Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Forward (+)

11981508 .. 11983663

Gene Structure 2156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG134700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTCGGCGAGGAAAGTAGGTGAAGCTGAACCTCAGCCTGAGGACGGTGGCTCTGCGCAAGTTTCACAGTCCGTTCGAGGTTCCAAGTCTAGTGATGATAGTGACAAGAAGAGCACAGACAGGAAACTTAAGGATGTTGATATTTGTGTGCCGATAGTATATGGGACGATCGCGTTCTATCTCGGTAGAAAGGCCAGTGAGTCTCAGTCCCATAAGTGGACAGTTTATGTTCGTGGAGCTACGAACGAGGACCTTGGGGTGGTGGTGAAGCGTGTTGTCTTTCAATTGCATCCTAGTTTCAACAACCCTATGAGAGTGATTGAATCGCCCCCATTTGAGTTAACAGAATGTGGTTGGGGTGAATTTGAAATTGCCATCAGCCTGTTTTTCCACAATGATATCTGTGAGAAACAGTTGGACTTGTATCACCATTTGAAGCTATATACTGAAGATGAATCAGGCCCCCAGTCGACCAAGAAACCTGTTGTTATGGAATCTTACAATGAAATAGTTTTTCCAGACCCTTCCGAGGCATTTTTTGCTCGTGTGCAAAACCATCCAGCTGTCATAGTTCCCCGTTTGCCTGGCGGGTTTAACTTGCCTAATCCTGGTAAATTTCTTGTTTCAATGGTCTTGGAACCTGAGTTTACATTGATTTTGATCTTCCTATGTCGATTTGTTTGCGCAGTTATTAATGATAACATGAATGAAAACAAACGCGGAGACACGAAGGATCATCCTCTTAGTCAGTGGTTCTTGAACTTTTCAGAGGCAGATGAACTCCTAAAACTTGCAGCAGCTCGCCAAGAGGTTCAAGCCCACATTGTTAACATGAGAAGAAAACTGAGCTTGATGGAAGGGGTGCCCCAGCTGTCCAAACCACCCTCTGGATTTGAATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

301

Amino Acids

33.88

Weight (kDa)

