FvH4_1g12030

Histone H1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0013454
Physical Location & Seq
Forward (+)
6571872 .. 6573199
1328 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g12030.t1

Sequence Viewer

Length: 600 bp
ATGTCTGCCACCGAAGAAGTCGTTGCTCCGGCCGTGGAGGCCCCGCCGGCGACTGAAGAACCCAGCAAGTCTGAAGAGAAGCCGGCGAGGGAGAAGAAGCTGAAGGATCTGAAAGAGAAGAAGCCTAGACAGACCAAAACCAAACCCAAGACCGCTCCTCATCCTCCTTATTTTCAGATGATCAAGGAGGCACTGTTGGCTCTGAACGAGAAGAGCGGATCGAGCCCATACGCCATAGCCAAGTACATGGAGGAGAATCACAAGGCGCTTCCGGTCAATTTCAAGAAGACTCTGGCTTTGCAGCTGAAAAACTCGGAGGCCAGAGGGAAGCTGGTCAAGGTCAAGGCGTCCTACAAGTTGTCTGAGGCAGGGAAGAAGGACAAGAGCACAGGGAAAAGAACAACTCGAGCATCTTCCAAGCCCAAGGAGGAGGAGAATAAGAAGACTAAGTCTACTAGGACCAAGACTAAGACTAAGGCAGCTGCTGCTCCGAAGAAGAAGCAGGTTAAGAAGAACAAGAAATCGAGCGCTGCAAAGCCGAAGCAGCCCAAGTCGATCAAGAGCCCGGCTGCTAAGAAAGCCAAGAAAGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

200

Amino Acids

21.84

Weight (kDa)

10.25

Isoelectric Point (pI)

