Rh2DG136100

Histone H1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013454
Physical Location & Seq
Forward (+)
11426112 .. 11426788
677 bp
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UTR
Exon/CDS
Intron
Rh2DG136100.1

Sequence Viewer

Length: 591 bp
ATGTCTGCCACTGAAGAAGTCGAAGCTCCGACCGTGGAGGCCCCGCCGGCGACGGAGGAGAAGCCAGTGAGGGAGAAAAAGCTGAGGGATCTGAAGGAGAAGAAGCCCAAACAGCCCAAAACCAAAACCAAACCCAAAACCGCTGCTCATCCTCCCTATTTTCAGATGATCAAAGAGGCACTGTTGGCTCTGAACGAGAAGAGCGGGTCGAGTCCTTACGCCATAGCCAAGTACATGGAGGAGAAGCACAAGGCAGTGCTTCCGGCCAATTTCAAGAAGACTCTGGCTCTGCAATTGAAGAACTCGGAGGCGAGAGGGAAACTGGTCAAGGTCAAGGCCTCTTACAAGTTGTCTGAGGCGGGGAAGAAGGACAAGAGCGCAAGTAAAAGAACAACTCGAGCTTCGAAGCCCAAGGAGGAGGAGGAGAAGATCAAGACTAAGACTAAGACTAAGACTAAGGTGTCTGCTGCTCCAAAGGTGACGAAGAAGAAGCCGGCTAAGAAGAATAAGAAATCGAGCGCTGCAAAGCCGAAGCAGCCCAAGTCGATCAAGAGCCCTGCTGCTAAGAAACCCAAGAAGGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

196

Amino Acids

21.6

Weight (kDa)

10.24

Isoelectric Point (pI)

