Rh2CG135600

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0013454
Physical Location & Seq
Forward (+)
12039655 .. 12040080
426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG135600.1

Sequence Viewer

Length: 426 bp
ATGATCAAAGAGGCACTGTTGGCTCTGAACGAGAAGAGCGGGTCGAGTCCTTACGCCATAGCCAAGTACATGGAGGAGAAGCACAAGGCAGTGCTTCCGGCCAATTTCAAGAAGACTCTGGCTCTGCAATTGAAGAACTCGGAGGCGAGAGGGAAACTGGTCAAGGTCAAGGCCTCTTACAAGTTGTCTGAGGCGGGGAAGAAGGACAAGAGCGCAAGTAAAAGAACAACTCGAGCTTCGAAGCCCAAGGAGGAGGAGGAGAAGATCAAGACTAAGACTAAGACTAAGACTAAGGTGTCTGCTGCTCCAAAGGTGACGAAGAAGAAGCCGGCTAAGAAGAATAAGAAATCGAGCGCTGCAAAGCCGAAGCAGCCCAAGTCGATCAAGAGCCCTGCTGCTAAGAAACCCAAGAAGGCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

141

Amino Acids

15.37

Weight (kDa)

10.41

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 1 - 62 4.4e-13 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 295
AccBSI CCGCTC 1 cut(s) 39
AciI CCGC 2 cut(s) 39, 194
AcoI YGGCCR 1 cut(s) 99
AfaI GTAC 1 cut(s) 68
AfeI AGCGCT 1 cut(s) 355
AgsI TTSAA 2 cut(s) 109, 133
AluBI AGCT 1 cut(s) 236
AluI AGCT 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 231
Aor51HI AGCGCT 1 cut(s) 355
AoxI GGCC 2 cut(s) 99, 171
ApeKI GCWGC 6 cut(s) 302, 356, 370, 395, 416, 419
AspLEI GCGC 2 cut(s) 215, 356
AsuHPI GGTGA 1 cut(s) 325
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 231
BanII GRGCYC 1 cut(s) 392
BbsI GAAGAC 1 cut(s) 119
BbvI GCAGC 6 cut(s) 289, 343, 382, 382, 403, 406
BclI TGATCA 1 cut(s) 3
BfoI RGCGCY 1 cut(s) 357
BisI GCNGC 6 cut(s) 303, 357, 371, 396, 417, 420
BlsI GCNGC 6 cut(s) 304, 358, 372, 397, 418, 421
BmeT110I CYCGRG 1 cut(s) 231
BpiI GAAGAC 1 cut(s) 119
Bpu14I TTCGAA 1 cut(s) 239
BsaJI CCNNGG 1 cut(s) 246
Bse118I RCCGGY 1 cut(s) 328
Bse1I ACTGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 246
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 4 cut(s) 89, 266, 269, 272
BseXI GCAGC 6 cut(s) 289, 343, 382, 382, 403, 406
BshFI GGCC 2 cut(s) 101, 173
BsiHKCI CYCGRG 1 cut(s) 231
BsiSI CCGG 2 cut(s) 98, 329
BsnI GGCC 2 cut(s) 101, 173
BsoBI CYCGRG 1 cut(s) 231
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 392
Bsp143I GATC 3 cut(s) 3, 264, 381
BspACI CCGC 2 cut(s) 39, 194
BspANI GGCC 2 cut(s) 101, 173
BspCNI CTCAG 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 239
BsrBI CCGCTC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 328
BsrI ACTGG 1 cut(s) 162
BssAI RCCGGY 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 3 cut(s) 3, 264, 381
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 29
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 330
BstDEI CTNAG 7 cut(s) 189, 273, 279, 285, 291, 333, 399
BstH2I RGCGCY 1 cut(s) 357
BstHHI GCGC 2 cut(s) 215, 356
BstKTI GATC 3 cut(s) 6, 267, 384
BstMBI GATC 3 cut(s) 3, 264, 381
BstMWI GCNNNNNNNGC 2 cut(s) 20, 370
BstV1I GCAGC 6 cut(s) 289, 343, 382, 382, 403, 406
BstV2I GAAGAC 1 cut(s) 119
BstXI CCANNNNNNTGG 1 cut(s) 70
BsuRI GGCC 2 cut(s) 101, 173
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 14, 96
Cac8I GCNNGC 1 cut(s) 330
CfoI GCGC 2 cut(s) 215, 356
Cfr10I RCCGGY 1 cut(s) 328
Csp6I GTAC 1 cut(s) 67
CviAII CATG 1 cut(s) 70
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 7 cut(s) 189, 273, 279, 285, 291, 333, 399
DpnI GATC 3 cut(s) 5, 266, 383
DpnII GATC 3 cut(s) 3, 264, 381
