RLG00000016902

Histone H1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013454
Physical Location & Seq
Forward (+)
11088742 .. 11089400
659 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016902

Sequence Viewer

Length: 579 bp
ATGTCTGCCACCGAAGAAGTCGAAGCTCCGACCGTGGAGGCCCCACCGTCAACGGAGGAGAAGCCGGTGAGGGAGAAAAAGCTCAGGGATCTGAAGGAGAAGAAGCCCAAACAGCCCAAAACCAAACCCAAAACCGCTGCTCATCCTCCCTACTTTCAGATGATCAAAGAGGCACTGTTGGCTCTGAACGAGAAGAGCGGGTCGAGTCCTTACGCCATAGCCAAGTACATGGAGGAGAAGCACAAGGCGGTGCTTCCGGCCAATTTCAAGAAGACTCTGGCTCTGCAATTGAAGAACTCGGAGGCGAGAGGGAAACTGGTCAAGGTCAAGGCCTCTTACAAGTTGTCTGAGGCGGGGAAGAAGGACAAGAGCGCGAGCAAAAGAACAACTCGAGCTTCGAAGCCCAAGGAGGAGGAGAAGAAGACTAGGACTAAGACTAAGACTAAGGCGTCTGCTGCTTCAAAGGTGACGAAGAAGAAGCCGGCTAAGAAGAATAAGAAATCGAGCGCTGCAAAGCCGAAGCAACCCAAGTCGATCAAGAGCCCTGCTGCTAAGAAACCCAAGAAGGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

193

Amino Acids

21.13

Weight (kDa)

10.28

Isoelectric Point (pI)

