Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005584

Physical Location & Seq

Genomic Coordinates Reverse (-)

6588920 .. 6594244

Gene Structure 5325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0081800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1830 bp

ATGTATTCGTTGAAGGTGAATTTTTACTCATATTATGAAGTTCTATTATCAAGTGAAACAGGTCAAGTCAAAATGATTTTTAAGGGGCACTCGGATTACTTGCATTCCATAGTCGCCCGAAACTCTACAAATCAGATCATAACTGGTTCAGAGGATGGGACGGCACGTATATGGGATTGCAAAAGTGGAAAGTCAGTTCAAGTGATTGAGCCATTAAAGAATAATAAATTGAAAGGGTCGTGCGTCAGTTGCATTGCTCTTGATGCAAGTGAAAGCTGGTTGGCTTGTGGTACTGGTCGGAGTTTATCAGTTTGGAACCTTCCTGCATCTGAATGCATTTCAAGGACTTCAACTCGTGCATCTGTACAGGATGTAGTATTTGATGAAAATCAAATATTAGCAGTTGGAGCAGAGCCTCTACTTAGCCGTTTTGACATAAATGGGGTGATTCTTTCACAAATGCAATGTGCCCCTCAGTCAGCCTTTTCTGTCTCATTACACGCATCTGGGGTTACAGCAATAGGAGGTTATGGAGGAGTTGTGGATGTTATTTCCCAGTTCGGAAGCCATTTGTGCACGTTTGGCTGCAAATTCATGGCGGCACCTGAAGGTTCACAGTTTGATACGCGTCAGTTCGACACCAAGATGAATGAGTTGCTTGCAACTGATGGACAAGATTTCTTTACATCATACGATGAAGTTTACGACAGTTTTGATTCCATGGGCTTGCAAGAGAACCTGCTGAGGGGCATTTATGCTTACGGTTTTGAGAAACCCTCTGCCATTCAGCAAAGGGGAATTGTCCCCTTTATTAAGGGTCTTGATGTGATTCAGCAGGCTCAATCTGGAACTGGGAAGACAGCGACCTTCTGTTCTGGTATTCTTCAACAGCTTGACTATAGTTTGACAGACTGCCAGGGCTTGGTTCTGGCACCCACTCGAGAGCTTGCCCAACAAATAGAGAAGGTCATGAGGGCCCTTGGAGATTATCTTGGTGTTAAGGTGCATGCATGTGTTGGTGGAACTAGTGTTCGTGAAGACCAACGTATTCTGTCAAATGGAGTTCATGCTGTTGTTGGAACTCCAGGTCGTGTTTTTGATATGCTAAGAAGGCAGTCACTTCGCCCTGATCATATCAAGATGTTTGTTCTTGATGAGGCTGATGAAATGCTCTCTCGGGGTTTCAAGGACCAGATCTATGATATATTCCAGCTTCTCCCACCAAAGATTCAGGTTGGTGTGTTTTCTGCCACCATGCCACCTGAGGCCCTGGAGATCACAAGGAAGTTCATGAACAAACCTGTGAGGATTCTTGTGAAGCGTGATGAACTCACCCTGGAAGGAATTAAGCAGTTTTATGTCAATGTGGACAAGGAGGAGTGGAAGCTTGACACTTTGTGTGATCTTTATGAAACCTTGGCCATTACCCAGAGTGTGATTTTCGTGAATACTCGACGCAAGGTTGATTGGTTGACTGACAAAATGAGAAGCCGGGACCATACAGTCTCTGCAACCCATGGAGACATGGACCAGAACAACAGAGACATCATCATGAGGGAATTCCGTTCTGGGTCATCTCGTGTCTTGATCACCACCGATCTGTTGGCTCGTGGTATTGATGTACAACAAGTTTCCCTTGTTATTAACTATGATCTGCCTACCCAGCCTGAGAACTACCTCCATAGAATTGGTCGTAGTGGAAGATTTGGTAGGAAGGGAGTTGCAATCAACTTTGTTACAAAGGATGATGAGAGAATGCTGTTTGATATCCAGAAGTTCTACAATGTGGTAGTAGAGGAGCTGCCTTCAAATGTTGCTGATCTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009888 GO:0009889 GO:0009987 GO:0010087 GO:0010089 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043565 GO:0044087 GO:0044089 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

