Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Forward (+)

6554095 .. 6560767

Gene Structure 6673 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0081300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1704 bp

ATGGAGGATCTTCTTCGACAATTTTCTGAAGAGTCTGATGGGAGAGAAGGGAGAAAAGTCAGCAAAAACCTCAAAGGAAGGGAAAAGGTGGTCTGTGAGAAAAATGGTCATCCGGAATTTGAGGGAGGAGAAATGCACACGGGATGTAAAGTTTCAGAAAGAATACTCATAGAATATAGGAAATGGAAACTCTCTGCAAGTCTCTTCCCTCTTACTTCATTTCCTCTGTCTTCATTGGTACTGCAAAACTACATTATTCTCTGTCGGCGAAAGTCTTCAAAAACTAAGATGGAAACAGTGAAAAAAAGAGGCAGAACCGGATATAAAGAAGATGCACGTGCTAGACAGCCAGATGATTGTTCAGAATCAAATCCTGAAGTTGAGCTTACTCCTAATCCTGCTAACAATGGAAAAAAGGTTGTAAGAGGTAAATCTACATTACAGGTTATTCCAACGGGAGAATCTAATCGACAGTTTGTTGAGTGGAATGAAAGAGGACAACCTGTTGGGGAATTTTCAAAAAGGTTTAGCTCAACTATTGGGGTTTTAGTCAGAGAGAGTGTCCCGATCAACATACAAAATTGGACTGCTGTGGATGGTGTAACTAAGAACAGTGTCTGGGGTCTTTTGATGCAAAAATATGTAGTGGATCTGACTCATAAGACATTTATCTTACAACAAATGGGAAGGCTATGGAGAGCTTGGAAATCTGATCTCTCGACTAACATCAAAAGAATTGTAGATACTAGATGCACTAAGTCAGAAACTACAAGGCTACTTGGCATTCTGAAGCCCTCTGATGTGCCACAAAAAGAGTGGGATGAGTTCGTGGCAGACCGTAGTTCAGAGTCATGGCAAGAAAAGAGTGAGAAAATGAAAAAAATAAGAGCAAATCAGACTTTAACACACACAATGAGCCGAAAAGGTTATGCAAGGTTGGAAGATGAATATAAAAAGGAAAATCCTGGAAAATCATTGAGTAGGGCAGAATTATGGATTAAAGGACACGAGCAGAAGAAGTCAAAAAATGAGCATGTGGCTGCCAAAATTATTGAAATACAAGCTAAACTTGATGCGCAACCACCTAGTGAAGGGCGTATTCCGATAAAATATGATACACTAAGTCAGGTTCTTGGTAAGGAGCGTCCTGGCCGTGTTAGAGGTTTGGGATCAGGGGTTACACCTTCAAAGGTAGATGCTCAACTAGAAAGTAGCTCATGGAAACAAACATTAGAGAATAAAATTGATGCAATGAGTGAGCGCACAAAGATTCTGGAGGATATAATTTTAAAGATGAGCCAAAATGGGAATGGTGGTGGTGGTGGTGATGGTGAAAATATGCATGCTGATTCTGTTGGTACTCCACAAAATGGGCATGGACATGGTGAAGGAAGTATGAACCTTGGTACTGGAAATTCTAAGTCAGAACAAGATAGCACCCAACTTTCTATTAACGATAAGTGCAAGTTGCTAAACTGGGAGGGCACAAGTGAAGTAGTGGCTAGAGGATACATTTCTGATATTAACCCTGAATCAAAAGTGCATGGCTACAAACTTGGACCTGACTGTTATAGAATTGCTATTGAGGAAGTTGTCATGTCTGATGCTGAATTTTATCGAAGTCAGCCGGAATTTGTGACTATGGAAGATGCACTTGGAAGTACTGTTGCTTGGCCGATTAAGTACATTGTCTGTGACAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

567

Amino Acids

63.77

Weight (kDa)

8.94

Isoelectric Point (pI)

