Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005120.1

Orthogroup ID

OG0013454

Physical Location & Seq

Genomic Coordinates Forward (+)

85274 .. 85724

Gene Structure 451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005120.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 365 bp

atgtctgccaccgaagaagtcgaagctccgaccgtggaggccccgccgacgacggaggagaagccggtgagggagaaaaagctgagggatctgaaggagaagaagcccaaacagcccaaaaccaaaaccaaacccaaaaccgctgctcatcctccctattttcagatgatcaaagaggcactgttggctctgaacgagaagagcgggtcgagtccttacgccatagccaagtacatggaggagaagcacaaggcggtgcttccggccaatttcaagaagactctggctctgcaattgaagaactcggaggcgagagggaaactggtcaaggtcaaggcctcttacaagttgtctgaggcggggaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Linker_histone

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

9.77

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013454)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18050 AT2G18050
fragaria_vesca	FvH4_1g12030
malus_domestica	MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica	Prupe.7G166400_v2.0.a1
pyrus_communis	pycom02g10600 pycom15g21750
rosa_chinensis	RchiOBHm_Chr2g0099661
rosa_laevigata	RLG00000016902
rosa_multiflora	Rmu_sc0005120.1_g000018
rosa_roxburghii	Rroxscaffold_2G00142870
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana	Rw2G010170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	204
AciI	CCGC	5 cut(s)	44, 141, 204, 254, 359
AclWI	GGATC	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	264
AcuI	CTGAAG	1 cut(s)	113
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	274, 298
AluBI	AGCT	2 cut(s)	26, 82
AluI	AGCT	2 cut(s)	26, 82
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	3 cut(s)	39, 264, 336
ApeKI	GCWGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	284
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	130
BclI	TGATCA	1 cut(s)	168
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	284
Bpu10I	CCTNAGC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	33
Bse118I	RCCGGY	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	327
BseDI	CCNNGG	1 cut(s)	33
BseGI	GGATG	1 cut(s)	148
BseMII	CTCAG	2 cut(s)	74, 345
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	2 cut(s)	71, 254
BseXI	GCAGC	1 cut(s)	130
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	41, 266, 338
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	2 cut(s)	65, 263
BsnI	GGCC	3 cut(s)	41, 266, 338
Bsp143I	GATC	2 cut(s)	88, 168
BspACI	CCGC	5 cut(s)	44, 141, 204, 254, 359
BspANI	GGCC	3 cut(s)	41, 266, 338
BspCNI	CTCAG	2 cut(s)	75, 346
BspLI	GGNNCC	1 cut(s)	42
BspPI	GGATC	1 cut(s)	96
BspQI	GCTCTTC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	204
BsrFI	RCCGGY	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	327
BssAI	RCCGGY	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	33
BssMI	GATC	2 cut(s)	88, 168
Bst4CI	ACNGT	2 cut(s)	34, 183
Bst6I	CTCTTC	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	83, 354
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	2 cut(s)	91, 171
BstMBI	GATC	2 cut(s)	88, 168
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	2 cut(s)	112, 185
BstV1I	GCAGC	1 cut(s)	130
BstV2I	GAAGAC	1 cut(s)	284
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	88
BsuRI	GGCC	3 cut(s)	41, 266, 338
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	235
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	83, 354
DpnI	GATC	2 cut(s)	90, 170
DpnII	GATC	2 cut(s)	88, 168
EaeI	YGGCCR	1 cut(s)	264
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	113
EcoO109I	RGGNCCY	1 cut(s)	40
FaeI	CATG	1 cut(s)	238
FaiI	YATR	2 cut(s)	224, 236
FatI	CATG	1 cut(s)	234
FauI	CCCGC	3 cut(s)	51, 197, 352
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	3 cut(s)	41, 266, 338
HapII	CCGG	2 cut(s)	65, 263
Hin1II	CATG	1 cut(s)	238
HinfI	GANTC	2 cut(s)	211, 280
HpaII	CCGG	2 cut(s)	65, 263
HphI	GGTGA	1 cut(s)	79
Hpy188I	TCNGA	6 cut(s)	30, 93, 165, 192, 307, 355
Hpy188III	TCNNGA	1 cut(s)	274
Hpy99I	CGWCG	2 cut(s)	52, 55
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	2 cut(s)	34, 183
HpyCH4V	TGCA	1 cut(s)	292
HpyF10VI	GCNNNNNNNGC	2 cut(s)	112, 185
HpyF3I	CTNAG	2 cut(s)	83, 354
Hsp92II	CATG	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	88, 168
LguI	GCTCTTC	1 cut(s)	194
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	4 cut(s)	78, 269, 276, 308
Lsp1109I	GCAGC	1 cut(s)	130
MalI	GATC	2 cut(s)	90, 170
MbiI	CCGCTC	1 cut(s)	204
MboI	GATC	2 cut(s)	88, 168
MboII	GAAGA	5 cut(s)	26, 112, 211, 289, 310
MfeI	CAATTG	1 cut(s)	293
MflI	RGATCY	1 cut(s)	88
MluCI	AATT	2 cut(s)	268, 293
MlyI	GAGTC	2 cut(s)	220, 274
MmeI	TCCRAC	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	2 cut(s)	65, 263
MunI	CAATTG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	112, 185
NdeII	GATC	2 cut(s)	88, 168
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	338
PciSI	GCTCTTC	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	2 cut(s)	219, 274
PpsI	GAGTC	2 cut(s)	219, 274
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	88
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SapI	GCTCTTC	1 cut(s)	194
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	88, 168
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	220, 274
SetI	ASST	3 cut(s)	28, 84, 333
Sse9I	AATT	2 cut(s)	268, 293
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	5 cut(s)	44, 141, 204, 254, 359
StuI	AGGCCT	1 cut(s)	338
TaaI	ACNGT	2 cut(s)	34, 183
TaqI	TCGA	2 cut(s)	21, 209
TasI	AATT	2 cut(s)	268, 293
TatI	WGTACW	1 cut(s)	231
TscAI	CASTG	1 cut(s)	186
TseI	GCWGC	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	68
TspRI	CASTG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.