Prupe.7G166400_v2.0.a1

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013454
Physical Location & Seq
Reverse (-)
17024228 .. 17025479
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G166400.1

Sequence Viewer

Length: 573 bp
ATGTCAGCCACAGAAGTTGTTCAGGCTCCGGCCGTTGAGGCCCCGCCGGCGGTGGAGGCTCCAGCGATGGAGGAGCCCAAAAAAGAAGAAAAGCCGGTCAAAGAGAGAAAGACGAGAACCCCAAGGGAGAAGAAGCCTAAAGAGCCCAAAACCGCTGCTCATCCTCCATACTTTCAGATGATAAAGGAGGCACTGTTGTCTCTGAACGAGAAGAGCGGGTCCAGTCCTTACGCCATAGCCAAGTACATGGAGGAGAAGCACAAGGCGGTGCTTCCTTCCAACTTCAAGAAGACCCTGGCTCTGCAACTGAAGAACTCTGCGGCGAGAGGCAAGCTGATCAAGATCAGGGCCTCGTACAAGCTCTCTGAGGCAGGCAAGAAGGACAAAACCACAGGCAAAACCAAGGCTTCAACAAAACCCAAAACGGAGAAAAAGACCAAAACGACCGCCCCTGCTCCGAAGGCGACTAAGAAGCCTGCGAAGAAGAACAAGAAGTCCACGGCTTCTAAGCCTAAGCAGCCCAAGTCCATCAAGAGCCCAGCTGCTAAGAAACCCAAGAAGGCTGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

191

Amino Acids

20.73

Weight (kDa)