40.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	271 - 395	2.5e-18	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	482 - 564	2.6e-11	Domain of unknown function (DUF8039)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1077
AccB7I	CCANNNNNTGG	1 cut(s)	1370
AccIII	TCCGGA	1 cut(s)	112
AclWI	GGATC	3 cut(s)	15, 657, 1177
AcoI	YGGCCR	2 cut(s)	1150, 1673
AcsI	RAATTY	5 cut(s)	116, 512, 1414, 1610, 1631
AcuI	CTGAAG	3 cut(s)	48, 396, 809
AcvI	CACGTG	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	1088
AfaI	GTAC	5 cut(s)	240, 1360, 1408, 1663, 1685
AfiI	CCNNNNNNNGG	2 cut(s)	1091, 1370
AgsI	TTSAA	4 cut(s)	279, 519, 1055, 1188
AjnI	CCWGG	2 cut(s)	964, 1147
AjuI	GAANNNNNNNTTGG	2 cut(s)	1638, 1670
AluBI	AGCT	5 cut(s)	385, 531, 701, 1064, 1215
AluI	AGCT	5 cut(s)	385, 531, 701, 1064, 1215
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	3 cut(s)	15, 657, 1177
AlwNI	CAGNNNCTG	1 cut(s)	618
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	2 cut(s)	1150, 1673
ApeKI	GCWGC	1 cut(s)	1040
ApoI	RAATTY	5 cut(s)	116, 512, 1414, 1610, 1631
Asp700I	GAANNNNTTC	1 cut(s)	274
AspLEI	GCGC	2 cut(s)	1078, 1263
AspS9I	GGNCC	1 cut(s)	1559
AsuHPI	GGTGA	3 cut(s)	1337, 1343, 1397
AvaII	GGWCC	1 cut(s)	1559
BaeGI	GKGCMC	1 cut(s)	1487
BauI	CACGAG	1 cut(s)	1007
BbrPI	CACGTG	1 cut(s)	338
BbsI	GAAGAC	2 cut(s)	222, 267
BbvI	GCAGC	1 cut(s)	1027
BccI	CCATC	4 cut(s)	32, 283, 590, 1322
BceAI	ACGGC	1 cut(s)	1137
BciT130I	CCWGG	2 cut(s)	966, 1149
BciVI	GTATCC	1 cut(s)	1502
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	5 cut(s)	342, 747, 1086, 1205, 1503
BfuI	GTATCC	1 cut(s)	1502
BisI	GCNGC	1 cut(s)	1041
BlsI	GCNGC	1 cut(s)	1042
BmcAI	AGTACT	1 cut(s)	1663
Bme1390I	CCNGG	2 cut(s)	966, 1149
Bme18I	GGWCC	1 cut(s)	1559
BmgT120I	GGNCC	1 cut(s)	1559
BmrFI	CCNGG	2 cut(s)	966, 1149
BmrI	ACTGGG	1 cut(s)	1486
BmsI	GCATC	8 cut(s)	322, 621, 740, 1063, 1186, 1237, 1594, 1639
BmuI	ACTGGG	1 cut(s)	1486
BpiI	GAAGAC	2 cut(s)	222, 267
BpmI	CTGGAG	1 cut(s)	1295
BsaAI	YACGTR	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	1402
BsaWI	WCCGGW	2 cut(s)	112, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	1091, 1370
Bse1I	ACTGG	2 cut(s)	1414, 1481
Bse3DI	GCAATG	1 cut(s)	1257
BseAI	TCCGGA	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	966, 1149
BseDI	CCNNGG	1 cut(s)	1402
BseGI	GGATG	4 cut(s)	109, 149, 601, 826
