Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Reverse (-)

81022721 .. 81025332

Gene Structure 2612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00142950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTCGGCGAGGAAAGTAGGTGAAGCTGAACCTCAGCCTGGGGACGGTGGCTCTGCGCAAGTTTCACAGTCCGTTCGAGCTTCCAAGTCTAGTGATGATAGTGACAAGAAGAGCACAGACAGGAAACTTAAGGATGTTGATATTTGTGTGCCGATTGTATATGGGACGATCGCGTTCTATCTCGGTAGAAAGGCCAGTGAGTCTCAGTCCCATAAGTGGACAGTTTATGTTCGTGGAGCTACGAACGAGGACCTTGGGGTGGTGGTGAAGCGTGTTGTCTTTCAATTGCATCCTAGTTTCAACAACCCTATGAGAGTGATTGAATCGCCCCCATTTGAGTTAACAGAATGTGGTTGGGGTGAATTTGAAATTGCCATCAGCCTGTTCTTCCACAATGATATCTGTGAGAAACAGTTGGACTTGTATCACCATTTGAAGCTATATACTGAAGATGAATCAGGCCCCCAGTCGACCAAGAAACCTGTTGTTATGGAATCTTACAATGAAATAGTTTTTCCGGACCCTTCCGAGGCATTTTTTGCTCGTGTGCAAAACCATCCAGCTGTCATAGTTCCCCGTTTGCCTGCCGGGTTTAACTTGCCTAATCCTGTTATTAATGATAACATGAATGAAAACAAACGCGGAGACACGAAGGATCATCCTCTTAGTCAGTGGTTCTTGAACTTTTCAGAGGCAGATGAACTCCTAAAACTTGCAGCAGCTCGCCAAGAGGTTCAAGCCCACATTGTTAACGTGAGAAGAAAACTGAGCTTGATGGAAGGGGTGCCCCAGCTGTCCAAACCACCCTCTGGATTTGAATATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

275

Amino Acids

30.83

Weight (kDa)