DrdI GACNNNNNNGTC 1 cut(s) 295
DseDI GACNNNNNNGTC 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 29
EarI CTCTTC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 246
Eco147I AGGCCT 1 cut(s) 173
Eco24I GRGCYC 1 cut(s) 392
Eco47III AGCGCT 1 cut(s) 355
Eco88I CYCGRG 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 392
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 73
FaiI YATR 2 cut(s) 59, 71
FatI CATG 1 cut(s) 69
FauI CCCGC 2 cut(s) 32, 187
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 6 cut(s) 303, 357, 371, 396, 417, 420
FriOI GRGCYC 1 cut(s) 392
Fsp4HI GCNGC 6 cut(s) 303, 357, 371, 396, 417, 420
GlaI GCGC 2 cut(s) 214, 355
GluI GCNGC 6 cut(s) 303, 357, 371, 396, 417, 420
HaeII RGCGCY 1 cut(s) 357
HaeIII GGCC 2 cut(s) 101, 173
HapII CCGG 2 cut(s) 98, 329
HhaI GCGC 2 cut(s) 215, 356
Hin1II CATG 1 cut(s) 73
Hin6I GCGC 2 cut(s) 213, 354
HinP1I GCGC 2 cut(s) 213, 354
HinfI GANTC 2 cut(s) 46, 115
HpaII CCGG 2 cut(s) 98, 329
HphI GGTGA 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 27, 142, 190
Hpy188III TCNNGA 3 cut(s) 109, 268, 385
HpyAV CCTTC 2 cut(s) 196, 406
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 127, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 370
HpyF3I CTNAG 7 cut(s) 189, 273, 279, 285, 291, 333, 399
Hsp92II CATG 1 cut(s) 73
HspAI GCGC 2 cut(s) 213, 354
KroI GCCGGC 1 cut(s) 328
KroNI GCCGGC 1 cut(s) 330
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 264, 381
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 5 cut(s) 104, 111, 143, 342, 405
Lsp1109I GCAGC 6 cut(s) 289, 343, 382, 382, 403, 406
MaeIII GTNAC 1 cut(s) 313
MalI GATC 3 cut(s) 5, 266, 383
MbiI CCGCTC 1 cut(s) 39
MboI GATC 3 cut(s) 3, 264, 381
MboII GAAGA 8 cut(s) 46, 124, 145, 211, 274, 331, 334, 349
MfeI CAATTG 1 cut(s) 128
MhlI GDGCHC 1 cut(s) 392
MluCI AATT 2 cut(s) 103, 128
MlyI GAGTC 2 cut(s) 55, 109
MnlI CCTC 9 cut(s) 4, 67, 136, 143, 184, 184, 244, 247, 250
MroNI GCCGGC 1 cut(s) 328
MspI CCGG 2 cut(s) 98, 329
MunI CAATTG 1 cut(s) 128
MwoI GCNNNNNNNGC 2 cut(s) 20, 370
NaeI GCCGGC 1 cut(s) 330
NdeII GATC 3 cut(s) 3, 264, 381
NgoMIV GCCGGC 1 cut(s) 328
NlaIII CATG 1 cut(s) 73
NmuCI GTSAC 1 cut(s) 313
NspV TTCGAA 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 231
PceI AGGCCT 1 cut(s) 173
PciSI GCTCTTC 1 cut(s) 29
PdiI GCCGGC 1 cut(s) 330
PkrI GCNGC 6 cut(s) 304, 358, 372, 397, 418, 421
PleI GAGTC 2 cut(s) 54, 109
PpsI GAGTC 2 cut(s) 54, 109
PspXI VCTCGAGB 1 cut(s) 231
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 29
SatI GCNGC 6 cut(s) 303, 357, 371, 396, 417, 420
Sau3AI GATC 3 cut(s) 3, 264, 381
SchI GAGTC 2 cut(s) 55, 109
SduI GDGCHC 1 cut(s) 392
SetI ASST 4 cut(s) 168, 238, 297, 315
Sfr274I CTCGAG 1 cut(s) 231
SfuI TTCGAA 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 2 cut(s) 103, 128
SseBI AGGCCT 1 cut(s) 173
SsiI CCGC 2 cut(s) 39, 194
StuI AGGCCT 1 cut(s) 173
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 18
TaqI TCGA 5 cut(s) 44, 232, 239, 350, 380
TasI AATT 2 cut(s) 103, 128
TatI WGTACW 1 cut(s) 66
TscAI CASTG 2 cut(s) 21, 96
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 6 cut(s) 302, 356, 370, 395, 416, 419
Tsp45I GTSAC 1 cut(s) 313
TspRI CASTG 2 cut(s) 21, 96
XhoI CTCGAG 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.