BseLI	CCNNNNNNNGG	2 cut(s)	1091, 1370
BseMI	GCAATG	1 cut(s)	1257
BseNI	ACTGG	2 cut(s)	1414, 1481
BseRI	GAGGAG	1 cut(s)	141
BseSI	GKGCMC	1 cut(s)	1487
BseXI	GCAGC	1 cut(s)	1027
BshFI	GGCC	2 cut(s)	1152, 1675
BsiSI	CCGG	3 cut(s)	113, 318, 1628
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	1091, 1370
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	783
BsnI	GGCC	2 cut(s)	1152, 1675
Bsp1286I	GDGCHC	1 cut(s)	1487
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	5 cut(s)	7, 567, 649, 712, 1169
BspANI	GGCC	2 cut(s)	1152, 1675
BspEI	TCCGGA	1 cut(s)	112
BspPI	GGATC	3 cut(s)	15, 657, 1177
BsrDI	GCAATG	1 cut(s)	1257
BsrI	ACTGG	2 cut(s)	1414, 1481
BssECI	CCNNGG	1 cut(s)	1402
BssMI	GATC	5 cut(s)	7, 567, 649, 712, 1169
BssSI	CACGAG	1 cut(s)	1007
BssT1I	CCWWGG	1 cut(s)	1402
Bst2BI	CACGAG	1 cut(s)	1007
Bst2UI	CCWGG	2 cut(s)	966, 1149
Bst4CI	ACNGT	6 cut(s)	298, 474, 614, 839, 1568, 1666
Bst6I	CTCTTC	2 cut(s)	24, 209
BstBAI	YACGTR	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	1344
BstDEI	CTNAG	5 cut(s)	285, 606, 756, 1121, 1419
BstENI	CCTNNNNNAGG	1 cut(s)	1089
BstF5I	GGATG	4 cut(s)	109, 149, 601, 826
BstHHI	GCGC	2 cut(s)	1078, 1263
BstKTI	GATC	5 cut(s)	10, 570, 652, 715, 1172
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	5 cut(s)	7, 567, 649, 712, 1169
BstNI	CCWGG	2 cut(s)	966, 1149
BstNSI	RCATGY	2 cut(s)	1037, 1346
BstSCI	CCNGG	2 cut(s)	964, 1147
BstSLI	GKGCMC	1 cut(s)	1487
BstV1I	GCAGC	1 cut(s)	1027
BstV2I	GAAGAC	2 cut(s)	222, 267
BstX2I	RGATCY	2 cut(s)	7, 649
BstYI	RGATCY	2 cut(s)	7, 649
BsuI	GTATCC	1 cut(s)	1502
BsuRI	GGCC	2 cut(s)	1152, 1675
BtsCI	GGATG	4 cut(s)	109, 149, 601, 826
BtsIMutI	CAGTG	2 cut(s)	303, 619
Cac8I	GCNNGC	1 cut(s)	1344
CaiI	CAGNNNCTG	1 cut(s)	618
CfoI	GCGC	2 cut(s)	1078, 1263
Cfr13I	GGNCC	1 cut(s)	1559
CseI	GACGC	1 cut(s)	1133
Csp6I	GTAC	5 cut(s)	239, 1359, 1407, 1662, 1684
CspCI	CAANNNNNGTGG	2 cut(s)	797, 832
CviAII	CATG	8 cut(s)	852, 1034, 1218, 1343, 1376, 1382, 1544, 1597
CviQI	GTAC	5 cut(s)	239, 1359, 1407, 1662, 1684
DdeI	CTNAG	5 cut(s)	285, 606, 756, 1121, 1419
DpnI	GATC	5 cut(s)	9, 569, 651, 714, 1171
DpnII	GATC	5 cut(s)	7, 567, 649, 712, 1169
DraI	TTTAAA	1 cut(s)	1290
DraIII	CACNNNGTG	1 cut(s)	1088
EaeI	YGGCCR	2 cut(s)	1150, 1673
Eam1104I	CTCTTC	2 cut(s)	24, 209
EarI	CTCTTC	2 cut(s)	24, 209
Eco130I	CCWWGG	1 cut(s)	1402
Eco47I	GGWCC	1 cut(s)	1559
