AT2G18050

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013454
Physical Location & Seq
Forward (+)
7845923 .. 7847031
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G18050.2

Sequence Viewer

Length: 504 bp
ATGGCAGAAGACAAGATCTTAAAGAAGACTCCGGCGGCGAAGAAGCCGCGAAAACCGAAAACCACCACTCATCCTCCATACTTTCAGATGATAAAAGAGGCTTTGATGGTCCTGAAAGAGAAGAACGGATCAAGCCCTTATGCTATAGCTAAGAAGATAGAGGAGAAACACAAGTCTTTACTTCCAGAGAGTTTCCGTAAAACACTTTCTCTACAGCTTAAAAACTCTGTTGCTAAAGGTAAGCTCGTGAAGATCAGAGCCTCTTACAAGCTCTCAGATACCACCAAGATGATAACGAGGCAGCAGGACAAGAAGAATAAGAAGAATATGAAGCAAGAAGATAAAGAGATCACAAAGAGGACTAGGTCTTCTTCGACAAGGCCTAAGAAGACTGTGTCTGTGAACAAACAAGAAAAGAAGAGGAAAGTGAAGAAGGCGAGACAGCCTAAGTCTATCAAATCTTCAGTTGGTAAGAAGAAGGCCATGAAAGCTTCCGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

167

Amino Acids

19.05

Weight (kDa)