10.27

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 216
AciI CCGC 7 cut(s) 44, 50, 153, 216, 266, 320, 447
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 329
AfaI GTAC 2 cut(s) 245, 356
AfiI CCNNNNNNNGG 1 cut(s) 49
AgsI TTSAA 2 cut(s) 286, 411
AjnI CCWGG 1 cut(s) 294
AloI GAACNNNNNNTCC 2 cut(s) 479, 511
AluBI AGCT 3 cut(s) 334, 361, 542
AluI AGCT 3 cut(s) 334, 361, 542
Alw26I GTCTC 1 cut(s) 204
AoxI GGCC 3 cut(s) 30, 39, 348
ApeKI GCWGC 3 cut(s) 155, 517, 542
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 3 cut(s) 40, 219, 348
AvaII GGWCC 1 cut(s) 219
BanII GRGCYC 3 cut(s) 78, 147, 539
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 3 cut(s) 142, 529, 529
BccI CCATC 2 cut(s) 61, 536
BceAI ACGGC 2 cut(s) 17, 516
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 1 cut(s) 336
BcoDI GTCTC 1 cut(s) 204
BglI GCCNNNNNGGC 2 cut(s) 38, 47
BisI GCNGC 4 cut(s) 156, 321, 518, 543
BlsI GCNGC 4 cut(s) 157, 322, 519, 544
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 219
BmgT120I GGNCC 3 cut(s) 40, 219, 348
BmiI GGNNCC 5 cut(s) 27, 42, 60, 75, 220
BmrFI CCNGG 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 296
BpmI CTGGAG 1 cut(s) 45
Bpu10I CCTNAGC 1 cut(s) 513
BsaBI GATNNNNATC 1 cut(s) 341
BsaJI CCNNGG 4 cut(s) 122, 294, 402, 498
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 49
Bse118I RCCGGY 2 cut(s) 46, 94
Bse1I ACTGG 1 cut(s) 222
Bse8I GATNNNNATC 1 cut(s) 341
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 4 cut(s) 122, 294, 402, 498
BseGI GGATG 1 cut(s) 160
BseJI GATNNNNATC 1 cut(s) 341
BseLI CCNNNNNNNGG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 2 cut(s) 86, 266
BseX3I CGGCCG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 142, 529, 529
BseYI CCCAGC 1 cut(s) 538
Bsh1285I CGRYCG 2 cut(s) 33, 447
BshFI GGCC 3 cut(s) 32, 41, 350
BsiEI CGRYCG 2 cut(s) 33, 447
BsiSI CCGG 3 cut(s) 29, 47, 95
BslI CCNNNNNNNGG 1 cut(s) 49
BsmAI GTCTC 1 cut(s) 204
BsnI GGCC 3 cut(s) 32, 41, 350
Bsp1286I GDGCHC 3 cut(s) 78, 147, 539
Bsp143I GATC 2 cut(s) 336, 342
BspACI CCGC 7 cut(s) 44, 50, 153, 216, 266, 320, 447
BspANI GGCC 3 cut(s) 32, 41, 350
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 5 cut(s) 27, 42, 60, 75, 220
BspQI GCTCTTC 1 cut(s) 206
BsrBI CCGCTC 1 cut(s) 216
BsrFI RCCGGY 2 cut(s) 46, 94
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 2 cut(s) 46, 94
BssECI CCNNGG 4 cut(s) 122, 294, 402, 498
BssMI GATC 2 cut(s) 336, 342
BssT1I CCWWGG 2 cut(s) 122, 402
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 1 cut(s) 206
BstC8I GCNNGC 4 cut(s) 48, 332, 373, 477
BstDEI CTNAG 5 cut(s) 366, 468, 507, 513, 546
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 2 cut(s) 339, 345
BstMAI GTCTC 1 cut(s) 204
BstMBI GATC 2 cut(s) 336, 342
BstMCI CGRYCG 2 cut(s) 33, 447
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 56, 142, 461, 517
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 142, 529, 529
BstV2I GAAGAC 1 cut(s) 296
BstXI CCANNNNNNTGG 1 cut(s) 247
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 3 cut(s) 32, 41, 350
BtgI CCRYGG 1 cut(s) 498
BtgZI GCGATG 1 cut(s) 80
BtsCI GGATG 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 4 cut(s) 48, 332, 373, 477
Cfr10I RCCGGY 2 cut(s) 46, 94
Cfr13I GGNCC 3 cut(s) 40, 219, 348
Csp6I GTAC 2 cut(s) 244, 355
CspCI CAANNNNNGTGG 1 cut(s) 33
CviAII CATG 1 cut(s) 247
CviQI GTAC 2 cut(s) 244, 355
DdeI CTNAG 5 cut(s) 366, 468, 507, 513, 546
DpnI GATC 2 cut(s) 338, 344
DpnII GATC 2 cut(s) 336, 342
EaeI YGGCCR 1 cut(s) 30
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 206
EarI CTCTTC 1 cut(s) 206
EclXI CGGCCG 1 cut(s) 30
Eco130I CCWWGG 2 cut(s) 122, 402
Eco24I GRGCYC 3 cut(s) 78, 147, 539
Eco47I GGWCC 1 cut(s) 219
Eco52I CGGCCG 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 329
EcoO109I RGGNCCY 2 cut(s) 40, 348
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 2 cut(s) 122, 402
EcoT38I GRGCYC 3 cut(s) 78, 147, 539
ErhI CCWWGG 2 cut(s) 122, 402
FaeI CATG 1 cut(s) 250
FaiI YATR 3 cut(s) 169, 236, 248
FatI CATG 1 cut(s) 246
FauI CCCGC 2 cut(s) 51, 209
FbaI TGATCA 1 cut(s) 336
Fnu4HI GCNGC 4 cut(s) 156, 321, 518, 543
FokI GGATG 1 cut(s) 147
FriOI GRGCYC 3 cut(s) 78, 147, 539
Fsp4HI GCNGC 4 cut(s) 156, 321, 518, 543
GluI GCNGC 4 cut(s) 156, 321, 518, 543
GsaI CCCAGC 1 cut(s) 542
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 3 cut(s) 32, 41, 350
HapII CCGG 3 cut(s) 29, 47, 95
Hin1II CATG 1 cut(s) 250
HpaII CCGG 3 cut(s) 29, 47, 95
Hpy166II GTNNAC 1 cut(s) 498
Hpy188I TCNGA 4 cut(s) 177, 204, 367, 459
Hpy188III TCNNGA 3 cut(s) 286, 340, 532
Hpy8I GTNNAC 1 cut(s) 498
HpyAV CCTTC 4 cut(s) 285, 373, 454, 553
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 304
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 56, 142, 461, 517
HpyF3I CTNAG 5 cut(s) 366, 468, 507, 513, 546
Hsp92II CATG 1 cut(s) 250
KroI GCCGGC 1 cut(s) 46
KroNI GCCGGC 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 336
Kzo9I GATC 2 cut(s) 336, 342
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 4 cut(s) 31, 64, 73, 460
Lsp1109I GCAGC 3 cut(s) 142, 529, 529
MalI GATC 2 cut(s) 338, 344
MbiI CCGCTC 1 cut(s) 216
MboI GATC 2 cut(s) 336, 342
MboII GAAGA 7 cut(s) 98, 142, 223, 301, 322, 493, 496
MhlI GDGCHC 3 cut(s) 78, 147, 539
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 9 cut(s) 31, 49, 64, 174, 181, 244, 320, 361, 361
MreI CGCCGGCG 1 cut(s) 46
MroNI GCCGGC 1 cut(s) 46
MroXI GAANNNNTTC 1 cut(s) 18
MspA1I CMGCKG 2 cut(s) 155, 542
MspI CCGG 3 cut(s) 29, 47, 95
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 56, 142, 461, 517
NaeI GCCGGC 1 cut(s) 48
NdeII GATC 2 cut(s) 336, 342
NgoMIV GCCGGC 1 cut(s) 46
NlaIII CATG 1 cut(s) 250
NlaIV GGNNCC 5 cut(s) 27, 42, 60, 75, 220
PciSI GCTCTTC 1 cut(s) 206
PdiI GCCGGC 1 cut(s) 48
PdmI GAANNNNTTC 1 cut(s) 18
PkrI GCNGC 4 cut(s) 157, 322, 519, 544
Psp6I CCWGG 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 538
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 5 cut(s) 27, 42, 60, 75, 220
PspPI GGNCC 3 cut(s) 40, 219, 348
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 2 cut(s) 245, 356
RsaNI GTAC 2 cut(s) 244, 355
SapI GCTCTTC 1 cut(s) 206
SatI GCNGC 4 cut(s) 156, 321, 518, 543
Sau3AI GATC 2 cut(s) 336, 342
Sau96I GGNCC 3 cut(s) 40, 219, 348
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 3 cut(s) 78, 147, 539
SetI ASST 3 cut(s) 336, 363, 544
SfiI GGCCNNNNNGGCC 1 cut(s) 38
SgrAI CRCCGGYG 1 cut(s) 46
SinI GGWCC 1 cut(s) 219
SsiI CCGC 7 cut(s) 44, 50, 153, 216, 266, 320, 447
StyD4I CCNGG 1 cut(s) 294
StyI CCWWGG 2 cut(s) 122, 402
TaaI ACNGT 1 cut(s) 195
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 323
TscAI CASTG 1 cut(s) 198
TseI GCWGC 3 cut(s) 155, 517, 542
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.