Eco57I	CTGAAG	3 cut(s)	48, 396, 809
Eco72I	CACGTG	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	1089
EcoRII	CCWGG	2 cut(s)	964, 1147
EcoT14I	CCWWGG	1 cut(s)	1402
EcoT22I	ATGCAT	1 cut(s)	1344
ErhI	CCWWGG	1 cut(s)	1402
FaeI	CATG	8 cut(s)	855, 1037, 1221, 1346, 1379, 1385, 1547, 1600
FalI	AAGNNNNNCTT	6 cut(s)	369, 401, 1053, 1085, 1638, 1670
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	8 cut(s)	851, 1033, 1217, 1342, 1375, 1381, 1543, 1596
Fnu4HI	GCNGC	1 cut(s)	1041
FokI	GGATG	4 cut(s)	96, 156, 608, 833
Fsp4HI	GCNGC	1 cut(s)	1041
FspBI	CTAG	5 cut(s)	342, 747, 1086, 1205, 1503
FspI	TGCGCA	1 cut(s)	1077
GlaI	GCGC	2 cut(s)	1077, 1262
GluI	GCNGC	1 cut(s)	1041
GsuI	CTGGAG	1 cut(s)	1295
HaeIII	GGCC	2 cut(s)	1152, 1675
HapII	CCGG	3 cut(s)	113, 318, 1628
HgaI	GACGC	1 cut(s)	1133
HhaI	GCGC	2 cut(s)	1078, 1263
Hin1II	CATG	8 cut(s)	855, 1037, 1221, 1346, 1379, 1385, 1547, 1600
Hin6I	GCGC	2 cut(s)	1076, 1261
HinP1I	GCGC	2 cut(s)	1076, 1261
HinfI	GANTC	8 cut(s)	32, 365, 461, 655, 848, 1270, 1349, 1532
HpaII	CCGG	3 cut(s)	113, 318, 1628
HphI	GGTGA	3 cut(s)	1337, 1343, 1397
Hpy188III	TCNNGA	5 cut(s)	113, 374, 565, 718, 1274
HpyAV	CCTTC	6 cut(s)	41, 72, 681, 1085, 1194, 1382
HpyCH4III	ACNGT	6 cut(s)	298, 474, 614, 839, 1568, 1666
HpyCH4IV	ACGT	1 cut(s)	337
HpyF3I	CTNAG	5 cut(s)	285, 606, 756, 1121, 1419
HpySE526I	ACGT	1 cut(s)	337
Hsp92II	CATG	8 cut(s)	855, 1037, 1221, 1346, 1379, 1385, 1547, 1600
HspAI	GCGC	2 cut(s)	1076, 1261
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	7, 567, 649, 712, 1169
LmnI	GCTCC	1 cut(s)	1141
Lsp1109I	GCAGC	1 cut(s)	1027
LweI	GCATC	8 cut(s)	322, 621, 740, 1063, 1186, 1237, 1594, 1639
MaeI	CTAG	5 cut(s)	342, 747, 1086, 1205, 1503
MaeII	ACGT	1 cut(s)	337
MaeIII	GTNAC	4 cut(s)	601, 1177, 1636, 1694
MalI	GATC	5 cut(s)	9, 569, 651, 714, 1171
MboI	GATC	5 cut(s)	7, 567, 649, 712, 1169
MboII	GAAGA	9 cut(s)	5, 41, 196, 222, 267, 341, 953, 1027, 1658
MfeI	CAATTG	1 cut(s)	1699
MflI	RGATCY	2 cut(s)	7, 649
MhlI	GDGCHC	1 cut(s)	1487
MlyI	GAGTC	3 cut(s)	41, 649, 857
MmeI	TCCRAC	2 cut(s)	476, 918
Mph1103I	ATGCAT	1 cut(s)	1344
MroI	TCCGGA	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	274
MseI	TTAA	6 cut(s)	902, 999, 1289, 1452, 1524, 1680
MslI	CAYNNNNRTG	1 cut(s)	1380
MspI	CCGG	3 cut(s)	113, 318, 1628
MspR9I	CCNGG	2 cut(s)	966, 1149
MunI	CAATTG	1 cut(s)	1699
Mva1269I	GAATGC	1 cut(s)	783