44.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 48 - 114 1.2e-16 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 448
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 1 cut(s) 374
AciI CCGC 4 cut(s) 135, 198, 248, 353
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 113
AcyI GRCGYC 1 cut(s) 449
AfaI GTAC 1 cut(s) 227
AfeI AGCGCT 1 cut(s) 508
AgsI TTSAA 3 cut(s) 268, 292, 462
AluBI AGCT 3 cut(s) 26, 82, 395
AluI AGCT 3 cut(s) 26, 82, 395
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 390
Aor51HI AGCGCT 1 cut(s) 508
AoxI GGCC 3 cut(s) 39, 258, 330
ApeKI GCWGC 6 cut(s) 137, 455, 509, 548, 569, 572
AspLEI GCGC 2 cut(s) 374, 509
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 2 cut(s) 79, 478
AsuII TTCGAA 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 390
BanII GRGCYC 1 cut(s) 545
BbsI GAAGAC 2 cut(s) 278, 428
BbvI GCAGC 6 cut(s) 124, 442, 496, 535, 556, 559
BclI TGATCA 1 cut(s) 162
BfaI CTAG 1 cut(s) 426
BfoI RGCGCY 1 cut(s) 510
BisI GCNGC 6 cut(s) 138, 456, 510, 549, 570, 573
BlsI GCNGC 6 cut(s) 139, 457, 511, 550, 571, 574
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 42
BpiI GAAGAC 2 cut(s) 278, 428
Bpu10I CCTNAGC 1 cut(s) 83
Bpu14I TTCGAA 1 cut(s) 398
BsaHI GRCGYC 1 cut(s) 449
BsaJI CCNNGG 2 cut(s) 33, 405
Bse118I RCCGGY 2 cut(s) 64, 481
Bse1I ACTGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 33, 405
BseGI GGATG 1 cut(s) 142
BseMII CTCAG 2 cut(s) 97, 339
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 4 cut(s) 71, 248, 425, 428
BseXI GCAGC 6 cut(s) 124, 442, 496, 535, 556, 559
Bsh1236I CGCG 1 cut(s) 374
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 3 cut(s) 41, 260, 332
BsiEI CGRYCG 1 cut(s) 33
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 3 cut(s) 65, 257, 482
BsnI GGCC 3 cut(s) 41, 260, 332
BsoBI CYCGRG 1 cut(s) 390
Bsp119I TTCGAA 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 3 cut(s) 88, 162, 534
BspACI CCGC 4 cut(s) 135, 198, 248, 353
BspANI GGCC 3 cut(s) 41, 260, 332
BspCNI CTCAG 2 cut(s) 96, 340
BspFNI CGCG 1 cut(s) 374
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 1 cut(s) 96
BspQI GCTCTTC 1 cut(s) 188
BspT104I TTCGAA 1 cut(s) 398
BsrBI CCGCTC 1 cut(s) 198
BsrFI RCCGGY 2 cut(s) 64, 481
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 2 cut(s) 64, 481
BssECI CCNNGG 2 cut(s) 33, 405
BssMI GATC 3 cut(s) 88, 162, 534
BssNI GRCGYC 1 cut(s) 449
BssT1I CCWWGG 1 cut(s) 405
Bst4CI ACNGT 3 cut(s) 34, 48, 177
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 449
BstBI TTCGAA 1 cut(s) 398
BstC8I GCNNGC 2 cut(s) 376, 483
BstDEI CTNAG 7 cut(s) 83, 348, 432, 438, 444, 486, 552
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 142
BstFNI CGCG 1 cut(s) 374
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 2 cut(s) 374, 509
BstKTI GATC 3 cut(s) 91, 165, 537
BstMBI GATC 3 cut(s) 88, 162, 534
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 3 cut(s) 112, 179, 455
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 6 cut(s) 124, 442, 496, 535, 556, 559
BstV2I GAAGAC 2 cut(s) 278, 428
BstX2I RGATCY 1 cut(s) 88
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 3 cut(s) 41, 260, 332
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 173
Cac8I GCNNGC 2 cut(s) 376, 483
CfoI GCGC 2 cut(s) 374, 509
Cfr10I RCCGGY 2 cut(s) 64, 481
Cfr13I GGNCC 1 cut(s) 40
CseI GACGC 1 cut(s) 438
Csp6I GTAC 1 cut(s) 226
CviAII CATG 1 cut(s) 229
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 7 cut(s) 83, 348, 432, 438, 444, 486, 552
DpnI GATC 3 cut(s) 90, 164, 536
DpnII GATC 3 cut(s) 88, 162, 534
DrdI GACNNNNNNGTC 1 cut(s) 448
DseDI GACNNNNNNGTC 1 cut(s) 448
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 405
Eco147I AGGCCT 1 cut(s) 332
Eco24I GRGCYC 1 cut(s) 545
