Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005584

Physical Location & Seq

Genomic Coordinates Reverse (-)

7847967 .. 7851606

Gene Structure 3640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G18060.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGAGCCAATGGAATCTTGTAGCGTTCCTCCAGGATTTAGGTTCCATCCGACGGACGAAGAGCTTGTCGGGTACTATCTAAGGAAGAAAATCGCATCGCAAAAGATTGATCTCGACGTCATCAGAGACATCGATCTCTACAGAATAGAACCATGGGATCTACAAGAACAATGTCGAATCGGTTATGAGGAACAAAATGAATGGTATTTTTTTAGTCACAAGGACAAGAAATATCCAACGGGGACAAGAACTAATAGAGCGACCATGGCTGGATTTTGGAAAGCCACGGGAAGAGACAAAGCTGTTTACGACAAAACAAAACTAATTGGTATGAGGAAAACACTTGTGTTCTACAAAGGACGTGCACCTAATGGCAAGAAATCCGATTGGATCATGCATGAGTACCGGCTCGAGTCAGATGAGAATGCACCGCCCCAGGAAGAAGGATGGGTGGTTTGTAGAGCATTCAAAAAAAGAGCTACAGGGCAAGCCAAGAACACGGAAACTTGGAGCTCAAGTTACTTTTACGATGAAGTTGCACCGAATGGAGTTAACTCGGTTATGGACCCCATTGATTACATATCTAAGCAGCAACATAACATTTTTGGGAAAGGTTTGATGTGTAAGCAAGAACTAGAAGGAATGGTTGATGGTATAAACTATATACAATCGAATCAATTCATTCAGCTCCCACAACTCCAAAGCCCTTCTCTCCCGCTGATGAAAAGACCTTCAAGCTCGATGTCCATAACATCAATGGATAACAATTACAACTATAAACTCCCATTAGCGGATGAAGAAAGCTTCGAGTCATTCATAAGAGGAGAGGATAGAAGGAAGAAGAAAAAGCAAGTAATGATGACGGGAAATTGGAGAGAGTTAGACAAGTTTGTTGCTTCACAACTTATGAGCCAAGAAGACAATGGAACTTCAAGTTTCGCAGGTCATCATATAGTTAATGAAGATAAAAACAACAATGATGTGGAGATGGATTCGTCAATGTTTTTGAGCGAAAGAGAAGAAGAAAACAGGTTCGTCAGTGAATTCTTGAGTACAAACTCGGATTATGATATTGGGATTTGCGTATTTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0008150 GO:0009611 GO:0009888 GO:0009889 GO:0009987 GO:0010033 GO:0010087 GO:0010089 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042060 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044089 GO:0044212 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048759 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901348 GO:1901363 GO:1901698 GO:1901700 GO:1903338 GO:1903340 GO:1903506 GO:1905177 GO:1990110 GO:2000112 GO:2000652 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

365

Amino Acids

42.48

Weight (kDa)