MvaI	CCWGG	2 cut(s)	966, 1149
NdeII	GATC	5 cut(s)	7, 567, 649, 712, 1169
NlaIII	CATG	8 cut(s)	855, 1037, 1221, 1346, 1379, 1385, 1547, 1600
NmuCI	GTSAC	2 cut(s)	1636, 1694
NsbI	TGCGCA	1 cut(s)	1077
NsiI	ATGCAT	1 cut(s)	1344
NspI	RCATGY	2 cut(s)	1037, 1346
PaeI	GCATGC	1 cut(s)	1346
PctI	GAATGC	1 cut(s)	783
PdmI	GAANNNNTTC	1 cut(s)	274
PfeI	GAWTC	5 cut(s)	365, 461, 1270, 1349, 1532
PflMI	CCANNNNNTGG	1 cut(s)	1370
PfoI	TCCNGGA	1 cut(s)	964
PkrI	GCNGC	1 cut(s)	1042
PleI	GAGTC	3 cut(s)	40, 649, 856
PmaCI	CACGTG	1 cut(s)	338
PmlI	CACGTG	1 cut(s)	338
PpsI	GAGTC	3 cut(s)	40, 649, 856
Ppu21I	YACGTR	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	964, 1147
PspCI	CACGTG	1 cut(s)	338
PspGI	CCWGG	2 cut(s)	964, 1147
PspPI	GGNCC	1 cut(s)	1559
PstNI	CAGNNNCTG	1 cut(s)	618
PsuI	RGATCY	2 cut(s)	7, 649
RsaI	GTAC	5 cut(s)	240, 1360, 1408, 1663, 1685
RsaNI	GTAC	5 cut(s)	239, 1359, 1407, 1662, 1684
RseI	CAYNNNNRTG	1 cut(s)	1380
SaqAI	TTAA	6 cut(s)	902, 999, 1289, 1452, 1524, 1680
SatI	GCNGC	1 cut(s)	1041
Sau3AI	GATC	5 cut(s)	7, 567, 649, 712, 1169
Sau96I	GGNCC	1 cut(s)	1559
ScaI	AGTACT	1 cut(s)	1663
SchI	GAGTC	3 cut(s)	41, 649, 857
ScrFI	CCNGG	2 cut(s)	966, 1149
SduI	GDGCHC	1 cut(s)	1487
SfaNI	GCATC	8 cut(s)	322, 621, 740, 1063, 1186, 1237, 1594, 1639
SinI	GGWCC	1 cut(s)	1559
SmiMI	CAYNNNNRTG	1 cut(s)	1380
SphI	GCATGC	1 cut(s)	1346
SspMI	CTAG	5 cut(s)	342, 747, 1086, 1205, 1503
StyD4I	CCNGG	2 cut(s)	964, 1147
StyI	CCWWGG	1 cut(s)	1402
TaaI	ACNGT	6 cut(s)	298, 474, 614, 839, 1568, 1666
TaiI	ACGT	1 cut(s)	340
TaqI	TCGA	4 cut(s)	16, 469, 719, 1618
TatI	WGTACW	2 cut(s)	1661, 1683
TfiI	GAWTC	5 cut(s)	365, 461, 1270, 1349, 1532
Tru1I	TTAA	6 cut(s)	902, 999, 1289, 1452, 1524, 1680
Tru9I	TTAA	6 cut(s)	902, 999, 1289, 1452, 1524, 1680
TscAI	CASTG	2 cut(s)	303, 619
TseFI	GTSAC	2 cut(s)	1636, 1694
TseI	GCWGC	1 cut(s)	1040
Tsp45I	GTSAC	2 cut(s)	1636, 1694
TspDTI	ATGAA	6 cut(s)	207, 222, 504, 890, 960, 1412
TspRI	CASTG	2 cut(s)	303, 619
Van91I	CCANNNNNTGG	1 cut(s)	1370
VpaK11BI	GGWCC	1 cut(s)	1559
XagI	CCTNNNNNAGG	1 cut(s)	1089
XapI	RAATTY	5 cut(s)	116, 512, 1414, 1610, 1631
XceI	RCATGY	2 cut(s)	1037, 1346
XcmI	CCANNNNNNNNNTGG	2 cut(s)	813, 1307
XmnI	GAANNNNTTC	1 cut(s)	274
XspI	CTAG	5 cut(s)	342, 747, 1086, 1205, 1503
ZrmI	AGTACT	1 cut(s)	1663
Zsp2I	ATGCAT	1 cut(s)	1344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.