5.79

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YEATS	PF03366	69 - 148	1.9e-30	YEATS family
pYEATS	PF20305	72 - 133	4.1e-11	prokaryotic YEATS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	784
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccI	GTMKAC	1 cut(s)	470
AccII	CGCG	2 cut(s)	173, 642
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	1 cut(s)	642
AclWI	GGATC	1 cut(s)	663
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	468
AfiI	CCNNNNNNNGG	6 cut(s)	38, 44, 216, 259, 529, 809
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	8 cut(s)	284, 301, 323, 368, 436, 682, 737, 818
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	8 cut(s)	26, 80, 239, 439, 563, 722, 771, 793
AluI	AGCT	8 cut(s)	26, 80, 239, 439, 563, 722, 771, 793
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	2 cut(s)	207, 639
AlwI	GGATC	1 cut(s)	663
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	2 cut(s)	192, 460
ApeKI	GCWGC	2 cut(s)	716, 719
ApoI	RAATTY	1 cut(s)	362
AseI	ATTAAT	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	250, 461, 520
AsuC2I	CCSGG	1 cut(s)	589
AsuHPI	GGTGA	4 cut(s)	32, 277, 371, 419
AvaII	GGWCC	2 cut(s)	250, 520
BaeGI	GKGCMC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	784
BauI	CACGAG	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	116
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	728, 731
BccI	CCATC	3 cut(s)	383, 564, 769
BciT130I	CCWGG	1 cut(s)	39
BcnI	CCSGG	1 cut(s)	589
BcoDI	GTCTC	2 cut(s)	207, 639
BfaI	CTAG	2 cut(s)	90, 294
BfrI	CTTAAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	717, 720
BlsI	GCNGC	2 cut(s)	718, 721
Bme1390I	CCNGG	2 cut(s)	39, 589
Bme18I	GGWCC	2 cut(s)	250, 520
BmgT120I	GGNCC	3 cut(s)	250, 461, 520
BmiI	GGNNCC	3 cut(s)	463, 522, 786
BmrFI	CCNGG	2 cut(s)	39, 589
BmrI	ACTGGG	1 cut(s)	460
BmsI	GCATC	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	460
Bpu10I	CCTNAGC	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	589
BsaJI	CCNNGG	3 cut(s)	38, 253, 528
BsaWI	WCCGGW	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 44, 216, 259, 529, 809
Bse1I	ACTGG	2 cut(s)	195, 466
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	3 cut(s)	38, 253, 528
BseGI	GGATG	4 cut(s)	139, 289, 556, 658
BseLI	CCNNNNNNNGG	6 cut(s)	38, 44, 216, 259, 529, 809
BseMII	CTCAG	3 cut(s)	47, 218, 758
BseNI	ACTGG	2 cut(s)	195, 466
BseSI	GKGCMC	1 cut(s)	789
BseXI	GCAGC	2 cut(s)	728, 731
BseYI	CCCAGC	1 cut(s)	789
Bsh1236I	CGCG	2 cut(s)	173, 642
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	194, 462
BshNI	GGYRCC	1 cut(s)	784
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	116
BsiSI	CCGG	2 cut(s)	518, 588
BslFI	GGGAC	3 cut(s)	56, 178, 193
BslI	CCNNNNNNNGG	6 cut(s)	38, 44, 216, 259, 529, 809
BsmAI	GTCTC	2 cut(s)	207, 639
BsmFI	GGGAC	3 cut(s)	56, 178, 193
BsnI	GGCC	2 cut(s)	194, 462
Bsp1286I	GDGCHC	2 cut(s)	116, 789
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	168, 655
BspACI	CCGC	1 cut(s)	642
BspANI	GGCC	2 cut(s)	194, 462
BspCNI	CTCAG	3 cut(s)	46, 217, 759
BspEI	TCCGGA	1 cut(s)	517
BspFNI	CGCG	2 cut(s)	173, 642
BspLI	GGNNCC	3 cut(s)	463, 522, 786
BspPI	GGATC	1 cut(s)	663
BspQI	GCTCTTC	1 cut(s)	104
BspT107I	GGYRCC	1 cut(s)	784
BspTI	CTTAAG	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	195, 466
BssECI	CCNNGG	3 cut(s)	38, 253, 528
BssMI	GATC	2 cut(s)	168, 655
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	543
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	4 cut(s)	47, 69, 223, 414
Bst6I	CTCTTC	1 cut(s)	104
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	539
BstC8I	GCNNGC	2 cut(s)	585, 724
BstDEI	CTNAG	4 cut(s)	33, 204, 665, 767
BstF5I	GGATG	4 cut(s)	139, 289, 556, 658
BstFNI	CGCG	2 cut(s)	173, 642
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	2 cut(s)	171, 658
BstMAI	GTCTC	2 cut(s)	207, 639
BstMBI	GATC	2 cut(s)	168, 655
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	2 cut(s)	37, 587
BstSLI	GKGCMC	1 cut(s)	789
BstUI	CGCG	2 cut(s)	173, 642
BstV1I	GCAGC	2 cut(s)	728, 731
BsuRI	GGCC	2 cut(s)	194, 462
BtsCI	GGATG	4 cut(s)	139, 289, 556, 658
BtsIMutI	CAGTG	2 cut(s)	202, 677
Cac8I	GCNNGC	2 cut(s)	585, 724
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	250, 461, 520
CviAII	CATG	1 cut(s)	625
DdeI	CTNAG	4 cut(s)	33, 204, 665, 767
DpnI	GATC	2 cut(s)	170, 657
DpnII	GATC	2 cut(s)	168, 655
