MD15G1247400.v1.1

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0013454
Physical Location & Seq
Forward (+)
20528054 .. 20529300
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1247400.v1.1.491

Sequence Viewer

Length: 573 bp
ATGTCAGTCACCGAAGAAGCTCAAGCACCCGCCGTGGATGCCCCACCGCCAGAGGAGGCTCCGGTGACGGAGGAGCCCAAGCAGGAAGAAAAGCCAACTAGGCAGACGAAACCCAGGACTCCAAAAGAGAGGAAGCCTGCACAGCCAAAACCCAAAACCAAAACCGCCGCTCATCCTCCATACTTTCAGATGATAATGGAAGCACTTATGGCGCTGAACGAGAAGAGCGGGTCGAGTCCGTACGCCATAGCAAAGCACATGGAGGAGAAGCACAAGGCGGTGCTCCCGGCGAACTTCAGGAAGACTCTGGCACTGCAGCTGAAGAACTCGGCGGCGAGAGGAAAGTTGATCAAGATCAGAGCCTCGTACAAGCTCTCCGAGGCGGGCAAGAAGGAGAAATCGACAGCCAAAACAAGCGCCGTTTCGAAACCAAAAGCGGAGAAGAAGACCAAAACGACCTCCTCTGCTAAGAAGCCCGGGAAAAAGAACAAGATGTCAACCGCCGCGAAGCCCAAGCAGCCCAAGTCGATCAAGAGCTCTGCTGCTAAGAAATCGAAGAAGTCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

191

Amino Acids

20.65

Weight (kDa)

