Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010701

Physical Location & Seq

Genomic Coordinates Forward (+)

15742404 .. 15744614

Gene Structure 2211 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g21710.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTCAGTGAGAAAAGCAGGTGAATCTGAACCGCCTCAGCCGGAGGAGGGTGGCAGCTCTGCCCAACTGTCGCAGCCAGTCCGAACTTCAAGGCCTGCGGAAGATGGCGACAAGAAGAGCACAAACAAGAGACTTAAGGATGTTGATATCTGTGTGCCGATAGTATACGGGACAGTTGCATTCTACCTCGGTAGGAAGGCCAGTGAGTCTCAGTCCCATAAGTGGACTGTTTATGTTCGTGGGGCAACAAATGAGGACCTTGGTGTGGTGGTAAAGCGAGTTATATTTCAATTGCATCCTAGTTTCAATAACCCTATGAGAGTGATTGATTCTCCCCCATTTGAGTTAACGGAATGTGGTTGGGGTGAATTTGAAATTGCCATCAGTCTGTTCTTCCACAATGATGTCTGTGAGAGACAGTTAGACTTGTATCACCATTTGAAGTTATATACTGAAGATGAATCTGGGCCCCAGTCAACCAAGAAACCTGTTGTTGTGGAGTCTTACAATGAAATAGTTTTATCCGATCCTTTAGAGGCTTGTTTTGCTCGTCTGCAGAACCATCCAGCTGTAATAGTACCCCGTTTACCTGCTGGTTTTAACTTGCCTAATCCTGTATCAATTGATCAGAAGAATGACAAGGAACGGGGGGACACAAAAGATCATCCCCTTAGTCAGTGGTTCTTGAATTTTTCTGAGGCAGATGAGCTCTTAAAACTTGCAGCGGCTCGTCAAGAGGTCCAAGCCCACATTGTCAATGTGAGAAGAAAACTGAGTATGTTGGATGGGCCGCCCCAACTGTCAAAACCACCGTCAGGATACGAATATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000123 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006325 GO:0006464 GO:0006473 GO:0006475 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009909 GO:0009987 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031248 GO:0031974 GO:0031981 GO:0032991 GO:0035267 GO:0036211 GO:0040034 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043967 GO:0043981 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048506 GO:0048509 GO:0048510 GO:0048580 GO:0048583 GO:0048831 GO:0050789 GO:0050793 GO:0051239 GO:0051276 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1990234 GO:2000026 GO:2000028 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YEATS

Protein Analysis

278

Amino Acids

31.08

Weight (kDa)

5.8

Isoelectric Point (pI)