5.68

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	69 - 148	2.2e-30	YEATS family
pYEATS	PF20305	72 - 133	4.8e-11	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	57, 685
AccB1I	GGYRCC	1 cut(s)	862
AccB7I	CCANNNNNTGG	1 cut(s)	887
AccI	GTMKAC	1 cut(s)	470
AccII	CGCG	2 cut(s)	173, 720
AciI	CCGC	2 cut(s)	588, 720
AclWI	GGATC	1 cut(s)	741
AcsI	RAATTY	2 cut(s)	362, 614
AcuI	CTGAAG	1 cut(s)	468
AfiI	CCNNNNNNNGG	6 cut(s)	44, 216, 259, 529, 608, 887
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	9 cut(s)	284, 301, 323, 368, 436, 627, 760, 815, 896
AjnI	CCWGG	2 cut(s)	583, 607
AluBI	AGCT	7 cut(s)	26, 239, 439, 563, 800, 849, 871
AluI	AGCT	7 cut(s)	26, 239, 439, 563, 800, 849, 871
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	207, 717
AlwI	GGATC	1 cut(s)	741
AoxI	GGCC	2 cut(s)	192, 460
ApeKI	GCWGC	2 cut(s)	794, 797
ApoI	RAATTY	2 cut(s)	362, 614
AseI	ATTAAT	1 cut(s)	693
AspLEI	GCGC	2 cut(s)	58, 686
AspS9I	GGNCC	2 cut(s)	250, 461
AsuHPI	GGTGA	4 cut(s)	32, 277, 371, 419
AvaII	GGWCC	1 cut(s)	250
AxyI	CCTNAGG	1 cut(s)	39
BaeGI	GKGCMC	1 cut(s)	867
BanI	GGYRCC	1 cut(s)	862
BauI	CACGAG	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	116
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	806, 809
BccI	CCATC	3 cut(s)	383, 564, 847
BcgI	CGANNNNNNTGC	2 cut(s)	663, 697
BciT130I	CCWGG	2 cut(s)	585, 609
BcoDI	GTCTC	2 cut(s)	207, 717
BfaI	CTAG	2 cut(s)	90, 294
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	795, 798
BlsI	GCNGC	2 cut(s)	796, 799
Bme1390I	CCNGG	2 cut(s)	585, 609
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	250, 461
BmiI	GGNNCC	4 cut(s)	82, 463, 639, 864
BmrFI	CCNGG	2 cut(s)	585, 609
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	33
BsaBI	GATNNNNATC	1 cut(s)	659
BsaJI	CCNNGG	2 cut(s)	253, 528
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 216, 259, 529, 608, 887
Bse1I	ACTGG	2 cut(s)	195, 466
Bse21I	CCTNAGG	1 cut(s)	39
Bse8I	GATNNNNATC	1 cut(s)	659
BseBI	CCWGG	2 cut(s)	585, 609
BseDI	CCNNGG	2 cut(s)	253, 528
BseGI	GGATG	4 cut(s)	139, 289, 556, 736
BseJI	GATNNNNATC	1 cut(s)	659
BseLI	CCNNNNNNNGG	6 cut(s)	44, 216, 259, 529, 608, 887
BseMII	CTCAG	5 cut(s)	30, 47, 218, 633, 836
BseNI	ACTGG	2 cut(s)	195, 466
BseSI	GKGCMC	1 cut(s)	867
BseXI	GCAGC	2 cut(s)	806, 809
BseYI	CCCAGC	1 cut(s)	867
Bsh1236I	CGCG	2 cut(s)	173, 720
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	194, 462
BshNI	GGYRCC	1 cut(s)	862
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	116
BslFI	GGGAC	2 cut(s)	178, 193
BslI	CCNNNNNNNGG	6 cut(s)	44, 216, 259, 529, 608, 887
BsmAI	GTCTC	2 cut(s)	207, 717
BsmFI	GGGAC	2 cut(s)	178, 193
BsnI	GGCC	2 cut(s)	194, 462
Bsp1286I	GDGCHC	2 cut(s)	116, 867
Bsp143I	GATC	3 cut(s)	168, 660, 733
BspACI	CCGC	2 cut(s)	588, 720
BspANI	GGCC	2 cut(s)	194, 462
BspCNI	CTCAG	5 cut(s)	31, 46, 217, 634, 837
BspFNI	CGCG	2 cut(s)	173, 720
BspLI	GGNNCC	4 cut(s)	82, 463, 639, 864
BspPI	GGATC	1 cut(s)	741
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	862
BspTI	CTTAAG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	195, 466
BssECI	CCNNGG	2 cut(s)	253, 528
BssMI	GATC	3 cut(s)	168, 660, 733
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	2 cut(s)	585, 609
Bst4CI	ACNGT	4 cut(s)	47, 69, 223, 414
Bst6I	CTCTTC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	802
BstDEI	CTNAG	6 cut(s)	33, 39, 204, 642, 743, 845
BstF5I	GGATG	4 cut(s)	139, 289, 556, 736
BstFNI	CGCG	2 cut(s)	173, 720
BstHHI	GCGC	2 cut(s)	58, 686
BstKTI	GATC	3 cut(s)	171, 663, 736
BstMAI	GTCTC	2 cut(s)	207, 717
BstMBI	GATC	3 cut(s)	168, 660, 733
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	2 cut(s)	585, 609
BstSCI	CCNGG	2 cut(s)	583, 607
BstSLI	GKGCMC	1 cut(s)	867
BstUI	CGCG	2 cut(s)	173, 720
BstV1I	GCAGC	2 cut(s)	806, 809
Bsu36I	CCTNAGG	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	194, 462
BtsCI	GGATG	4 cut(s)	139, 289, 556, 736
BtsIMutI	CAGTG	2 cut(s)	202, 755
Cac8I	GCNNGC	1 cut(s)	802
CfoI	GCGC	2 cut(s)	58, 686
Cfr13I	GGNCC	2 cut(s)	250, 461
CviAII	CATG	3 cut(s)	703, 832, 903
DdeI	CTNAG	6 cut(s)	33, 39, 204, 642, 743, 845
DpnI	GATC	3 cut(s)	170, 662, 735
DpnII	GATC	3 cut(s)	168, 660, 733