10.25

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 58 - 122 6.3e-15 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 170, 228
AccII CGCG 1 cut(s) 506
AcuI CTGAAG 2 cut(s) 280, 341
AfaI GTAC 2 cut(s) 242, 368
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 4 cut(s) 20, 319, 373, 537
AluI AGCT 4 cut(s) 20, 319, 373, 537
Alw21I GWGCWC 2 cut(s) 285, 539
Ama87I CYCGRG 1 cut(s) 476
ApeKI GCWGC 4 cut(s) 316, 517, 542, 566
AspLEI GCGC 2 cut(s) 214, 419
AsuC2I CCSGG 3 cut(s) 287, 477, 478
AsuHPI GGTGA 1 cut(s) 76
AsuII TTCGAA 1 cut(s) 425
AvaI CYCGRG 1 cut(s) 476
BanII GRGCYC 2 cut(s) 78, 539
BbsI GAAGAC 2 cut(s) 308, 452
Bbv12I GWGCWC 2 cut(s) 285, 539
BbvI GCAGC 4 cut(s) 328, 529, 529, 553
BceAI ACGGC 2 cut(s) 17, 404
BciT130I CCWGG 1 cut(s) 115
BclI TGATCA 1 cut(s) 348
BcnI CCSGG 3 cut(s) 287, 477, 478
BfaI CTAG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 314
BfoI RGCGCY 2 cut(s) 215, 420
BglI GCCNNNNNGGC 1 cut(s) 100
BisI GCNGC 7 cut(s) 168, 317, 333, 504, 518, 543, 567
BlsI GCNGC 7 cut(s) 169, 318, 334, 505, 519, 544, 568
Bme1390I CCNGG 4 cut(s) 115, 287, 477, 478
BmeT110I CYCGRG 1 cut(s) 476
BmiI GGNNCC 2 cut(s) 60, 75
BmrFI CCNGG 4 cut(s) 115, 287, 477, 478
BmsI GCATC 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 308, 452
Bpu14I TTCGAA 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 6
BpuMI CCSGG 3 cut(s) 287, 477, 478
BsaBI GATNNNNATC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 33, 113, 378, 476
BsaWI WCCGGW 1 cut(s) 61
BsaXI ACNNNNNCTCC 2 cut(s) 359, 389
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 4 cut(s) 33, 113, 378, 476
BseGI GGATG 2 cut(s) 43, 172
BseJI GATNNNNATC 1 cut(s) 353
BseRI GAGGAG 4 cut(s) 68, 86, 278, 451
BseXI GCAGC 4 cut(s) 328, 529, 529, 553
BsgI GTGCAG 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 506
BsiHKAI GWGCWC 2 cut(s) 285, 539
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 3 cut(s) 62, 287, 477
BsiWI CGTACG 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 476
Bsp119I TTCGAA 1 cut(s) 425
Bsp1286I GDGCHC 3 cut(s) 78, 285, 539
Bsp143I GATC 3 cut(s) 348, 354, 528
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 2 cut(s) 60, 75
BspMAI CTGCAG 1 cut(s) 318
BspQI GCTCTTC 1 cut(s) 218
BspT104I TTCGAA 1 cut(s) 425
BsrBI CCGCTC 2 cut(s) 170, 228
BssECI CCNNGG 4 cut(s) 33, 113, 378, 476
BssMI GATC 3 cut(s) 348, 354, 528
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 218
BstBI TTCGAA 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 138, 385
BstDEI CTNAG 2 cut(s) 468, 546
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 43, 172
BstFNI CGCG 1 cut(s) 506
BstH2I RGCGCY 2 cut(s) 215, 420
BstHHI GCGC 2 cut(s) 214, 419
BstKTI GATC 3 cut(s) 351, 357, 531
BstMBI GATC 3 cut(s) 348, 354, 528
BstMWI GCNNNNNNNGC 5 cut(s) 38, 100, 142, 209, 517
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 4 cut(s) 113, 285, 475, 476
BstSFI CTRYAG 1 cut(s) 314
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 4 cut(s) 328, 529, 529, 553
BstV2I GAAGAC 2 cut(s) 308, 452
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 43, 172
BtsI GCAGTG 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 311
Cac8I GCNNGC 2 cut(s) 138, 385
CfoI GCGC 2 cut(s) 214, 419
Cfr9I CCCGGG 1 cut(s) 476
Csp6I GTAC 2 cut(s) 241, 367
CviAII CATG 1 cut(s) 259
CviQI GTAC 2 cut(s) 241, 367
DdeI CTNAG 2 cut(s) 468, 546
DpnI GATC 3 cut(s) 350, 356, 530
DpnII GATC 3 cut(s) 348, 354, 528
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 537
Eco24I GRGCYC 2 cut(s) 78, 539
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 2 cut(s) 280, 341