51.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 54 - 119 2.4e-16 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 493
AccBSI CCGCTC 2 cut(s) 155, 216
AccI GTMKAC 1 cut(s) 452
AciI CCGC 3 cut(s) 44, 153, 216
AclWI GGATC 2 cut(s) 114, 226
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 3 cut(s) 75, 93, 122
AcyI GRCGYC 1 cut(s) 347
AfaI GTAC 1 cut(s) 245
AfeI AGCGCT 1 cut(s) 529
AgsI TTSAA 1 cut(s) 283
AluBI AGCT 5 cut(s) 100, 304, 331, 482, 590
AluI AGCT 5 cut(s) 100, 304, 331, 482, 590
Alw21I GWGCWC 1 cut(s) 389
AlwI GGATC 2 cut(s) 114, 226
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 405
Aor51HI AGCGCT 1 cut(s) 529
AoxI GGCC 3 cut(s) 30, 39, 318
ApeKI GCWGC 9 cut(s) 301, 479, 482, 485, 530, 544, 569, 590, 593
ArsI GACNNNNNNTTYG 2 cut(s) 280, 312
AspLEI GCGC 2 cut(s) 268, 530
AspS9I GGNCC 2 cut(s) 40, 459
AsuC2I CCSGG 1 cut(s) 566
AvaI CYCGRG 1 cut(s) 405
AvaII GGWCC 1 cut(s) 459
BanII GRGCYC 2 cut(s) 227, 566
BbsI GAAGAC 2 cut(s) 293, 449
Bbv12I GWGCWC 1 cut(s) 389
BbvI GCAGC 9 cut(s) 313, 469, 472, 491, 517, 556, 556, 577, 580
BceAI ACGGC 1 cut(s) 17
BclI TGATCA 1 cut(s) 180
BcnI CCSGG 1 cut(s) 566
BfaI CTAG 2 cut(s) 126, 456
BfoI RGCGCY 2 cut(s) 269, 531
BfuAI ACCTGC 1 cut(s) 493
BglI GCCNNNNNGGC 2 cut(s) 38, 47
BisI GCNGC 9 cut(s) 302, 480, 483, 486, 531, 545, 570, 591, 594
BlsI GCNGC 9 cut(s) 303, 481, 484, 487, 532, 546, 571, 592, 595
Bme1390I CCNGG 1 cut(s) 566
Bme18I GGWCC 1 cut(s) 459
BmeT110I CYCGRG 1 cut(s) 405
BmgT120I GGNCC 2 cut(s) 40, 459
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 566
BmsI GCATC 1 cut(s) 419
BpiI GAAGAC 2 cut(s) 293, 449
BpuMI CCSGG 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 33, 423
BsaWI WCCGGW 1 cut(s) 271
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bse118I RCCGGY 2 cut(s) 46, 82
BseDI CCNNGG 2 cut(s) 33, 423
BseGI GGATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 354
BseRI GAGGAG 4 cut(s) 147, 266, 443, 446
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 9 cut(s) 313, 469, 472, 491, 517, 556, 556, 577, 580
BseYI CCCAGC 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 3 cut(s) 32, 41, 320
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 389
BsiHKCI CYCGRG 1 cut(s) 405
BsiSI CCGG 5 cut(s) 29, 47, 83, 272, 566
BsnI GGCC 3 cut(s) 32, 41, 320
BsoBI CYCGRG 1 cut(s) 405
Bsp1286I GDGCHC 3 cut(s) 227, 389, 566
Bsp143I GATC 4 cut(s) 106, 180, 218, 555
BspACI CCGC 3 cut(s) 44, 153, 216
BspANI GGCC 3 cut(s) 32, 41, 320
BspCNI CTCAG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 493
BspPI GGATC 2 cut(s) 114, 226
BspQI GCTCTTC 1 cut(s) 206
BsrBI CCGCTC 2 cut(s) 155, 216
BsrFI RCCGGY 2 cut(s) 46, 82
BssAI RCCGGY 2 cut(s) 46, 82
BssECI CCNNGG 2 cut(s) 33, 423
BssMI GATC 4 cut(s) 106, 180, 218, 555
BssNI GRCGYC 1 cut(s) 347
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 69, 206
BstACI GRCGYC 1 cut(s) 347
BstAPI GCANNNNNTGC 1 cut(s) 485
BstC8I GCNNGC 2 cut(s) 48, 84
BstDEI CTNAG 5 cut(s) 363, 447, 468, 474, 573
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 160
BstH2I RGCGCY 2 cut(s) 269, 531
BstHHI GCGC 2 cut(s) 268, 530
BstKTI GATC 4 cut(s) 109, 183, 221, 558
BstMBI GATC 4 cut(s) 106, 180, 218, 555
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 8 cut(s) 38, 47, 197, 222, 485, 544, 578, 587
BstSCI CCNGG 1 cut(s) 564
BstV1I GCAGC 9 cut(s) 313, 469, 472, 491, 517, 556, 556, 577, 580
BstV2I GAAGAC 2 cut(s) 293, 449
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 247
BstYI RGATCY 1 cut(s) 106
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 3 cut(s) 32, 41, 320
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 191
BveI ACCTGC 1 cut(s) 493
Cac8I GCNNGC 2 cut(s) 48, 84
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 268, 530
Cfr10I RCCGGY 2 cut(s) 46, 82
Cfr13I GGNCC 2 cut(s) 40, 459
CseI GACGC 1 cut(s) 336
Csp6I GTAC 1 cut(s) 244
CviAII CATG 1 cut(s) 247
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 5 cut(s) 363, 447, 468, 474, 573
DpnI GATC 4 cut(s) 108, 182, 220, 557
DpnII GATC 4 cut(s) 106, 180, 218, 555
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 69, 206
EarI CTCTTC 2 cut(s) 69, 206
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 2 cut(s) 227, 566
