MD02G1134400.v1.1

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0013454
Physical Location & Seq
Forward (+)
10887602 .. 10888589
988 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1134400.v1.1.491

Sequence Viewer

Length: 573 bp
ATGTCAGCCACCGAAGAAGTTCAAGTTCCTGCCGTCATGGACCCGCCGCCAACGGAGGCTGCAGCGACGGAGGAGCCCAAGAAGGAAGAAAAGCCGGTTAGGCAGACGAAACCCAGGACTCCGAAAGAGAGGAAGCCACAACAGCCCAAACCCAAAACCAAAACCGCCGCTCATCCTCCCTACTTTCAGATGATCAAAGAGGCACTTTTGGCTCTGAACGAGAAGAGCGGGGCGAGTCCGTACGCCATAGCAAAGCACATGGAGGAGAAGCACAAGGCGGTGTTGCCGGCGAATTTCAGGAAGACTCTGGCTCTGCAGCTGAAGAACTCGGCGGCGAGAGGGAAGCTGATCAAGATCAGGGCCTCGTACAAGCTCTCGGAAGCGGGGCAGAAGGAGAAATCCGCACCCAAAACAGCCGCCGTTGCGAAACCAAAATCGGAGAAGAAGACCAAAACGACCTCGTCTGGTAAGAAGCCGGGAAGGAAGAACAAGAAGTCGGCCGCAGCCAAGCCGAAGCAGCCCAAGTCGATCAAGAGCTCTGCTGCTAAGAAATCTATGAAGTCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

191

Amino Acids

20.64

Weight (kDa)