Eco88I CYCGRG 1 cut(s) 476
EcoICRI GAGCTC 1 cut(s) 537
EcoRII CCWGG 1 cut(s) 113
EcoT38I GRGCYC 2 cut(s) 78, 539
FaeI CATG 1 cut(s) 262
FaiI YATR 4 cut(s) 181, 209, 248, 260
FatI CATG 1 cut(s) 258
FauI CCCGC 3 cut(s) 37, 221, 376
FbaI TGATCA 1 cut(s) 348
Fnu4HI GCNGC 7 cut(s) 168, 317, 333, 504, 518, 543, 567
FokI GGATG 2 cut(s) 50, 159
FriOI GRGCYC 2 cut(s) 78, 539
Fsp4HI GCNGC 7 cut(s) 168, 317, 333, 504, 518, 543, 567
FspBI CTAG 1 cut(s) 99
GlaI GCGC 2 cut(s) 213, 418
GluI GCNGC 7 cut(s) 168, 317, 333, 504, 518, 543, 567
HaeII RGCGCY 2 cut(s) 215, 420
HapII CCGG 3 cut(s) 62, 287, 477
HhaI GCGC 2 cut(s) 214, 419
Hin1II CATG 1 cut(s) 262
Hin6I GCGC 2 cut(s) 212, 417
HinP1I GCGC 2 cut(s) 212, 417
HincII GTYRAC 1 cut(s) 498
HindII GTYRAC 1 cut(s) 498
HinfI GANTC 3 cut(s) 118, 235, 304
HpaII CCGG 3 cut(s) 62, 287, 477
HphI GGTGA 1 cut(s) 76
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 3 cut(s) 189, 359, 379
Hpy188III TCNNGA 3 cut(s) 298, 352, 532
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 1 cut(s) 385
HpyCH4V TGCA 2 cut(s) 140, 316
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 100, 142, 209, 517
HpyF3I CTNAG 2 cut(s) 468, 546
Hsp92II CATG 1 cut(s) 262
HspAI GCGC 2 cut(s) 212, 417
Ksp22I TGATCA 1 cut(s) 348
Kzo9I GATC 3 cut(s) 348, 354, 528
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 3 cut(s) 64, 73, 288
Lsp1109I GCAGC 4 cut(s) 328, 529, 529, 553
LweI GCATC 1 cut(s) 28
MaeI CTAG 1 cut(s) 99
MaeIII GTNAC 2 cut(s) 7, 64
MalI GATC 3 cut(s) 350, 356, 530
MbiI CCGCTC 2 cut(s) 170, 228
MboI GATC 3 cut(s) 348, 354, 528
MboII GAAGA 8 cut(s) 26, 98, 235, 313, 334, 454, 457, 568
MhlI GDGCHC 3 cut(s) 78, 285, 539
MlyI GAGTC 3 cut(s) 112, 244, 298
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 3 cut(s) 62, 287, 477
MspR9I CCNGG 4 cut(s) 115, 287, 477, 478
MvaI CCWGG 1 cut(s) 115
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 5 cut(s) 38, 100, 142, 209, 517
NciI CCSGG 3 cut(s) 287, 477, 478
NdeII GATC 3 cut(s) 348, 354, 528
NlaIII CATG 1 cut(s) 262
NlaIV GGNNCC 2 cut(s) 60, 75
NmeAIII GCCGAG 1 cut(s) 308
NmuCI GTSAC 2 cut(s) 7, 64
NspV TTCGAA 1 cut(s) 425
PciSI GCTCTTC 1 cut(s) 218
Pfl23II CGTACG 1 cut(s) 240
PkrI GCNGC 7 cut(s) 169, 318, 334, 505, 519, 544, 568
PleI GAGTC 3 cut(s) 112, 243, 298
PpsI GAGTC 3 cut(s) 112, 243, 298
Psp124BI GAGCTC 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspLI CGTACG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 60, 75
PstI CTGCAG 1 cut(s) 318
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 2 cut(s) 242, 368
RsaNI GTAC 2 cut(s) 241, 367
SacI GAGCTC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 218
SatI GCNGC 7 cut(s) 168, 317, 333, 504, 518, 543, 567
Sau3AI GATC 3 cut(s) 348, 354, 528
SchI GAGTC 3 cut(s) 112, 244, 298
ScrFI CCNGG 4 cut(s) 115, 287, 477, 478
SduI GDGCHC 3 cut(s) 78, 285, 539
SetI ASST 5 cut(s) 22, 321, 375, 461, 539
SfaNI GCATC 1 cut(s) 28
SfcI CTRYAG 1 cut(s) 314
SfuI TTCGAA 1 cut(s) 425
SmaI CCCGGG 1 cut(s) 478
SmlI CTYRAG 1 cut(s) 21
SmoI CTYRAG 1 cut(s) 21
SspMI CTAG 1 cut(s) 99
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 4 cut(s) 113, 285, 475, 476
TaqI TCGA 5 cut(s) 233, 401, 425, 527, 554
TauI GCSGC 3 cut(s) 170, 335, 506
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 2 cut(s) 7, 64
TseI GCWGC 4 cut(s) 316, 517, 542, 566
Tsp45I GTSAC 2 cut(s) 7, 64
TspGWI ACGGA 2 cut(s) 83, 228
TspMI CCCGGG 1 cut(s) 476
TspRI CASTG 1 cut(s) 318
XmaI CCCGGG 1 cut(s) 476
XspI CTAG 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.