Eco47III AGCGCT 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 113
Eco88I CYCGRG 1 cut(s) 390
EcoO109I RGGNCCY 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 405
EcoT38I GRGCYC 1 cut(s) 545
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 1 cut(s) 232
FaiI YATR 2 cut(s) 218, 230
FatI CATG 1 cut(s) 228
FauI CCCGC 2 cut(s) 191, 346
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 6 cut(s) 138, 456, 510, 549, 570, 573
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 6 cut(s) 138, 456, 510, 549, 570, 573
FspBI CTAG 1 cut(s) 426
GlaI GCGC 2 cut(s) 373, 508
GluI GCNGC 6 cut(s) 138, 456, 510, 549, 570, 573
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 3 cut(s) 41, 260, 332
HapII CCGG 3 cut(s) 65, 257, 482
HgaI GACGC 1 cut(s) 438
HhaI GCGC 2 cut(s) 374, 509
Hin1I GRCGYC 1 cut(s) 449
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 2 cut(s) 372, 507
HinP1I GCGC 2 cut(s) 372, 507
HincII GTYRAC 1 cut(s) 51
HindII GTYRAC 1 cut(s) 51
HinfI GANTC 2 cut(s) 205, 274
HpaII CCGG 3 cut(s) 65, 257, 482
HphI GGTGA 2 cut(s) 79, 478
Hpy166II GTNNAC 1 cut(s) 51
Hpy188I TCNGA 6 cut(s) 30, 93, 159, 186, 301, 349
Hpy188III TCNNGA 2 cut(s) 268, 538
Hpy8I GTNNAC 1 cut(s) 51
HpyAV CCTTC 3 cut(s) 88, 355, 559
HpyCH4III ACNGT 3 cut(s) 34, 48, 177
HpyCH4V TGCA 2 cut(s) 286, 512
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 179, 455
HpyF3I CTNAG 7 cut(s) 83, 348, 432, 438, 444, 486, 552
Hsp92I GRCGYC 1 cut(s) 449
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 2 cut(s) 372, 507
KroI GCCGGC 1 cut(s) 481
KroNI GCCGGC 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 3 cut(s) 88, 162, 534
LguI GCTCTTC 1 cut(s) 188
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 7 cut(s) 70, 78, 263, 270, 302, 495, 558
Lsp1109I GCAGC 6 cut(s) 124, 442, 496, 535, 556, 559
MaeI CTAG 1 cut(s) 426
MaeIII GTNAC 1 cut(s) 466
MalI GATC 3 cut(s) 90, 164, 536
MbiI CCGCTC 1 cut(s) 198
MboI GATC 3 cut(s) 88, 162, 534
MfeI CAATTG 1 cut(s) 287
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 2 cut(s) 262, 287
MlyI GAGTC 2 cut(s) 214, 268
MmeI TCCRAC 1 cut(s) 53
MroNI GCCGGC 1 cut(s) 481
MspA1I CMGCKG 1 cut(s) 137
MspI CCGG 3 cut(s) 65, 257, 482
MunI CAATTG 1 cut(s) 287
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 3 cut(s) 112, 179, 455
NaeI GCCGGC 1 cut(s) 483
NdeII GATC 3 cut(s) 88, 162, 534
NgoMIV GCCGGC 1 cut(s) 481
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 466
NspV TTCGAA 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 390
PceI AGGCCT 1 cut(s) 332
PciSI GCTCTTC 1 cut(s) 188
PdiI GCCGGC 1 cut(s) 483
PkrI GCNGC 6 cut(s) 139, 457, 511, 550, 571, 574
PleI GAGTC 2 cut(s) 213, 268
PpsI GAGTC 2 cut(s) 213, 268
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 40
PspXI VCTCGAGB 1 cut(s) 390
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 188
SatI GCNGC 6 cut(s) 138, 456, 510, 549, 570, 573
Sau3AI GATC 3 cut(s) 88, 162, 534
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 214, 268
SduI GDGCHC 1 cut(s) 545
SetI ASST 5 cut(s) 28, 84, 327, 397, 468
Sfr274I CTCGAG 1 cut(s) 390
SfuI TTCGAA 1 cut(s) 398
SlaI CTCGAG 1 cut(s) 390
SmlI CTYRAG 1 cut(s) 390
SmoI CTYRAG 1 cut(s) 390
Sse9I AATT 2 cut(s) 262, 287
SseBI AGGCCT 1 cut(s) 332
SsiI CCGC 4 cut(s) 135, 198, 248, 353
SspMI CTAG 1 cut(s) 426
StuI AGGCCT 1 cut(s) 332
StyI CCWWGG 1 cut(s) 405
TaaI ACNGT 3 cut(s) 34, 48, 177
TaqI TCGA 6 cut(s) 21, 203, 391, 398, 503, 533
TasI AATT 2 cut(s) 262, 287
TatI WGTACW 1 cut(s) 225
TscAI CASTG 1 cut(s) 180
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 6 cut(s) 137, 455, 509, 548, 569, 572
Tsp45I GTSAC 1 cut(s) 466
TspGWI ACGGA 1 cut(s) 68
TspRI CASTG 1 cut(s) 180
XhoI CTCGAG 1 cut(s) 390
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.