45.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 50 - 116 1.2e-16 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
AccBSI CCGCTC 1 cut(s) 204
AciI CCGC 4 cut(s) 44, 141, 204, 359
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 264
AcuI CTGAAG 2 cut(s) 33, 113
AfaI GTAC 1 cut(s) 233
AfeI AGCGCT 1 cut(s) 520
AgsI TTSAA 2 cut(s) 274, 298
AluBI AGCT 3 cut(s) 26, 82, 401
AluI AGCT 3 cut(s) 26, 82, 401
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 396
Aor51HI AGCGCT 1 cut(s) 520
AoxI GGCC 3 cut(s) 39, 264, 336
ApeKI GCWGC 7 cut(s) 143, 467, 521, 535, 560, 581, 584
AspLEI GCGC 2 cut(s) 380, 521
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 490
AsuII TTCGAA 1 cut(s) 404
AvaI CYCGRG 1 cut(s) 396
BanII GRGCYC 1 cut(s) 557
BbsI GAAGAC 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 7 cut(s) 130, 454, 508, 547, 547, 568, 571
BclI TGATCA 1 cut(s) 168
BfoI RGCGCY 1 cut(s) 522
BglI GCCNNNNNGGC 1 cut(s) 47
BisI GCNGC 7 cut(s) 144, 468, 522, 536, 561, 582, 585
BlsI GCNGC 7 cut(s) 145, 469, 523, 537, 562, 583, 586
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 284
Bpu10I CCTNAGC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 33, 411
Bse118I RCCGGY 2 cut(s) 46, 493
Bse1I ACTGG 2 cut(s) 65, 327
BseDI CCNNGG 2 cut(s) 33, 411
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 2 cut(s) 74, 345
BseNI ACTGG 2 cut(s) 65, 327
BseRI GAGGAG 5 cut(s) 71, 254, 431, 434, 437
BseXI GCAGC 7 cut(s) 130, 454, 508, 547, 547, 568, 571
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 3 cut(s) 41, 266, 338
BsiEI CGRYCG 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 3 cut(s) 47, 263, 494
BsnI GGCC 3 cut(s) 41, 266, 338
BsoBI CYCGRG 1 cut(s) 396
Bsp119I TTCGAA 1 cut(s) 404
Bsp1286I GDGCHC 1 cut(s) 557
Bsp143I GATC 4 cut(s) 88, 168, 429, 546
BspACI CCGC 4 cut(s) 44, 141, 204, 359
BspANI GGCC 3 cut(s) 41, 266, 338
BspCNI CTCAG 2 cut(s) 75, 346
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 404
BsrBI CCGCTC 1 cut(s) 204
BsrFI RCCGGY 2 cut(s) 46, 493
BsrI ACTGG 2 cut(s) 65, 327
BssAI RCCGGY 2 cut(s) 46, 493
BssECI CCNNGG 2 cut(s) 33, 411
BssMI GATC 4 cut(s) 88, 168, 429, 546
BssT1I CCWWGG 1 cut(s) 411
Bst4CI ACNGT 2 cut(s) 34, 183
Bst6I CTCTTC 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 404
BstC8I GCNNGC 2 cut(s) 48, 495
BstDEI CTNAG 8 cut(s) 83, 354, 438, 444, 450, 456, 498, 564
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 522
BstHHI GCGC 2 cut(s) 380, 521
BstKTI GATC 4 cut(s) 91, 171, 432, 549
BstMBI GATC 4 cut(s) 88, 168, 429, 546
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 4 cut(s) 47, 112, 185, 535
BstV1I GCAGC 7 cut(s) 130, 454, 508, 547, 547, 568, 571
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 235
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 3 cut(s) 41, 266, 338
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 148
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 4 cut(s) 9, 72, 179, 261
Cac8I GCNNGC 2 cut(s) 48, 495
CfoI GCGC 2 cut(s) 380, 521
Cfr10I RCCGGY 2 cut(s) 46, 493
Cfr13I GGNCC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 235
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 8 cut(s) 83, 354, 438, 444, 450, 456, 498, 564
DpnI GATC 4 cut(s) 90, 170, 431, 548
DpnII GATC 4 cut(s) 88, 168, 429, 546
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 411
Eco147I AGGCCT 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 557
Eco47III AGCGCT 1 cut(s) 520
Eco57I CTGAAG 2 cut(s) 33, 113
Eco88I CYCGRG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 411
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 411
FaeI CATG 1 cut(s) 238
FaiI YATR 2 cut(s) 224, 236
FatI CATG 1 cut(s) 234
FauI CCCGC 3 cut(s) 51, 197, 352
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 7 cut(s) 144, 468, 522, 536, 561, 582, 585
FokI GGATG 1 cut(s) 135
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 7 cut(s) 144, 468, 522, 536, 561, 582, 585
GlaI GCGC 2 cut(s) 379, 520
GluI GCNGC 7 cut(s) 144, 468, 522, 536, 561, 582, 585
HaeII RGCGCY 1 cut(s) 522
HaeIII GGCC 3 cut(s) 41, 266, 338
HapII CCGG 3 cut(s) 47, 263, 494
HhaI GCGC 2 cut(s) 380, 521
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 2 cut(s) 378, 519
HinP1I GCGC 2 cut(s) 378, 519
HinfI GANTC 2 cut(s) 211, 280
HpaII CCGG 3 cut(s) 47, 263, 494
HphI GGTGA 1 cut(s) 490
Hpy188I TCNGA 6 cut(s) 30, 93, 165, 192, 307, 355
Hpy188III TCNNGA 3 cut(s) 274, 433, 550
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 3 cut(s) 88, 361, 571
HpyCH4III ACNGT 2 cut(s) 34, 183
HpyCH4V TGCA 2 cut(s) 292, 524
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 112, 185, 535
HpyF3I CTNAG 8 cut(s) 83, 354, 438, 444, 450, 456, 498, 564
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 2 cut(s) 378, 519
KroI GCCGGC 2 cut(s) 46, 493
KroNI GCCGGC 2 cut(s) 48, 495
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 4 cut(s) 88, 168, 429, 546
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 2 cut(s) 31, 475
LpnPI CCDG 7 cut(s) 60, 78, 269, 276, 308, 507, 570
Lsp1109I GCAGC 7 cut(s) 130, 454, 508, 547, 547, 568, 571
MaeIII GTNAC 1 cut(s) 478
MalI GATC 4 cut(s) 90, 170, 431, 548
MbiI CCGCTC 1 cut(s) 204
MboI GATC 4 cut(s) 88, 168, 429, 546
MfeI CAATTG 1 cut(s) 293
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 557
MluCI AATT 2 cut(s) 268, 293
MlyI GAGTC 2 cut(s) 220, 274
MmeI TCCRAC 1 cut(s) 53
MreI CGCCGGCG 1 cut(s) 46
MroNI GCCGGC 2 cut(s) 46, 493
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 3 cut(s) 47, 263, 494
MunI CAATTG 1 cut(s) 293
MwoI GCNNNNNNNGC 4 cut(s) 47, 112, 185, 535
NaeI GCCGGC 2 cut(s) 48, 495
NdeII GATC 4 cut(s) 88, 168, 429, 546
NgoMIV GCCGGC 2 cut(s) 46, 493
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 478
NspV TTCGAA 1 cut(s) 404
PaeR7I CTCGAG 1 cut(s) 396
PceI AGGCCT 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 194
PdiI GCCGGC 2 cut(s) 48, 495
PkrI GCNGC 7 cut(s) 145, 469, 523, 537, 562, 583, 586
PleI GAGTC 2 cut(s) 219, 274
PpsI GAGTC 2 cut(s) 219, 274
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 396
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SapI GCTCTTC 1 cut(s) 194
SatI GCNGC 7 cut(s) 144, 468, 522, 536, 561, 582, 585
Sau3AI GATC 4 cut(s) 88, 168, 429, 546
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 220, 274
SduI GDGCHC 1 cut(s) 557
SetI ASST 6 cut(s) 28, 84, 333, 403, 462, 480
Sfr274I CTCGAG 1 cut(s) 396
SfuI TTCGAA 1 cut(s) 404
SgrAI CRCCGGYG 1 cut(s) 46
SlaI CTCGAG 1 cut(s) 396
SmlI CTYRAG 1 cut(s) 396
SmoI CTYRAG 1 cut(s) 396
Sse9I AATT 2 cut(s) 268, 293
SseBI AGGCCT 1 cut(s) 338
SsiI CCGC 4 cut(s) 44, 141, 204, 359
StuI AGGCCT 1 cut(s) 338
StyI CCWWGG 1 cut(s) 411
TaaI ACNGT 2 cut(s) 34, 183
TaqI TCGA 6 cut(s) 21, 209, 397, 404, 515, 545
TasI AATT 2 cut(s) 268, 293
TatI WGTACW 1 cut(s) 231
TscAI CASTG 4 cut(s) 16, 72, 186, 261
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 7 cut(s) 143, 467, 521, 535, 560, 581, 584
Tsp45I GTSAC 1 cut(s) 478
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 4 cut(s) 16, 72, 186, 261
XhoI CTCGAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.