53.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18000 AT2G18000
fragaria_vesca	FvH4_1g11970
malus_domestica	MD02G1133500.v1.1 MD02G1133700.v1.1 MD15G1246700.v1.1
prunus_persica	Prupe.7G167100_v2.0.a1 Prupe.7G167100_v2.0.a1
pyrus_communis	pycom02g10540 pycom15g21710
rosa_chinensis	RchiOBHm_Chr2g0099591
rosa_laevigata	RLG00000016894
rosa_multiflora	Rmu_sc0005120.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142950
rosa_rugosa	Rorug02G0081200 Rorug02G0081300
rosa_samantha	Rh2AG130800 Rh2BG133900 Rh2CG134700 Rh2DG135100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	8
Acc36I	ACCTGC	2 cut(s)	8, 598
AccI	GTMKAC	1 cut(s)	165
AciI	CCGC	4 cut(s)	32, 98, 725, 791
AclWI	GGATC	1 cut(s)	521
AcsI	RAATTY	2 cut(s)	368, 688
AcuI	CTGAAG	1 cut(s)	474
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	4 cut(s)	47, 222, 265, 815
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	6 cut(s)	90, 290, 307, 374, 442, 688
AluBI	AGCT	3 cut(s)	57, 569, 709
AluI	AGCT	3 cut(s)	57, 569, 709
Alw21I	GWGCWC	2 cut(s)	122, 711
Alw26I	GTCTC	3 cut(s)	124, 213, 409
AlwI	GGATC	1 cut(s)	521
AoxI	GGCC	4 cut(s)	92, 198, 467, 788
ApaI	GGGCCC	1 cut(s)	471
ApeKI	GCWGC	3 cut(s)	54, 73, 722
ApoI	RAATTY	2 cut(s)	368, 688
ArsI	GACNNNNNNTTYG	2 cut(s)	797, 829
AspS9I	GGNCC	5 cut(s)	256, 467, 468, 739, 788
AsuHPI	GGTGA	3 cut(s)	32, 377, 425
AvaII	GGWCC	2 cut(s)	256, 739
BaeGI	GKGCMC	1 cut(s)	471
BanII	GRGCYC	2 cut(s)	471, 711
Bbv12I	GWGCWC	2 cut(s)	122, 711
BbvCI	CCTCAGC	1 cut(s)	36
BbvI	GCAGC	3 cut(s)	66, 85, 734
BccI	CCATC	4 cut(s)	98, 389, 570, 779
BciVI	GTATCC	1 cut(s)	812
BclI	TGATCA	1 cut(s)	625
BcoDI	GTCTC	3 cut(s)	124, 213, 409
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	554
BfrI	CTTAAG	1 cut(s)	134
BfuAI	ACCTGC	2 cut(s)	8, 598
BfuI	GTATCC	1 cut(s)	812
BisI	GCNGC	5 cut(s)	55, 74, 723, 726, 791
BlsI	GCNGC	5 cut(s)	56, 75, 724, 727, 792
Bme18I	GGWCC	2 cut(s)	256, 739
BmgT120I	GGNCC	5 cut(s)	256, 467, 468, 739, 788
BmiI	GGNNCC	2 cut(s)	469, 470
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	1 cut(s)	466
Bpu10I	CCTNAGC	1 cut(s)	36
BsaJI	CCNNGG	2 cut(s)	187, 259
Bsc4I	CCNNNNNNNGG	4 cut(s)	47, 222, 265, 815
Bse1I	ACTGG	3 cut(s)	77, 201, 472
BseDI	CCNNGG	2 cut(s)	187, 259
BseGI	GGATG	5 cut(s)	145, 295, 562, 664, 790
BseLI	CCNNNNNNNGG	4 cut(s)	47, 222, 265, 815
BseMII	CTCAG	4 cut(s)	50, 224, 687, 764
BseNI	ACTGG	3 cut(s)	77, 201, 472
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	471
BseXI	GCAGC	3 cut(s)	66, 85, 734
BshFI	GGCC	4 cut(s)	94, 200, 469, 790
BsiHKAI	GWGCWC	2 cut(s)	122, 711
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	3 cut(s)	184, 199, 665
BslI	CCNNNNNNNGG	4 cut(s)	47, 222, 265, 815
BsmAI	GTCTC	3 cut(s)	124, 213, 409
BsmFI	GGGAC	3 cut(s)	184, 199, 665
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	4 cut(s)	94, 200, 469, 790
Bsp120I	GGGCCC	1 cut(s)	467
Bsp1286I	GDGCHC	3 cut(s)	122, 471, 711
Bsp143I	GATC	3 cut(s)	526, 625, 661