5.4

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	10 - 137	2.4e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005584)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18060 AT2G18060 AT2G18060 AT4G36160 AT4G36160 AT4G36160 AT5G66300
fragaria_vesca	FvH4_1g12050 FvH4_1g12050
malus_domestica	MD02G1134500.v1.1 MD15G1247800.v1.1
prunus_persica	Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1 Prupe.7G166300_v2.0.a1
pyrus_communis	pycom02g10610 pycom15g21760
rosa_chinensis	RchiOBHm_Chr2g0099671
rosa_laevigata	RLG00000016903
rosa_multiflora	Rmu_sc0004019.1_g000005
rosa_roxburghii	Rroxscaffold_2G00142850
rosa_rugosa	Rorug02G0081800
rosa_samantha	Rh2AG131500 Rh2BG134800 Rh2CG135700 Rh2DG136200
rosa_wichuraiana	Rw2G010200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	120
Acc36I	ACCTGC	1 cut(s)	932
AciI	CCGC	3 cut(s)	431, 716, 791
AclWI	GGATC	2 cut(s)	165, 398
AcsI	RAATTY	1 cut(s)	1043
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	3 cut(s)	74, 404, 1054
AfiI	CCNNNNNNNGG	2 cut(s)	52, 790
AgsI	TTSAA	3 cut(s)	469, 735, 933
AjiI	CACGTC	1 cut(s)	362
AjnI	CCWGG	2 cut(s)	31, 435
AluBI	AGCT	7 cut(s)	64, 302, 479, 513, 688, 738, 804
AluI	AGCT	7 cut(s)	64, 302, 479, 513, 688, 738, 804
Alw21I	GWGCWC	2 cut(s)	367, 515
Alw26I	GTCTC	2 cut(s)	120, 288
Alw44I	GTGCAC	1 cut(s)	363
AlwI	GGATC	2 cut(s)	165, 398
Ama87I	CYCGRG	1 cut(s)	410
ApaLI	GTGCAC	1 cut(s)	363
ApeKI	GCWGC	1 cut(s)	589
ApoI	RAATTY	1 cut(s)	1043
ArsI	GACNNNNNNTTYG	2 cut(s)	51, 83
Asp700I	GAANNNNTTC	1 cut(s)	677
AspS9I	GGNCC	1 cut(s)	565
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	565
BaeGI	GKGCMC	1 cut(s)	367
BanII	GRGCYC	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	924
Bbv12I	GWGCWC	2 cut(s)	367, 515
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	4 cut(s)	54, 441, 644, 982
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	2 cut(s)	33, 437
BcoDI	GTCTC	2 cut(s)	120, 288
BfaI	CTAG	1 cut(s)	635
BfmI	CTRYAG	2 cut(s)	139, 480
BfuAI	ACCTGC	1 cut(s)	932
BisI	GCNGC	1 cut(s)	590
BlsI	GCNGC	1 cut(s)	591
Bme1390I	CCNGG	2 cut(s)	33, 437
Bme18I	GGWCC	1 cut(s)	565
BmeT110I	CYCGRG	1 cut(s)	410
BmgBI	CACGTC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	565
BmiI	GGNNCC	3 cut(s)	6, 44, 567
BmrFI	CCNGG	2 cut(s)	33, 437
BmsI	GCATC	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	924
BpmI	CTGGAG	1 cut(s)	15
BpuEI	CTTGAG	2 cut(s)	499, 1069
Bsa29I	ATCGAT	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	152, 264, 285, 435
BsaXI	ACNNNNNCTCC	2 cut(s)	502, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 790
Bse118I	RCCGGY	1 cut(s)	405
BseBI	CCWGG	2 cut(s)	33, 437
BseCI	ATCGAT	1 cut(s)	132
BseDI	CCNNGG	4 cut(s)	152, 264, 285, 435
BseGI	GGATG	3 cut(s)	46, 452, 799
BseLI	CCNNNNNNNGG	2 cut(s)	52, 790
BseRI	GAGGAG	1 cut(s)	837
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	601
BshVI	ATCGAT	1 cut(s)	132
BsiHKAI	GWGCWC	2 cut(s)	367, 515
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	1 cut(s)	406
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	52, 790
BsmAI	GTCTC	2 cut(s)	120, 288
BsmFI	GGGAC	1 cut(s)	256
BsmI	GAATGC	2 cut(s)	430, 464
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	2 cut(s)	367, 515
Bsp143I	GATC	4 cut(s)	109, 133, 157, 390
Bsp19I	CCATGG	2 cut(s)	152, 264
BspACI	CCGC	3 cut(s)	431, 716, 791
BspDI	ATCGAT	1 cut(s)	132
BspLI	GGNNCC	3 cut(s)	6, 44, 567
BspMI	ACCTGC	1 cut(s)	932
BspPI	GGATC	2 cut(s)	165, 398
BspQI	GCTCTTC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	405
BssAI	RCCGGY	1 cut(s)	405
BssECI	CCNNGG	4 cut(s)	152, 264, 285, 435
BssMI	GATC	4 cut(s)	109, 133, 157, 390
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	152, 264
Bst2UI	CCWGG	2 cut(s)	33, 437
Bst6I	CTCTTC	2 cut(s)	54, 286
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	2 cut(s)	80, 585
BstDSI	CCRYGG	3 cut(s)	152, 264, 285
BstF5I	GGATG	3 cut(s)	46, 452, 799
BstKTI	GATC	4 cut(s)	112, 136, 160, 393
BstMAI	GTCTC	2 cut(s)	120, 288
