviAII	CATG	2 cut(s)	628, 828
CviQI	GTAC	2 cut(s)	551, 823
DdeI	CTNAG	7 cut(s)	33, 39, 207, 531, 606, 668, 770
DpnI	GATC	3 cut(s)	173, 323, 660
DpnII	GATC	3 cut(s)	171, 321, 658
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	256
Eco24I	GRGCYC	1 cut(s)	467
Eco32I	GATATC	1 cut(s)	403
Eco47I	GGWCC	1 cut(s)	253
Eco81I	CCTNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	2 cut(s)	253, 464
EcoRV	GATATC	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	631, 831
FaqI	GGGAC	3 cut(s)	59, 181, 196
FatI	CATG	2 cut(s)	627, 827
FblI	GTMKAC	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	720, 723
FokI	GGATG	3 cut(s)	149, 279, 546
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	2 cut(s)	720, 723
FspBI	CTAG	1 cut(s)	297
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	2 cut(s)	720, 723
GsaI	CCCAGC	2 cut(s)	594, 796
HaeIII	GGCC	2 cut(s)	197, 465
HapII	CCGG	1 cut(s)	813
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	2 cut(s)	631, 831
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	2 cut(s)	345, 474
HindII	GTYRAC	2 cut(s)	345, 474
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	4 cut(s)	203, 326, 458, 497
HpaI	GTTAAC	1 cut(s)	345
HpaII	CCGG	1 cut(s)	813
HphI	GGTGA	5 cut(s)	32, 280, 374, 422, 653
Hpy166II	GTNNAC	5 cut(s)	93, 222, 345, 474, 551
Hpy188I	TCNGA	2 cut(s)	532, 694
Hpy188III	TCNNGA	1 cut(s)	682
Hpy8I	GTNNAC	5 cut(s)	93, 222, 345, 474, 551
HpyAV	CCTTC	4 cut(s)	187, 537, 649, 776
HpyCH4III	ACNGT	3 cut(s)	50, 72, 226
HpyCH4V	TGCA	2 cut(s)	292, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	7 cut(s)	33, 39, 207, 531, 606, 668, 770
Hsp92II	CATG	2 cut(s)	631, 831
HspAI	GCGC	1 cut(s)	59
KspAI	GTTAAC	1 cut(s)	345
Kzo9I	GATC	3 cut(s)	171, 321, 658
LguI	GCTCTTC	1 cut(s)	107
LmnI	GCTCC	1 cut(s)	239
Lsp1109I	GCAGC	1 cut(s)	731
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	3 cut(s)	173, 323, 660
MboI	GATC	3 cut(s)	171, 321, 658
MboII	GAAGA	3 cut(s)	124, 382, 464
MfeI	CAATTG	1 cut(s)	287
MhlI	GDGCHC	3 cut(s)	119, 467, 792
MluCI	AATT	3 cut(s)	287, 365, 372
MlyI	GAGTC	2 cut(s)	212, 335
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	9 cut(s)	3, 34, 42, 244, 526, 638, 675, 727, 820
MseI	TTAA	5 cut(s)	132, 344, 597, 710, 753
MspA1I	CMGCKG	3 cut(s)	566, 722, 796
MspCI	CTTAAG	1 cut(s)	131
MspI	CCGG	1 cut(s)	813
MunI	CAATTG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	356
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	542
NdeII	GATC	3 cut(s)	171, 321, 658
NlaIII	CATG	2 cut(s)	631, 831
NlaIV	GGNNCC	4 cut(s)	241, 465, 466, 789
NmuCI	GTSAC	1 cut(s)	104
NsbI	TGCGCA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	107
PctI	GAATGC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	458, 497
PkrI	GCNGC	2 cut(s)	721, 724
Ple19I	CGATCG	1 cut(s)	174
PleI	GAGTC	2 cut(s)	211, 334
PpsI	GAGTC	2 cut(s)	211, 334
PpuMI	RGGWCCY	1 cut(s)	253
PsiI	TTATAA	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	253
PspFI	CCCAGC	2 cut(s)	590, 792
PspN4I	GGNNCC	4 cut(s)	241, 465, 466, 789
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	3 cut(s)	253, 463, 464
PspPPI	RGGWCCY	1 cut(s)	253
PvuI	CGATCG	1 cut(s)	174
PvuII	CAGCTG	2 cut(s)	566, 796
RsaI	GTAC	2 cut(s)	552, 824
RsaNI	GTAC	2 cut(s)	551, 823
SalI	GTCGAC	1 cut(s)	472
SapI	GCTCTTC	1 cut(s)	107
SaqAI	TTAA	5 cut(s)	132, 344, 597, 710, 753
SatI	GCNGC	2 cut(s)	720, 723
Sau3AI	GATC	3 cut(s)	171, 321, 658
Sau96I	GGNCC	3 cut(s)	253, 463, 464
SchI	GAGTC	2 cut(s)	212, 335
SduI	GDGCHC	3 cut(s)	119, 467, 792
SfaNI	GCATC	1 cut(s)	301
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
Sse9I	AATT	3 cut(s)	287, 365, 372
SsiI	CCGC	3 cut(s)	263, 354, 722
SspMI	CTAG	1 cut(s)	297
StyI	CCWWGG	1 cut(s)	256
TaaI	ACNGT	3 cut(s)	50, 72, 226
TaqI	TCGA	3 cut(s)	79, 324, 473
TasI	AATT	3 cut(s)	287, 365, 372
TatI	WGTACW	1 cut(s)	550
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	2 cut(s)	458, 497
Tru1I	TTAA	5 cut(s)	132, 344, 597, 710, 753
Tru9I	TTAA	5 cut(s)	132, 344, 597, 710, 753
TscAI	CASTG	2 cut(s)	100, 680
TseFI	GTSAC	1 cut(s)	104
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	4 cut(s)	522, 644, 648, 717
TspRI	CASTG	2 cut(s)	100, 680
Vha464I	CTTAAG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	253
XapI	RAATTY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	473
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.