609

Amino Acids

67.99

Weight (kDa)

5.7

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	15 - 121	1e-07	Prp19 WD40 domain
Beta-prop_WDR5	PF25175	17 - 130	1.7e-08	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	17 - 137	1.7e-08	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	22 - 131	5.9e-07	CDC20/Fizzy WD40 domain
Beta-prop_THOC3	PF25174	23 - 135	3.5e-08	THOC3 beta-propeller domain
DEAD	PF00270	261 - 423	8.9e-43	DEAD/DEAH box helicase
ResIII	PF04851	279 - 419	2.9e-06	Type III restriction enzyme, res subunit
Helicase_C	PF00271	462 - 570	1.6e-31	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18060 AT2G18060 AT2G18060 AT4G36160 AT4G36160 AT4G36160 AT5G66300
fragaria_vesca	FvH4_1g12050 FvH4_1g12050
malus_domestica	MD02G1134500.v1.1 MD15G1247800.v1.1
prunus_persica	Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1
pyrus_communis	pycom02g10610 pycom15g21760
rosa_chinensis	RchiOBHm_Chr2g0099671
rosa_laevigata	RLG00000016903
rosa_multiflora	Rmu_sc0004019.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142850
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131500 Rh2BG134800 Rh2CG135700 Rh2DG136200
rosa_wichuraiana	Rw2G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1502
Acc36I	ACCTGC	1 cut(s)	747
AccB1I	GGYRCC	2 cut(s)	601, 931
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccII	CGCG	1 cut(s)	628
AciI	CCGC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	1419
AcsI	RAATTY	3 cut(s)	19, 590, 1559
AcuI	CTGAAG	1 cut(s)	627
AdeI	CACNNNGTG	1 cut(s)	1398
AfaI	GTAC	3 cut(s)	292, 366, 1623
AfiI	CCNNNNNNNGG	2 cut(s)	745, 922
AflIII	ACRYGT	1 cut(s)	626
AgsI	TTSAA	8 cut(s)	13, 200, 232, 342, 351, 887, 1186, 1809
AhlI	ACTAGT	1 cut(s)	1025
AjnI	CCWGG	4 cut(s)	915, 1084, 1269, 1335
AloI	GAACNNNNNNTCC	4 cut(s)	180, 212, 1014, 1046
AluBI	AGCT	6 cut(s)	276, 892, 946, 1213, 1387, 1801
AluI	AGCT	6 cut(s)	276, 892, 946, 1213, 1387, 1801
Alw21I	GWGCWC	1 cut(s)	578
Alw26I	GTCTC	4 cut(s)	496, 1510, 1515, 1536
Alw44I	GTGCAC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	1508
Ama87I	CYCGRG	2 cut(s)	939, 1176