10.34

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 58 - 122 1.6e-14 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 170, 228
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 1 cut(s) 292
AcuI CTGAAG 1 cut(s) 341
AfaI GTAC 2 cut(s) 242, 368
AgsI TTSAA 1 cut(s) 23
AjnI CCWGG 1 cut(s) 113
AluBI AGCT 4 cut(s) 319, 346, 373, 537
AluI AGCT 4 cut(s) 319, 346, 373, 537
Alw21I GWGCWC 1 cut(s) 539
AoxI GGCC 2 cut(s) 360, 498
ApeKI GCWGC 7 cut(s) 59, 62, 316, 503, 517, 542, 566
ApoI RAATTY 1 cut(s) 292
Asp700I GAANNNNTTC 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 40, 360
AsuC2I CCSGG 1 cut(s) 477
AvaII GGWCC 1 cut(s) 40
BanII GRGCYC 2 cut(s) 78, 539
BbsI GAAGAC 2 cut(s) 308, 452
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 7 cut(s) 46, 74, 328, 515, 529, 529, 553
BceAI ACGGC 2 cut(s) 17, 404
BciT130I CCWGG 1 cut(s) 115
BclI TGATCA 2 cut(s) 192, 348
BcnI CCSGG 1 cut(s) 477
BfmI CTRYAG 2 cut(s) 60, 314
BglI GCCNNNNNGGC 1 cut(s) 100
Bme1390I CCNGG 2 cut(s) 115, 477
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 2 cut(s) 40, 360
BmiI GGNNCC 2 cut(s) 42, 75
BmrFI CCNGG 2 cut(s) 115, 477
BpiI GAAGAC 2 cut(s) 308, 452
BpuMI CCSGG 1 cut(s) 477
BsaBI GATNNNNATC 1 cut(s) 353
BsaJI CCNNGG 1 cut(s) 113
Bse118I RCCGGY 2 cut(s) 94, 286
Bse8I GATNNNNATC 1 cut(s) 353
BseBI CCWGG 1 cut(s) 115
BseDI CCNNGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 172
BseJI GATNNNNATC 1 cut(s) 353
BseRI GAGGAG 2 cut(s) 86, 278
BseX3I CGGCCG 1 cut(s) 498
BseXI GCAGC 7 cut(s) 46, 74, 328, 515, 529, 529, 553
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 2 cut(s) 362, 500
BsiEI CGRYCG 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 3 cut(s) 95, 287, 476
BsiWI CGTACG 1 cut(s) 240
BsnI GGCC 2 cut(s) 362, 500
Bsp1286I GDGCHC 2 cut(s) 78, 539
Bsp143I GATC 4 cut(s) 192, 348, 354, 528
BspANI GGCC 2 cut(s) 362, 500
BspLI GGNNCC 2 cut(s) 42, 75
BspMAI CTGCAG 2 cut(s) 64, 318
BspQI GCTCTTC 1 cut(s) 218
BsrBI CCGCTC 2 cut(s) 170, 228
BsrFI RCCGGY 2 cut(s) 94, 286
BssAI RCCGGY 2 cut(s) 94, 286
BssECI CCNNGG 1 cut(s) 113
BssMI GATC 4 cut(s) 192, 348, 354, 528
Bst2UI CCWGG 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 546
BstF5I GGATG 1 cut(s) 172
BstKTI GATC 4 cut(s) 195, 351, 357, 531
BstMBI GATC 4 cut(s) 192, 348, 354, 528
BstMCI CGRYCG 1 cut(s) 501
BstMWI GCNNNNNNNGC 5 cut(s) 100, 142, 209, 422, 517
BstNI CCWGG 1 cut(s) 115
BstSCI CCNGG 2 cut(s) 113, 475
BstSFI CTRYAG 2 cut(s) 60, 314
BstV1I GCAGC 7 cut(s) 46, 74, 328, 515, 529, 529, 553
BstV2I GAAGAC 2 cut(s) 308, 452
BstZI CGGCCG 1 cut(s) 498
BsuRI GGCC 2 cut(s) 362, 500
BtsCI GGATG 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 288
Cfr10I RCCGGY 2 cut(s) 94, 286
Cfr13I GGNCC 2 cut(s) 40, 360
Csp6I GTAC 2 cut(s) 241, 367
CviAII CATG 2 cut(s) 37, 259
CviQI GTAC 2 cut(s) 241, 367
DdeI CTNAG 1 cut(s) 546
DpnI GATC 4 cut(s) 194, 350, 356, 530
DpnII GATC 4 cut(s) 192, 348, 354, 528
EaeI YGGCCR 1 cut(s) 498
EagI CGGCCG 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 537
EclXI CGGCCG 1 cut(s) 498
Eco24I GRGCYC 2 cut(s) 78, 539
Eco47I GGWCC 1 cut(s) 40
Eco52I CGGCCG 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 537
Eco57I CTGAAG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 113
EcoT38I GRGCYC 2 cut(s) 78, 539
FaeI CATG 2 cut(s) 40, 262
FaiI YATR 4 cut(s) 38, 248, 260, 557
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FatI CATG 2 cut(s) 36, 258
FauI CCCGC 3 cut(s) 51, 221, 376
FbaI TGATCA 2 cut(s) 192, 348
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 2 cut(s) 78, 539
HaeIII GGCC 2 cut(s) 362, 500
HapII CCGG 3 cut(s) 95, 287, 476
Hin1II CATG 2 cut(s) 40, 262
HinfI GANTC 3 cut(s) 118, 235, 304
HpaII CCGG 3 cut(s) 95, 287, 476
Hpy188I TCNGA 5 cut(s) 123, 189, 216, 379, 439
Hpy188III TCNNGA 3 cut(s) 298, 352, 532
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 76, 385, 474
HpyCH4V TGCA 2 cut(s) 62, 316
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 142, 209, 422, 517
HpyF3I CTNAG 1 cut(s) 546
Hsp92II CATG 2 cut(s) 40, 262
KroI GCCGGC 1 cut(s) 286
KroNI GCCGGC 1 cut(s) 288
Ksp22I TGATCA 2 cut(s) 192, 348
Kzo9I GATC 4 cut(s) 192, 348, 354, 528
LguI GCTCTTC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 7 cut(s) 46, 74, 328, 515, 529, 529, 553
MalI GATC 4 cut(s) 194, 350, 356, 530
MbiI CCGCTC 2 cut(s) 170, 228
MboI GATC 4 cut(s) 192, 348, 354, 528
MboII GAAGA 8 cut(s) 26, 98, 235, 313, 334, 454, 457, 496
MhlI GDGCHC 2 cut(s) 78, 539
MluCI AATT 1 cut(s) 292
MlyI GAGTC 3 cut(s) 112, 244, 298
MnlI CCTC 9 cut(s) 49, 64, 123, 186, 193, 256, 332, 373, 469
MroNI GCCGGC 1 cut(s) 286
MroXI GAANNNNTTC 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 319
MspI CCGG 3 cut(s) 95, 287, 476
MspR9I CCNGG 2 cut(s) 115, 477
MvaI CCWGG 1 cut(s) 115
MwoI GCNNNNNNNGC 5 cut(s) 100, 142, 209, 422, 517
NaeI GCCGGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 477
NdeII GATC 4 cut(s) 192, 348, 354, 528
NgoMIV GCCGGC 1 cut(s) 286
NlaIII CATG 2 cut(s) 40, 262
NlaIV GGNNCC 2 cut(s) 42, 75
NmeAIII GCCGAG 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 218
PdiI GCCGGC 1 cut(s) 288
PdmI GAANNNNTTC 1 cut(s) 18
Pfl23II CGTACG 1 cut(s) 240
PflFI GACNNNGTC 1 cut(s) 460
PleI GAGTC 3 cut(s) 112, 243, 298
PpsI GAGTC 3 cut(s) 112, 243, 298
Psp124BI GAGCTC 1 cut(s) 539
Psp6I CCWGG 1 cut(s) 113
PspGI CCWGG 1 cut(s) 113
PspLI CGTACG 1 cut(s) 240
PspN4I GGNNCC 2 cut(s) 42, 75
PspPI GGNCC 2 cut(s) 40, 360
PstI CTGCAG 2 cut(s) 64, 318
PsyI GACNNNGTC 1 cut(s) 460
PvuII CAGCTG 1 cut(s) 319
RsaI GTAC 2 cut(s) 242, 368
RsaNI GTAC 2 cut(s) 241, 367
SacI GAGCTC 1 cut(s) 539
SapI GCTCTTC 1 cut(s) 218
Sau3AI GATC 4 cut(s) 192, 348, 354, 528
Sau96I GGNCC 2 cut(s) 40, 360
SchI GAGTC 3 cut(s) 112, 244, 298
ScrFI CCNGG 2 cut(s) 115, 477
SduI GDGCHC 2 cut(s) 78, 539
SetI ASST 5 cut(s) 321, 348, 375, 461, 539
SfcI CTRYAG 2 cut(s) 60, 314
SinI GGWCC 1 cut(s) 40
Sse9I AATT 1 cut(s) 292
SstI GAGCTC 1 cut(s) 539
StyD4I CCNGG 2 cut(s) 113, 475
TaqI TCGA 1 cut(s) 527
TasI AATT 1 cut(s) 292
TauI GCSGC 5 cut(s) 49, 170, 335, 419, 503
TseI GCWGC 7 cut(s) 59, 62, 316, 503, 517, 542, 566
TspDTI ATGAA 1 cut(s) 572
TspGWI ACGGA 3 cut(s) 68, 83, 228
Tth111I GACNNNGTC 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 40
XapI RAATTY 1 cut(s) 292
XmnI GAANNNNTTC 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.