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	468
Eco81I	CCTNAGG	1 cut(s)	39
EcoO109I	RGGNCCY	2 cut(s)	250, 461
EcoRII	CCWGG	2 cut(s)	583, 607
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	253
EcoT22I	ATGCAT	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	706, 835, 906
FaqI	GGGAC	2 cut(s)	178, 193
FatI	CATG	3 cut(s)	702, 831, 902
FauI	CCCGC	1 cut(s)	581
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	795, 798
FokI	GGATG	4 cut(s)	146, 276, 543, 723
Fsp4HI	GCNGC	2 cut(s)	795, 798
FspBI	CTAG	2 cut(s)	90, 294
FspI	TGCGCA	2 cut(s)	57, 685
GlaI	GCGC	2 cut(s)	57, 685
GluI	GCNGC	2 cut(s)	795, 798
GsaI	CCCAGC	1 cut(s)	871
HaeIII	GGCC	2 cut(s)	194, 462
HhaI	GCGC	2 cut(s)	58, 686
Hin1II	CATG	3 cut(s)	706, 835, 906
Hin6I	GCGC	2 cut(s)	56, 684
HinP1I	GCGC	2 cut(s)	56, 684
HincII	GTYRAC	3 cut(s)	342, 471, 829
HindII	GTYRAC	3 cut(s)	342, 471, 829
HinfI	GANTC	4 cut(s)	200, 323, 455, 494
HpaI	GTTAAC	2 cut(s)	342, 829
HphI	GGTGA	4 cut(s)	32, 277, 371, 419
Hpy166II	GTNNAC	5 cut(s)	219, 342, 471, 648, 829
Hpy188I	TCNGA	2 cut(s)	529, 769
Hpy188III	TCNNGA	3 cut(s)	518, 757, 888
Hpy8I	GTNNAC	5 cut(s)	219, 342, 471, 648, 829
HpyAV	CCTTC	3 cut(s)	534, 724, 851
HpyCH4III	ACNGT	4 cut(s)	47, 69, 223, 414
HpyCH4V	TGCA	4 cut(s)	289, 550, 794, 902
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	6 cut(s)	33, 39, 204, 642, 743, 845
Hsp92II	CATG	3 cut(s)	706, 835, 906
HspAI	GCGC	2 cut(s)	56, 684
KspAI	GTTAAC	2 cut(s)	342, 829
Kzo9I	GATC	3 cut(s)	168, 660, 733
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	2 cut(s)	806, 809
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	90, 294
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	170, 662, 735
MboI	GATC	3 cut(s)	168, 660, 733
MboII	GAAGA	4 cut(s)	121, 461, 655, 849
MfeI	CAATTG	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	116, 867
MluCI	AATT	4 cut(s)	284, 362, 369, 614
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	396
Mph1103I	ATGCAT	1 cut(s)	904
MseI	TTAA	5 cut(s)	129, 341, 594, 693, 828
MspA1I	CMGCKG	2 cut(s)	563, 871
MspCI	CTTAAG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	585, 609
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	2 cut(s)	585, 609
MvnI	CGCG	2 cut(s)	173, 720
MwoI	GCNNNNNNNGC	1 cut(s)	539
NdeII	GATC	3 cut(s)	168, 660, 733
NlaIII	CATG	3 cut(s)	706, 835, 906
NlaIV	GGNNCC	4 cut(s)	82, 463, 639, 864
NmuCI	GTSAC	1 cut(s)	101
NsbI	TGCGCA	2 cut(s)	57, 685
NsiI	ATGCAT	1 cut(s)	904
PciSI	GCTCTTC	1 cut(s)	104
PfeI	GAWTC	3 cut(s)	323, 455, 494
PflMI	CCANNNNNTGG	1 cut(s)	887
PkrI	GCNGC	2 cut(s)	796, 799
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	250
PshBI	ATTAAT	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	2 cut(s)	583, 607
PspFI	CCCAGC	1 cut(s)	867
PspGI	CCWGG	2 cut(s)	583, 607
PspN4I	GGNNCC	4 cut(s)	82, 463, 639, 864
PspPI	GGNCC	2 cut(s)	250, 461
PspPPI	RGGWCCY	1 cut(s)	250
PvuI	CGATCG	1 cut(s)	171
PvuII	CAGCTG	2 cut(s)	563, 871
SalI	GTCGAC	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	5 cut(s)	129, 341, 594, 693, 828
SatI	GCNGC	2 cut(s)	795, 798
Sau3AI	GATC	3 cut(s)	168, 660, 733
Sau96I	GGNCC	2 cut(s)	250, 461
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	585, 609
SduI	GDGCHC	2 cut(s)	116, 867
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	284, 362, 369, 614
SsiI	CCGC	2 cut(s)	588, 720
SspMI	CTAG	2 cut(s)	90, 294
StyD4I	CCNGG	2 cut(s)	583, 607
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	4 cut(s)	47, 69, 223, 414
TaqI	TCGA	3 cut(s)	76, 470, 673
TasI	AATT	4 cut(s)	284, 362, 369, 614
TfiI	GAWTC	3 cut(s)	323, 455, 494
Tru1I	TTAA	5 cut(s)	129, 341, 594, 693, 828
Tru9I	TTAA	5 cut(s)	129, 341, 594, 693, 828
TscAI	CASTG	2 cut(s)	202, 755
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	794, 797
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	468, 519, 719, 723, 792
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	202, 755
Van91I	CCANNNNNTGG	1 cut(s)	887
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	1 cut(s)	250
VspI	ATTAAT	1 cut(s)	693
XapI	RAATTY	2 cut(s)	362, 614
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	2 cut(s)	90, 294
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.