AoxI	GGCC	3 cut(s)	975, 1266, 1419
ApaI	GGGCCC	1 cut(s)	979
ApaLI	GTGCAC	1 cut(s)	574
ApeKI	GCWGC	2 cut(s)	585, 1801
ApoI	RAATTY	3 cut(s)	19, 590, 1559
AspS9I	GGNCC	6 cut(s)	975, 976, 1189, 1267, 1495, 1528
AsuC2I	CCSGG	1 cut(s)	1493
AsuHPI	GGTGA	4 cut(s)	28, 457, 1324, 1582
AvaI	CYCGRG	2 cut(s)	939, 1176
AvaII	GGWCC	3 cut(s)	1189, 1495, 1528
AxyI	CCTNAGG	1 cut(s)	1263
BaeGI	GKGCMC	4 cut(s)	90, 472, 578, 979
BalI	TGGCCA	1 cut(s)	1421
BanI	GGYRCC	2 cut(s)	601, 931
BanII	GRGCYC	1 cut(s)	979
BauI	CACGAG	3 cut(s)	354, 1578, 1608
BbsI	GAAGAC	2 cut(s)	863, 1044
Bbv12I	GWGCWC	1 cut(s)	578
BbvCI	CCTCAGC	1 cut(s)	743
BbvI	GCAGC	2 cut(s)	572, 1788
BccI	CCATC	2 cut(s)	149, 662
BceAI	ACGGC	2 cut(s)	177, 411
BcgI	CGANNNNNNTGC	2 cut(s)	1103, 1137
BciT130I	CCWGG	4 cut(s)	917, 1086, 1271, 1337
BclI	TGATCA	2 cut(s)	1129, 1587
BcnI	CCSGG	1 cut(s)	1493
BcoDI	GTCTC	4 cut(s)	496, 1510, 1515, 1536
BcuI	ACTAGT	1 cut(s)	1025
BfaI	CTAG	1 cut(s)	1026
BfmI	CTRYAG	1 cut(s)	898
BfuAI	ACCTGC	1 cut(s)	747
BglII	AGATCT	1 cut(s)	1194
BisI	GCNGC	3 cut(s)	586, 600, 1802
BlsI	GCNGC	3 cut(s)	587, 601, 1803
Bme1390I	CCNGG	5 cut(s)	917, 1086, 1271, 1337, 1493
Bme18I	GGWCC	3 cut(s)	1189, 1495, 1528
BmeT110I	CYCGRG	2 cut(s)	939, 1176
BmgT120I	GGNCC	6 cut(s)	975, 976, 1189, 1267, 1495, 1528
BmiI	GGNNCC	5 cut(s)	317, 603, 933, 977, 1496
BmrFI	CCNGG	5 cut(s)	917, 1086, 1271, 1337, 1493
BmrI	ACTGGG	2 cut(s)	550, 861
BmsI	GCATC	4 cut(s)	253, 335, 368, 512
BmuI	ACTGGG	2 cut(s)	550, 861
BpiI	GAAGAC	2 cut(s)	863, 1044
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
BpmI	CTGGAG	2 cut(s)	1068, 1292
Bpu10I	CCTNAGC	1 cut(s)	743
BpuMI	CCSGG	1 cut(s)	1493
BsaAI	YACGTR	1 cut(s)	167
BsaBI	GATNNNNATC	1 cut(s)	387
BsaJI	CCNNGG	7 cut(s)	720, 916, 979, 1269, 1335, 1416, 1516
BsaXI	ACNNNNNCTCC	2 cut(s)	525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	745, 922
Bse1I	ACTGG	4 cut(s)	148, 298, 556, 856
Bse21I	CCTNAGG	1 cut(s)	1263
Bse3DI	GCAATG	2 cut(s)	252, 470
Bse8I	GATNNNNATC	1 cut(s)	387
BseBI	CCWGG	4 cut(s)	917, 1086, 1271, 1337
BseDI	CCNNGG	7 cut(s)	720, 916, 979, 1269, 1335, 1416, 1516
BseGI	GGATG	4 cut(s)	160, 376, 550, 1750
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	2 cut(s)	745, 922