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco130I	CCWWGG	1 cut(s)	253
Eco32I	GATATC	1 cut(s)	400
Eco47I	GGWCC	2 cut(s)	250, 520
Eco57I	CTGAAG	1 cut(s)	468
EcoO109I	RGGNCCY	2 cut(s)	250, 461
EcoRII	CCWGG	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	253
ErhI	CCWWGG	1 cut(s)	253
FaeI	CATG	1 cut(s)	628
FaqI	GGGAC	3 cut(s)	56, 178, 193
FatI	CATG	1 cut(s)	624
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	2 cut(s)	717, 720
FokI	GGATG	4 cut(s)	146, 276, 543, 645
Fsp4HI	GCNGC	2 cut(s)	717, 720
FspBI	CTAG	2 cut(s)	90, 294
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	717, 720
GsaI	CCCAGC	1 cut(s)	793
HaeIII	GGCC	2 cut(s)	194, 462
HapII	CCGG	2 cut(s)	518, 588
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	1 cut(s)	628
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HincII	GTYRAC	3 cut(s)	342, 471, 751
HindII	GTYRAC	3 cut(s)	342, 471, 751
HinfI	GANTC	4 cut(s)	200, 323, 455, 494
HpaI	GTTAAC	2 cut(s)	342, 751
HpaII	CCGG	2 cut(s)	518, 588
HphI	GGTGA	4 cut(s)	32, 277, 371, 419
Hpy166II	GTNNAC	4 cut(s)	219, 342, 471, 751
Hpy188I	TCNGA	2 cut(s)	529, 691
Hpy188III	TCNNGA	3 cut(s)	518, 679, 810
Hpy8I	GTNNAC	4 cut(s)	219, 342, 471, 751
HpyAV	CCTTC	3 cut(s)	534, 646, 773
HpyCH4III	ACNGT	4 cut(s)	47, 69, 223, 414
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	3 cut(s)	289, 550, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	4 cut(s)	33, 204, 665, 767
HpySE526I	ACGT	1 cut(s)	753
Hsp92II	CATG	1 cut(s)	628
HspAI	GCGC	1 cut(s)	56
Kpn2I	TCCGGA	1 cut(s)	517
KspAI	GTTAAC	2 cut(s)	342, 751
Kzo9I	GATC	2 cut(s)	168, 655
LguI	GCTCTTC	1 cut(s)	104
LmnI	GCTCC	1 cut(s)	236
Lsp1109I	GCAGC	2 cut(s)	728, 731
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	90, 294
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	2 cut(s)	170, 657
MboI	GATC	2 cut(s)	168, 655
MboII	GAAGA	4 cut(s)	121, 379, 461, 771
MfeI	CAATTG	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	116, 789
MluCI	AATT	3 cut(s)	284, 362, 369
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	8 cut(s)	3, 42, 241, 523, 672, 685, 724, 817
MroI	TCCGGA	1 cut(s)	517
MseI	TTAA	5 cut(s)	129, 341, 594, 615, 750
MspA1I	CMGCKG	2 cut(s)	563, 793
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	2 cut(s)	518, 588
MspR9I	CCNGG	2 cut(s)	39, 589
MunI	CAATTG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	39
MvnI	CGCG	2 cut(s)	173, 642
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	589
NdeII	GATC	2 cut(s)	168, 655
NlaIII	CATG	1 cut(s)	628
NlaIV	GGNNCC	3 cut(s)	463, 522, 786
NmuCI	GTSAC	1 cut(s)	101
NsbI	TGCGCA	1 cut(s)	57
PciSI	GCTCTTC	1 cut(s)	104
PfeI	GAWTC	3 cut(s)	323, 455, 494
PflMI	CCANNNNNTGG	1 cut(s)	809
PkrI	GCNGC	2 cut(s)	718, 721
Ple19I	CGATCG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PpuMI	RGGWCCY	1 cut(s)	250
PshBI	ATTAAT	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	789
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	3 cut(s)	463, 522, 786
PspPI	GGNCC	3 cut(s)	250, 461, 520
PspPPI	RGGWCCY	1 cut(s)	250
PvuI	CGATCG	1 cut(s)	171
PvuII	CAGCTG	2 cut(s)	563, 793
SalI	GTCGAC	1 cut(s)	469
SapI	GCTCTTC	1 cut(s)	104
SaqAI	TTAA	5 cut(s)	129, 341, 594, 615, 750
SatI	GCNGC	2 cut(s)	717, 720
Sau3AI	GATC	2 cut(s)	168, 655
Sau96I	GGNCC	3 cut(s)	250, 461, 520
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	39, 589
SduI	GDGCHC	2 cut(s)	116, 789
SfaNI	GCATC	1 cut(s)	298
SinI	GGWCC	2 cut(s)	250, 520
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	284, 362, 369
SsiI	CCGC	1 cut(s)	642
SspMI	CTAG	2 cut(s)	90, 294
StyD4I	CCNGG	2 cut(s)	37, 587
StyI	CCWWGG	1 cut(s)	253
TaaI	ACNGT	4 cut(s)	47, 69, 223, 414
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	2 cut(s)	76, 470
TasI	AATT	3 cut(s)	284, 362, 369
TfiI	GAWTC	3 cut(s)	323, 455, 494
Tru1I	TTAA	5 cut(s)	129, 341, 594, 615, 750
Tru9I	TTAA	5 cut(s)	129, 341, 594, 615, 750
TscAI	CASTG	2 cut(s)	202, 677
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	716, 719
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	5 cut(s)	468, 519, 641, 645, 714
TspGWI	ACGGA	1 cut(s)	61
TspRI	CASTG	2 cut(s)	202, 677
Van91I	CCANNNNNTGG	1 cut(s)	809
Vha464I	CTTAAG	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	250, 520
VspI	ATTAAT	1 cut(s)	615
XapI	RAATTY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	2 cut(s)	90, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.