BspACI	CCGC	4 cut(s)	32, 98, 725, 791
BspANI	GGCC	4 cut(s)	94, 200, 469, 790
BspCNI	CTCAG	4 cut(s)	49, 223, 688, 765
BspLI	GGNNCC	2 cut(s)	469, 470
BspMAI	CTGCAG	1 cut(s)	558
BspMI	ACCTGC	2 cut(s)	8, 598
BspPI	GGATC	1 cut(s)	521
BspQI	GCTCTTC	1 cut(s)	110
BspTI	CTTAAG	1 cut(s)	134
BsrI	ACTGG	3 cut(s)	77, 201, 472
BssECI	CCNNGG	2 cut(s)	187, 259
BssMI	GATC	3 cut(s)	526, 625, 661
BssNAI	GTATAC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	259
Bst1107I	GTATAC	1 cut(s)	166
Bst4CI	ACNGT	6 cut(s)	69, 175, 229, 420, 801, 813
Bst6I	CTCTTC	1 cut(s)	110
BstAFI	CTTAAG	1 cut(s)	134
BstC8I	GCNNGC	1 cut(s)	96
BstDEI	CTNAG	5 cut(s)	36, 210, 671, 696, 773
BstF5I	GGATG	5 cut(s)	145, 295, 562, 664, 790
BstKTI	GATC	3 cut(s)	529, 628, 664
BstMAI	GTCTC	3 cut(s)	124, 213, 409
BstMBI	GATC	3 cut(s)	526, 625, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	554
BstSLI	GKGCMC	1 cut(s)	471
BstV1I	GCAGC	3 cut(s)	66, 85, 734
BstZ17I	GTATAC	1 cut(s)	166
BsuI	GTATCC	1 cut(s)	812
BsuRI	GGCC	4 cut(s)	94, 200, 469, 790
BtsCI	GGATG	5 cut(s)	145, 295, 562, 664, 790
BtsIMutI	CAGTG	3 cut(s)	12, 208, 683
BveI	ACCTGC	2 cut(s)	8, 598
Cac8I	GCNNGC	1 cut(s)	96
Cfr13I	GGNCC	5 cut(s)	256, 467, 468, 739, 788
Csp6I	GTAC	1 cut(s)	578
CviAII	CATG	1 cut(s)	831
CviQI	GTAC	1 cut(s)	578
DdeI	CTNAG	5 cut(s)	36, 210, 671, 696, 773
DpnI	GATC	3 cut(s)	528, 627, 663
DpnII	GATC	3 cut(s)	526, 625, 661
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
Ecl136II	GAGCTC	1 cut(s)	709
Eco130I	CCWWGG	1 cut(s)	259
Eco147I	AGGCCT	1 cut(s)	94
Eco24I	GRGCYC	2 cut(s)	471, 711
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	256, 739
Eco53kI	GAGCTC	1 cut(s)	709
Eco57I	CTGAAG	1 cut(s)	474
EcoICRI	GAGCTC	1 cut(s)	709
EcoO109I	RGGNCCY	2 cut(s)	256, 468
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	259
EcoT22I	ATGCAT	1 cut(s)	832
EcoT38I	GRGCYC	2 cut(s)	471, 711
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	834
FaqI	GGGAC	3 cut(s)	184, 199, 665
FatI	CATG	1 cut(s)	830
FbaI	TGATCA	1 cut(s)	625
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	5 cut(s)	55, 74, 723, 726, 791
FokI	GGATG	5 cut(s)	152, 282, 549, 651, 797
FriOI	GRGCYC	2 cut(s)	471, 711
Fsp4HI	GCNGC	5 cut(s)	55, 74, 723, 726, 791
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	5 cut(s)	55, 74, 723, 726, 791
HaeIII	GGCC	4 cut(s)	94, 200, 469, 790
HapII	CCGG	1 cut(s)	41
Hin1II	CATG	1 cut(s)	834
HincII	GTYRAC	2 cut(s)	348, 477
HindII	GTYRAC	2 cut(s)	348, 477
HinfI	GANTC	5 cut(s)	23, 206, 329, 461, 500
HpaI	GTTAAC	1 cut(s)	348
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	3 cut(s)	32, 377, 425
Hpy166II	GTNNAC	5 cut(s)	166, 225, 348, 477, 587
Hpy188I	TCNGA	5 cut(s)	28, 83, 526, 630, 697
Hpy188III	TCNNGA	3 cut(s)	685, 734, 816
Hpy8I	GTNNAC	5 cut(s)	166, 225, 348, 477, 587
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	6 cut(s)	69, 175, 229, 420, 801, 813
HpyCH4V	TGCA	5 cut(s)	179, 295, 556, 722, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	5 cut(s)	36, 210, 671, 696, 773