BseMI	GCAATG	2 cut(s)	252, 470
BseMII	CTCAG	4 cut(s)	488, 734, 1254, 1659
BseNI	ACTGG	4 cut(s)	148, 298, 556, 856
BseRI	GAGGAG	4 cut(s)	549, 1391, 1811, 1814
BseSI	GKGCMC	4 cut(s)	90, 472, 578, 979
BseXI	GCAGC	2 cut(s)	572, 1788
BseYI	CCCAGC	1 cut(s)	1662
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	3 cut(s)	977, 1268, 1421
BshNI	GGYRCC	2 cut(s)	601, 931
BsiHKAI	GWGCWC	1 cut(s)	578
BsiHKCI	CYCGRG	2 cut(s)	939, 1176
BsiSI	CCGG	1 cut(s)	1492
BslFI	GGGAC	3 cut(s)	172, 788, 1508
BslI	CCNNNNNNNGG	2 cut(s)	745, 922
BsmAI	GTCTC	4 cut(s)	496, 1510, 1515, 1536
BsmFI	GGGAC	3 cut(s)	172, 788, 1508
BsmI	GAATGC	3 cut(s)	103, 338, 1761
BsnI	GGCC	3 cut(s)	977, 1268, 1421
BsoBI	CYCGRG	2 cut(s)	939, 1176
Bsp120I	GGGCCC	1 cut(s)	975
Bsp1286I	GDGCHC	4 cut(s)	90, 472, 578, 979
Bsp1407I	TGTACA	2 cut(s)	364, 1621
Bsp143I	GATC	9 cut(s)	135, 1129, 1194, 1275, 1402, 1587, 1597, 1651, 1819
Bsp19I	CCATGG	2 cut(s)	720, 1516
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	3 cut(s)	977, 1268, 1421
BspCNI	CTCAG	4 cut(s)	487, 735, 1255, 1660
BspFNI	CGCG	1 cut(s)	628
BspHI	TCATGA	3 cut(s)	969, 1290, 1551
BspLI	GGNNCC	5 cut(s)	317, 603, 933, 977, 1496
BspMI	ACCTGC	1 cut(s)	747
BspT107I	GGYRCC	2 cut(s)	601, 931
BsrDI	GCAATG	2 cut(s)	252, 470
BsrGI	TGTACA	2 cut(s)	364, 1621
BsrI	ACTGG	4 cut(s)	148, 298, 556, 856
BssECI	CCNNGG	7 cut(s)	720, 916, 979, 1269, 1335, 1416, 1516
BssMI	GATC	9 cut(s)	135, 1129, 1194, 1275, 1402, 1587, 1597, 1651, 1819
BssSI	CACGAG	3 cut(s)	354, 1578, 1608
BssT1I	CCWWGG	4 cut(s)	720, 979, 1416, 1516
Bst2BI	CACGAG	3 cut(s)	354, 1578, 1608
Bst2UI	CCWGG	4 cut(s)	917, 1086, 1271, 1337
Bst4CI	ACNGT	4 cut(s)	618, 710, 764, 1504
BstAUI	TGTACA	2 cut(s)	364, 1621
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	5 cut(s)	660, 728, 837, 948, 1008
BstDEI	CTNAG	6 cut(s)	422, 474, 743, 1106, 1263, 1668
BstDSI	CCRYGG	2 cut(s)	720, 1516
BstF5I	GGATG	4 cut(s)	160, 376, 550, 1750
BstFNI	CGCG	1 cut(s)	628
BstKTI	GATC	9 cut(s)	138, 1132, 1197, 1278, 1405, 1590, 1600, 1654, 1822
BstMAI	GTCTC	4 cut(s)	496, 1510, 1515, 1536
BstMBI	GATC	9 cut(s)	135, 1129, 1194, 1275, 1402, 1587, 1597, 1651, 1819
BstMWI	GCNNNNNNNGC	7 cut(s)	249, 263, 407, 573, 582, 1111, 1663
BstNI	CCWGG	4 cut(s)	917, 1086, 1271, 1337