10.64

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 1 - 61 3.9e-12 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 49
AciI CCGC 3 cut(s) 35, 47, 495
AclWI GGATC 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 447
AluBI AGCT 5 cut(s) 149, 217, 244, 271, 491
AluI AGCT 5 cut(s) 149, 217, 244, 271, 491
Alw26I GTCTC 1 cut(s) 433
AlwI GGATC 1 cut(s) 136
AoxI GGCC 2 cut(s) 380, 480
ApeKI GCWGC 2 cut(s) 301, 497
AspS9I GGNCC 1 cut(s) 109
AvaII GGWCC 1 cut(s) 109
BauI CACGAG 1 cut(s) 245
BbsI GAAGAC 4 cut(s) 15, 32, 360, 395
BbvI GCAGC 2 cut(s) 313, 484
BccI CCATC 1 cut(s) 100
BcoDI GTCTC 1 cut(s) 433
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 2 cut(s) 144, 212
BglII AGATCT 1 cut(s) 15
BisI GCNGC 4 cut(s) 36, 47, 302, 498
BlsI GCNGC 4 cut(s) 37, 48, 303, 499
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BpiI GAAGAC 4 cut(s) 15, 32, 360, 395
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 288
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 313, 484
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 2 cut(s) 382, 482
BsiSI CCGG 1 cut(s) 32
BsmAI GTCTC 1 cut(s) 433
BsnI GGCC 2 cut(s) 382, 482
Bsp143I GATC 4 cut(s) 15, 128, 252, 348
BspACI CCGC 3 cut(s) 35, 47, 495
BspANI GGCC 2 cut(s) 382, 482
BspCNI CTCAG 1 cut(s) 287
BspFNI CGCG 1 cut(s) 49
BspPI GGATC 1 cut(s) 136
BssMI GATC 4 cut(s) 15, 128, 252, 348
BssSI CACGAG 1 cut(s) 245
Bst2BI CACGAG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 394
Bst6I CTCTTC 1 cut(s) 413
BstDEI CTNAG 4 cut(s) 150, 274, 384, 447
BstF5I GGATG 1 cut(s) 70
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 4 cut(s) 18, 131, 255, 351
BstMAI GTCTC 1 cut(s) 433
BstMBI GATC 4 cut(s) 15, 128, 252, 348
BstMWI GCNNNNNNNGC 2 cut(s) 488, 497
BstSFI CTRYAG 2 cut(s) 144, 212
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 2 cut(s) 313, 484
BstV2I GAAGAC 4 cut(s) 15, 32, 360, 395
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BsuRI GGCC 2 cut(s) 382, 482
BtsCI GGATG 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 109
CviAII CATG 1 cut(s) 484
DdeI CTNAG 4 cut(s) 150, 274, 384, 447
DpnI GATC 4 cut(s) 17, 130, 254, 350
DpnII GATC 4 cut(s) 15, 128, 252, 348
Eam1104I CTCTTC 1 cut(s) 413
EarI CTCTTC 1 cut(s) 413
Eco147I AGGCCT 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 109
Eco57I CTGAAG 1 cut(s) 447
FaeI CATG 1 cut(s) 487
FaiI YATR 5 cut(s) 79, 141, 146, 329, 485
FatI CATG 1 cut(s) 483
Fnu4HI GCNGC 4 cut(s) 36, 47, 302, 498
FokI GGATG 1 cut(s) 57
Fsp4HI GCNGC 4 cut(s) 36, 47, 302, 498
FspBI CTAG 1 cut(s) 363
GluI GCNGC 4 cut(s) 36, 47, 302, 498
HaeIII GGCC 2 cut(s) 382, 482
HapII CCGG 1 cut(s) 32
Hin1II CATG 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 489
HinfI GANTC 1 cut(s) 28
HpaII CCGG 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 3 cut(s) 87, 257, 277
Hpy188III TCNNGA 3 cut(s) 112, 185, 247
Hpy8I GTNNAC 1 cut(s) 403
HpyAV CCTTC 2 cut(s) 427, 472
HpyCH4III ACNGT 1 cut(s) 394
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 497
HpyF3I CTNAG 4 cut(s) 150, 274, 384, 447
Hsp92II CATG 1 cut(s) 487
Kzo9I GATC 4 cut(s) 15, 128, 252, 348
LpnPI CCDG 4 cut(s) 45, 125, 198, 290
Lsp1109I GCAGC 2 cut(s) 313, 484
MaeI CTAG 1 cut(s) 363
MalI GATC 4 cut(s) 17, 130, 254, 350
MboI GATC 4 cut(s) 15, 128, 252, 348
MflI RGATCY 1 cut(s) 15
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 7 cut(s) 84, 91, 154, 271, 291, 351, 414
MseI TTAA 2 cut(s) 20, 219
MslI CAYNNNNRTG 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 497
MspI CCGG 1 cut(s) 32
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 488, 497
NdeII GATC 4 cut(s) 15, 128, 252, 348
NlaIII CATG 1 cut(s) 487
PceI AGGCCT 1 cut(s) 382
PflFI GACNNNGTC 2 cut(s) 364, 394
PkrI GCNGC 4 cut(s) 37, 48, 303, 499
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 109
PsuI RGATCY 1 cut(s) 15
PsyI GACNNNGTC 2 cut(s) 364, 394
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 2 cut(s) 20, 219
SatI GCNGC 4 cut(s) 36, 47, 302, 498
Sau3AI GATC 4 cut(s) 15, 128, 252, 348
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 1 cut(s) 22
SetI ASST 7 cut(s) 151, 219, 241, 246, 273, 368, 493
SfcI CTRYAG 2 cut(s) 144, 212
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 287
SseBI AGGCCT 1 cut(s) 382
SsiI CCGC 3 cut(s) 35, 47, 495
SspMI CTAG 1 cut(s) 363
StuI AGGCCT 1 cut(s) 382
TaaI ACNGT 1 cut(s) 394
TaqI TCGA 1 cut(s) 374
TauI GCSGC 2 cut(s) 38, 49
Tru1I TTAA 2 cut(s) 20, 219
Tru9I TTAA 2 cut(s) 20, 219
TseI GCWGC 2 cut(s) 301, 497
TspDTI ATGAA 2 cut(s) 344, 500
TspGWI ACGGA 2 cut(s) 141, 185
Tth111I GACNNNGTC 2 cut(s) 364, 394
VpaK11BI GGWCC 1 cut(s) 109
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.