Hsp92II	CATG	1 cut(s)	834
Ksp22I	TGATCA	1 cut(s)	625
KspAI	GTTAAC	1 cut(s)	348
Kzo9I	GATC	3 cut(s)	526, 625, 661
LguI	GCTCTTC	1 cut(s)	110
Lsp1109I	GCAGC	3 cut(s)	66, 85, 734
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	300
MalI	GATC	3 cut(s)	528, 627, 663
MboI	GATC	3 cut(s)	526, 625, 661
MboII	GAAGA	6 cut(s)	113, 127, 385, 467, 643, 777
MfeI	CAATTG	2 cut(s)	290, 621
MhlI	GDGCHC	3 cut(s)	122, 471, 711
MluCI	AATT	5 cut(s)	290, 368, 375, 621, 688
MlyI	GAGTC	2 cut(s)	215, 509
MmeI	TCCRAC	1 cut(s)	762
MnlI	CCTC	8 cut(s)	37, 40, 45, 197, 247, 529, 691, 730
Mph1103I	ATGCAT	1 cut(s)	832
MseI	TTAA	4 cut(s)	135, 347, 600, 713
MslI	CAYNNNNRTG	1 cut(s)	402
MspA1I	CMGCKG	2 cut(s)	569, 725
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	1 cut(s)	41
MunI	CAATTG	2 cut(s)	290, 621
Mva1269I	GAATGC	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	3 cut(s)	526, 625, 661
NlaIII	CATG	1 cut(s)	834
NlaIV	GGNNCC	2 cut(s)	469, 470
NsiI	ATGCAT	1 cut(s)	832
PaqCI	CACCTGC	1 cut(s)	8
PceI	AGGCCT	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	110
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	23, 329, 461
PkrI	GCNGC	5 cut(s)	56, 75, 724, 727, 792
PleI	GAGTC	2 cut(s)	214, 508
PpsI	GAGTC	2 cut(s)	214, 508
PpuMI	RGGWCCY	1 cut(s)	256
Psp124BI	GAGCTC	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	469, 470
PspOMI	GGGCCC	1 cut(s)	467
PspPI	GGNCC	5 cut(s)	256, 467, 468, 739, 788
PspPPI	RGGWCCY	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	558
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	711
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	4 cut(s)	135, 347, 600, 713
SatI	GCNGC	5 cut(s)	55, 74, 723, 726, 791
Sau3AI	GATC	3 cut(s)	526, 625, 661
Sau96I	GGNCC	5 cut(s)	256, 467, 468, 739, 788
SchI	GAGTC	2 cut(s)	215, 509
SduI	GDGCHC	3 cut(s)	122, 471, 711
SetI	ASST	9 cut(s)	22, 59, 189, 261, 490, 571, 592, 711, 741
SfaNI	GCATC	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	554
SinI	GGWCC	2 cut(s)	256, 739
SmiMI	CAYNNNNRTG	1 cut(s)	402
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	5 cut(s)	290, 368, 375, 621, 688
SseBI	AGGCCT	1 cut(s)	94
SsiI	CCGC	4 cut(s)	32, 98, 725, 791
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	711
StuI	AGGCCT	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	6 cut(s)	69, 175, 229, 420, 801, 813
TasI	AATT	5 cut(s)	290, 368, 375, 621, 688
TauI	GCSGC	2 cut(s)	728, 793
TfiI	GAWTC	3 cut(s)	23, 329, 461
Tru1I	TTAA	4 cut(s)	135, 347, 600, 713
Tru9I	TTAA	4 cut(s)	135, 347, 600, 713
TscAI	CASTG	3 cut(s)	12, 208, 683
TseI	GCWGC	3 cut(s)	54, 73, 722
TspDTI	ATGAA	2 cut(s)	474, 525
TspGWI	ACGGA	1 cut(s)	365
TspRI	CASTG	3 cut(s)	12, 208, 683
Vha464I	CTTAAG	1 cut(s)	134
VpaK11BI	GGWCC	2 cut(s)	256, 739
XapI	RAATTY	2 cut(s)	368, 688
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	1 cut(s)	300
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.