BstNSI	RCATGY	2 cut(s)	1010, 1014
BstSCI	CCNGG	5 cut(s)	915, 1084, 1269, 1335, 1491
BstSFI	CTRYAG	1 cut(s)	898
BstSLI	GKGCMC	4 cut(s)	90, 472, 578, 979
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	2 cut(s)	572, 1788
BstV2I	GAAGAC	2 cut(s)	863, 1044
BstX2I	RGATCY	1 cut(s)	1194
BstXI	CCANNNNNNTGG	1 cut(s)	1688
BstYI	RGATCY	1 cut(s)	1194
Bsu36I	CCTNAGG	1 cut(s)	1263
BsuRI	GGCC	3 cut(s)	977, 1268, 1421
BtgI	CCRYGG	2 cut(s)	720, 1516
BtsCI	GGATG	4 cut(s)	160, 376, 550, 1750
BveI	ACCTGC	1 cut(s)	747
Cac8I	GCNNGC	5 cut(s)	660, 728, 837, 948, 1008
CaiI	CAGNNNCTG	1 cut(s)	1508
CciI	TCATGA	3 cut(s)	969, 1290, 1551
Cfr13I	GGNCC	6 cut(s)	975, 976, 1189, 1267, 1495, 1528
CseI	GACGC	3 cut(s)	232, 617, 1464
Csp6I	GTAC	3 cut(s)	291, 365, 1622
CviQI	GTAC	3 cut(s)	291, 365, 1622
DdeI	CTNAG	6 cut(s)	422, 474, 743, 1106, 1263, 1668
DpnI	GATC	9 cut(s)	137, 1131, 1196, 1277, 1404, 1589, 1599, 1653, 1821
DpnII	GATC	9 cut(s)	135, 1129, 1194, 1275, 1402, 1587, 1597, 1651, 1819
DraIII	CACNNNGTG	1 cut(s)	1398
DrdI	GACNNNNNNGTC	1 cut(s)	1502
DseDI	GACNNNNNNGTC	1 cut(s)	1502
EaeI	YGGCCR	1 cut(s)	1419
Eco130I	CCWWGG	4 cut(s)	720, 979, 1416, 1516
Eco24I	GRGCYC	1 cut(s)	979
Eco32I	GATATC	1 cut(s)	1768
Eco47I	GGWCC	3 cut(s)	1189, 1495, 1528
Eco57I	CTGAAG	1 cut(s)	627
Eco81I	CCTNAGG	1 cut(s)	1263
Eco88I	CYCGRG	2 cut(s)	939, 1176
EcoO109I	RGGNCCY	3 cut(s)	975, 976, 1267
EcoRI	GAATTC	1 cut(s)	1559
EcoRII	CCWGG	4 cut(s)	915, 1084, 1269, 1335
EcoRV	GATATC	1 cut(s)	1768
EcoT14I	CCWWGG	4 cut(s)	720, 979, 1416, 1516
EcoT22I	ATGCAT	2 cut(s)	338, 1012
EcoT38I	GRGCYC	1 cut(s)	979
ErhI	CCWWGG	4 cut(s)	720, 979, 1416, 1516
FalI	AAGNNNNNCTT	2 cut(s)	1620, 1652
FaqI	GGGAC	3 cut(s)	172, 788, 1508
FbaI	TGATCA	2 cut(s)	1129, 1587
Fnu4HI	GCNGC	3 cut(s)	586, 600, 1802
FokI	GGATG	4 cut(s)	167, 383, 557, 1757
FriOI	GRGCYC	1 cut(s)	979
Fsp4HI	GCNGC	3 cut(s)	586, 600, 1802
FspBI	CTAG	1 cut(s)	1026
GluI	GCNGC	3 cut(s)	586, 600, 1802
GsaI	CCCAGC	1 cut(s)	1666
GsuI	CTGGAG	2 cut(s)	1068, 1292
HaeIII	GGCC	3 cut(s)	977, 1268, 1421
HapII	CCGG	1 cut(s)	1492
HgaI	GACGC	3 cut(s)	232, 617, 1464
HincII	GTYRAC	1 cut(s)	1473
HindII	GTYRAC	1 cut(s)	1473
HindIII	AAGCTT	1 cut(s)	1385
HinfI	GANTC	5 cut(s)	448, 716, 829, 1228, 1309