Eco47I GGWCC 1 cut(s) 459
Eco47III AGCGCT 1 cut(s) 529
Eco52I CGGCCG 1 cut(s) 30
Eco57I CTGAAG 3 cut(s) 75, 93, 122
Eco88I CYCGRG 1 cut(s) 405
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 2 cut(s) 227, 566
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 1 cut(s) 250
FaiI YATR 3 cut(s) 229, 236, 248
FatI CATG 1 cut(s) 246
FauI CCCGC 1 cut(s) 51
FbaI TGATCA 1 cut(s) 180
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 9 cut(s) 302, 480, 483, 486, 531, 545, 570, 591, 594
FokI GGATG 1 cut(s) 147
FriOI GRGCYC 2 cut(s) 227, 566
Fsp4HI GCNGC 9 cut(s) 302, 480, 483, 486, 531, 545, 570, 591, 594
FspBI CTAG 2 cut(s) 126, 456
GlaI GCGC 2 cut(s) 267, 529
GluI GCNGC 9 cut(s) 302, 480, 483, 486, 531, 545, 570, 591, 594
GsaI CCCAGC 1 cut(s) 66
HaeII RGCGCY 2 cut(s) 269, 531
HaeIII GGCC 3 cut(s) 32, 41, 320
HapII CCGG 5 cut(s) 29, 47, 83, 272, 566
HgaI GACGC 1 cut(s) 336
HhaI GCGC 2 cut(s) 268, 530
Hin1I GRCGYC 1 cut(s) 347
Hin1II CATG 1 cut(s) 250
Hin6I GCGC 2 cut(s) 266, 528
HinP1I GCGC 2 cut(s) 266, 528
HinfI GANTC 2 cut(s) 256, 289
HpaII CCGG 5 cut(s) 29, 47, 83, 272, 566
Hpy166II GTNNAC 1 cut(s) 453
Hpy188I TCNGA 7 cut(s) 73, 111, 177, 204, 316, 364, 492
Hpy188III TCNNGA 2 cut(s) 283, 559
Hpy8I GTNNAC 1 cut(s) 453
HpyAV CCTTC 2 cut(s) 97, 370
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 301, 533
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 47, 197, 222, 485, 544, 578, 587
HpyF3I CTNAG 5 cut(s) 363, 447, 468, 474, 573
Hsp92I GRCGYC 1 cut(s) 347
Hsp92II CATG 1 cut(s) 250
HspAI GCGC 2 cut(s) 266, 528
KroI GCCGGC 2 cut(s) 46, 82
KroNI GCCGGC 2 cut(s) 48, 84
Ksp22I TGATCA 1 cut(s) 180
Kzo9I GATC 4 cut(s) 106, 180, 218, 555
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 3 cut(s) 31, 160, 493
Lsp1109I GCAGC 9 cut(s) 313, 469, 472, 491, 517, 556, 556, 577, 580
LweI GCATC 1 cut(s) 419
MaeI CTAG 2 cut(s) 126, 456
MalI GATC 4 cut(s) 108, 182, 220, 557
MbiI CCGCTC 2 cut(s) 155, 216
MboI GATC 4 cut(s) 106, 180, 218, 555
MflI RGATCY 1 cut(s) 106
MhlI GDGCHC 3 cut(s) 227, 389, 566
MluCI AATT 1 cut(s) 277
MlyI GAGTC 1 cut(s) 283
MreI CGCCGGCG 1 cut(s) 46
MroNI GCCGGC 2 cut(s) 46, 82
MseI TTAA 1 cut(s) 507
MspA1I CMGCKG 2 cut(s) 304, 482
MspI CCGG 5 cut(s) 29, 47, 83, 272, 566
MspR9I CCNGG 1 cut(s) 566
MwoI GCNNNNNNNGC 8 cut(s) 38, 47, 197, 222, 485, 544, 578, 587
NaeI GCCGGC 2 cut(s) 48, 84
NciI CCSGG 1 cut(s) 566
NdeII GATC 4 cut(s) 106, 180, 218, 555
NgoMIV GCCGGC 2 cut(s) 46, 82
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 1 cut(s) 42
PaeR7I CTCGAG 1 cut(s) 405
PciSI GCTCTTC 1 cut(s) 206
PdiI GCCGGC 2 cut(s) 48, 84
PfeI GAWTC 1 cut(s) 256
PflFI GACNNNGTC 1 cut(s) 448
PkrI GCNGC 9 cut(s) 303, 481, 484, 487, 532, 546, 571, 592, 595
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 2 cut(s) 40, 459
PspXI VCTCGAGB 1 cut(s) 405
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 448
PvuII CAGCTG 2 cut(s) 304, 482
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 507
SatI GCNGC 9 cut(s) 302, 480, 483, 486, 531, 545, 570, 591, 594
Sau3AI GATC 4 cut(s) 106, 180, 218, 555
Sau96I GGNCC 2 cut(s) 40, 459
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 1 cut(s) 566
SduI GDGCHC 3 cut(s) 227, 389, 566
SetI ASST 7 cut(s) 102, 306, 333, 342, 484, 507, 592
SfaNI GCATC 1 cut(s) 419
SfiI GGCCNNNNNGGCC 1 cut(s) 38
Sfr274I CTCGAG 1 cut(s) 405
SgrAI CRCCGGYG 1 cut(s) 46
SinI GGWCC 1 cut(s) 459
SlaI CTCGAG 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 405
SmoI CTYRAG 1 cut(s) 405
Sse9I AATT 1 cut(s) 277
SsiI CCGC 3 cut(s) 44, 153, 216
SspMI CTAG 2 cut(s) 126, 456
StyD4I CCNGG 1 cut(s) 564
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 1 cut(s) 195
TaqI TCGA 4 cut(s) 221, 406, 524, 554
TasI AATT 1 cut(s) 277
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 1 cut(s) 256
Tru1I TTAA 1 cut(s) 507
Tru9I TTAA 1 cut(s) 507
TscAI CASTG 1 cut(s) 198
TseI GCWGC 9 cut(s) 301, 479, 482, 485, 530, 544, 569, 590, 593
TspRI CASTG 1 cut(s) 198
Tth111I GACNNNGTC 1 cut(s) 448
VpaK11BI GGWCC 1 cut(s) 459
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 452
XspI CTAG 2 cut(s) 126, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.