HpaII	CCGG	1 cut(s)	1492
HphI	GGTGA	4 cut(s)	28, 457, 1324, 1582
Hpy166II	GTNNAC	5 cut(s)	576, 614, 703, 1369, 1473
Hpy188I	TCNGA	7 cut(s)	94, 135, 151, 300, 331, 563, 1829
Hpy8I	GTNNAC	5 cut(s)	576, 614, 703, 1369, 1473
Hpy99I	CGWCG	1 cut(s)	1458
HpyAV	CCTTC	9 cut(s)	7, 329, 602, 877, 958, 1104, 1334, 1708, 1815
HpyCH4III	ACNGT	4 cut(s)	618, 710, 764, 1504
HpyCH4IV	ACGT	3 cut(s)	166, 578, 1045
HpyF10VI	GCNNNNNNNGC	7 cut(s)	249, 263, 407, 573, 582, 1111, 1663
HpyF3I	CTNAG	6 cut(s)	422, 474, 743, 1106, 1263, 1668
HpySE526I	ACGT	3 cut(s)	166, 578, 1045
Ksp22I	TGATCA	2 cut(s)	1129, 1587
Kzo9I	GATC	9 cut(s)	135, 1129, 1194, 1275, 1402, 1587, 1597, 1651, 1819
LmnI	GCTCC	2 cut(s)	407, 1798
Lsp1109I	GCAGC	2 cut(s)	572, 1788
LweI	GCATC	4 cut(s)	253, 335, 368, 512
MaeI	CTAG	1 cut(s)	1026
MaeII	ACGT	3 cut(s)	166, 578, 1045
MaeIII	GTNAC	3 cut(s)	511, 1116, 1735
MalI	GATC	9 cut(s)	137, 1131, 1196, 1277, 1404, 1589, 1599, 1653, 1821
MboI	GATC	9 cut(s)	135, 1129, 1194, 1275, 1402, 1587, 1597, 1651, 1819
MboII	GAAGA	4 cut(s)	868, 875, 1049, 1713
MflI	RGATCY	1 cut(s)	1194
MhlI	GDGCHC	4 cut(s)	90, 472, 578, 979
MlsI	TGGCCA	1 cut(s)	1421
MluCI	AATT	7 cut(s)	19, 227, 590, 798, 1344, 1559, 1686
MluI	ACGCGT	1 cut(s)	626
MluNI	TGGCCA	1 cut(s)	1421
MmeI	TCCRAC	3 cut(s)	278, 385, 1057
Mox20I	TGGCCA	1 cut(s)	1421
Mph1103I	ATGCAT	2 cut(s)	338, 1012
MscI	TGGCCA	1 cut(s)	1421
MseI	TTAA	6 cut(s)	81, 215, 813, 999, 1347, 1644
MslI	CAYNNNNRTG	5 cut(s)	169, 331, 644, 1011, 1550
Msp20I	TGGCCA	1 cut(s)	1421
MspI	CCGG	1 cut(s)	1492
MspR9I	CCNGG	5 cut(s)	917, 1086, 1271, 1337, 1493
Mva1269I	GAATGC	3 cut(s)	103, 338, 1761
MvaI	CCWGG	4 cut(s)	917, 1086, 1271, 1337
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	7 cut(s)	249, 263, 407, 573, 582, 1111, 1663
NciI	CCSGG	1 cut(s)	1493
NcoI	CCATGG	2 cut(s)	720, 1516
NdeII	GATC	9 cut(s)	135, 1129, 1194, 1275, 1402, 1587, 1597, 1651, 1819
NlaIV	GGNNCC	5 cut(s)	317, 603, 933, 977, 1496
NmuCI	GTSAC	1 cut(s)	1116
NsiI	ATGCAT	2 cut(s)	338, 1012
NspI	RCATGY	2 cut(s)	1010, 1014
PaeI	GCATGC	1 cut(s)	1010
PaeR7I	CTCGAG	1 cut(s)	939
PagI	TCATGA	3 cut(s)	969, 1290, 1551
PctI	GAATGC	3 cut(s)	103, 338, 1761
PfeI	GAWTC	5 cut(s)	448, 716, 829, 1228, 1309
PflMI	CCANNNNNTGG	1 cut(s)	922
PkrI	GCNGC	3 cut(s)	587, 601, 1803
Ppu21I	YACGTR	1 cut(s)	167
Psp6I	CCWGG	4 cut(s)	915, 1084, 1269, 1335
PspFI	CCCAGC	1 cut(s)	1662
PspGI	CCWGG	4 cut(s)	915, 1084, 1269, 1335
PspN4I	GGNNCC	5 cut(s)	317, 603, 933, 977, 1496
PspOMI	GGGCCC	1 cut(s)	975
PspPI	GGNCC	6 cut(s)	975, 976, 1189, 1267, 1495, 1528
PstNI	CAGNNNCTG	1 cut(s)	1508
PsuI	RGATCY	1 cut(s)	1194
RsaI	GTAC	3 cut(s)	292, 366, 1623
RsaNI	GTAC	3 cut(s)	291, 365, 1622
RseI	CAYNNNNRTG	5 cut(s)	169, 331, 644, 1011, 1550
SaqAI	TTAA	6 cut(s)	81, 215, 813, 999, 1347, 1644
SatI	GCNGC	3 cut(s)	586, 600, 1802
Sau3AI	GATC	9 cut(s)	135, 1129, 1194, 1275, 1402, 1587, 1597, 1651, 1819
Sau96I	GGNCC	6 cut(s)	975, 976, 1189, 1267, 1495, 1528
ScrFI	CCNGG	5 cut(s)	917, 1086, 1271, 1337, 1493
SduI	GDGCHC	4 cut(s)	90, 472, 578, 979
SfaNI	GCATC	4 cut(s)	253, 335, 368, 512
SfcI	CTRYAG	1 cut(s)	898
Sfr274I	CTCGAG	1 cut(s)	939
SinI	GGWCC	3 cut(s)	1189, 1495, 1528
SlaI	CTCGAG	1 cut(s)	939
SmiMI	CAYNNNNRTG	5 cut(s)	169, 331, 644, 1011, 1550
SmlI	CTYRAG	1 cut(s)	939
SmoI	CTYRAG	1 cut(s)	939
SpeI	ACTAGT	1 cut(s)	1025
SphI	GCATGC	1 cut(s)	1010
Sse9I	AATT	7 cut(s)	19, 227, 590, 798, 1344, 1559, 1686
SsiI	CCGC	1 cut(s)	599
SspI	AATATT	1 cut(s)	396
SspMI	CTAG	1 cut(s)	1026
StyD4I	CCNGG	5 cut(s)	915, 1084, 1269, 1335, 1491
StyI	CCWWGG	4 cut(s)	720, 979, 1416, 1516
TaaI	ACNGT	4 cut(s)	618, 710, 764, 1504
TaiI	ACGT	3 cut(s)	169, 581, 1048
TaqI	TCGA	3 cut(s)	636, 940, 1453
TasI	AATT	7 cut(s)	19, 227, 590, 798, 1344, 1559, 1686
TatI	WGTACW	2 cut(s)	364, 1621
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	5 cut(s)	448, 716, 829, 1228, 1309
Tru1I	TTAA	6 cut(s)	81, 215, 813, 999, 1347, 1644
Tru9I	TTAA	6 cut(s)	81, 215, 813, 999, 1347, 1644
TseFI	GTSAC	1 cut(s)	1116
TseI	GCWGC	2 cut(s)	585, 1801
Tsp45I	GTSAC	1 cut(s)	1116
TspGWI	ACGGA	1 cut(s)	1553
Van91I	CCANNNNNTGG	1 cut(s)	922
VneI	GTGCAC	1 cut(s)	574
VpaK11BI	GGWCC	3 cut(s)	1189, 1495, 1528
XapI	RAATTY	3 cut(s)	19, 590, 1559
XceI	RCATGY	2 cut(s)	1010, 1014
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1600
XhoI	CTCGAG	1 cut(s)	939
XspI	CTAG	1 cut(s)	1026
Zsp2I	ATGCAT	2 cut(s)	338, 1012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.