BstMBI	GATC	4 cut(s)	109, 133, 157, 390
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	2 cut(s)	33, 437
BstSCI	CCNGG	2 cut(s)	31, 435
BstSFI	CTRYAG	2 cut(s)	139, 480
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	601
BstV2I	GAAGAC	1 cut(s)	924
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
Bsu15I	ATCGAT	1 cut(s)	132
BsuTUI	ATCGAT	1 cut(s)	132
BtgI	CCRYGG	3 cut(s)	152, 264, 285
BtgZI	GCGATG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	362
BtsCI	GGATG	3 cut(s)	46, 452, 799
BtsIMutI	CAGTG	1 cut(s)	1045
BveI	ACCTGC	1 cut(s)	932
Cac8I	GCNNGC	1 cut(s)	489
Cfr10I	RCCGGY	1 cut(s)	405
Cfr13I	GGNCC	1 cut(s)	565
ClaI	ATCGAT	1 cut(s)	132
Csp6I	GTAC	3 cut(s)	73, 403, 1053
CviAII	CATG	4 cut(s)	153, 265, 394, 398
CviQI	GTAC	3 cut(s)	73, 403, 1053
DdeI	CTNAG	2 cut(s)	80, 585
DpnI	GATC	4 cut(s)	111, 135, 159, 392
DpnII	GATC	4 cut(s)	109, 133, 157, 390
Eam1104I	CTCTTC	2 cut(s)	54, 286
EarI	CTCTTC	2 cut(s)	54, 286
Ecl136II	GAGCTC	1 cut(s)	513
Eco130I	CCWWGG	2 cut(s)	152, 264
Eco24I	GRGCYC	1 cut(s)	515
Eco47I	GGWCC	1 cut(s)	565
Eco53kI	GAGCTC	1 cut(s)	513
Eco88I	CYCGRG	1 cut(s)	410
EcoICRI	GAGCTC	1 cut(s)	513
EcoRI	GAATTC	1 cut(s)	1043
EcoRII	CCWGG	2 cut(s)	31, 435
EcoT14I	CCWWGG	2 cut(s)	152, 264
EcoT22I	ATGCAT	1 cut(s)	399
EcoT38I	GRGCYC	1 cut(s)	515
ErhI	CCWWGG	2 cut(s)	152, 264
FaeI	CATG	4 cut(s)	156, 268, 397, 401
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	4 cut(s)	152, 264, 393, 397
FauI	CCCGC	1 cut(s)	723
Fnu4HI	GCNGC	1 cut(s)	590
FokI	GGATG	3 cut(s)	33, 459, 806
FriOI	GRGCYC	1 cut(s)	515
Fsp4HI	GCNGC	1 cut(s)	590
FspBI	CTAG	1 cut(s)	635
GluI	GCNGC	1 cut(s)	590
GsuI	CTGGAG	1 cut(s)	15
HapII	CCGG	1 cut(s)	406
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	4 cut(s)	156, 268, 397, 401
HincII	GTYRAC	1 cut(s)	553
HindII	GTYRAC	1 cut(s)	553
HindIII	AAGCTT	1 cut(s)	802
HinfI	GANTC	6 cut(s)	14, 177, 413, 673, 809, 992
HpaI	GTTAAC	1 cut(s)	553
HpaII	CCGG	1 cut(s)	406
Hpy166II	GTNNAC	3 cut(s)	307, 365, 553
Hpy188I	TCNGA	5 cut(s)	51, 125, 385, 418, 1063
Hpy188III	TCNNGA	2 cut(s)	113, 1048
Hpy8I	GTNNAC	3 cut(s)	307, 365, 553
Hpy99I	CGWCG	2 cut(s)	55, 119
HpyAV	CCTTC	5 cut(s)	437, 632, 717, 741, 828
HpyCH4IV	ACGT	2 cut(s)	117, 361
HpyCH4V	TGCA	4 cut(s)	365, 397, 428, 539
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	2 cut(s)	80, 585
HpySE526I	ACGT	2 cut(s)	117, 361
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	4 cut(s)	156, 268, 397, 401
KspAI	GTTAAC	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	109, 133, 157, 390
LguI	GCTCTTC	1 cut(s)	54
LmnI	GCTCC	3 cut(s)	4, 510, 693
LpnPI	CCDG	9 cut(s)	18, 45, 255, 419, 422, 449, 468, 927, 1015
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	635
MaeII	ACGT	2 cut(s)	117, 361
MaeIII	GTNAC	2 cut(s)	215, 518
MalI	GATC	4 cut(s)	111, 135, 159, 392
MboI	GATC	4 cut(s)	109, 133, 157, 390
MflI	RGATCY	1 cut(s)	157
MhlI	GDGCHC	2 cut(s)	367, 515
MluCI	AATT	6 cut(s)	324, 677, 766, 868, 1043, 1093
MlyI	GAGTC	2 cut(s)	422, 818
MmeI	TCCRAC	2 cut(s)	74, 260
MnlI	CCTC	5 cut(s)	39, 181, 327, 815, 820
Mph1103I	ATGCAT	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	677
MseI	TTAA	2 cut(s)	552, 957
MspA1I	CMGCKG	1 cut(s)	718
MspI	CCGG	1 cut(s)	406
MspR9I	CCNGG	2 cut(s)	33, 437
Mva1269I	GAATGC	2 cut(s)	430, 464
MvaI	CCWGG	2 cut(s)	33, 437
MwoI	GCNNNNNNNGC	1 cut(s)	266
NcoI	CCATGG	2 cut(s)	152, 264
NdeII	GATC	4 cut(s)	109, 133, 157, 390
NlaIII	CATG	4 cut(s)	156, 268, 397, 401
NlaIV	GGNNCC	3 cut(s)	6, 44, 567
NmuCI	GTSAC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	410
PciSI	GCTCTTC	1 cut(s)	54
PctI	GAATGC	2 cut(s)	430, 464
PdmI	GAANNNNTTC	1 cut(s)	677
PfeI	GAWTC	4 cut(s)	14, 177, 673, 992
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	591
PleI	GAGTC	2 cut(s)	421, 817
PpsI	GAGTC	2 cut(s)	421, 817
Psp124BI	GAGCTC	1 cut(s)	515
Psp6I	CCWGG	2 cut(s)	31, 435
PspGI	CCWGG	2 cut(s)	31, 435
PspN4I	GGNNCC	3 cut(s)	6, 44, 567
PspPI	GGNCC	1 cut(s)	565
PspXI	VCTCGAGB	1 cut(s)	410
PsuI	RGATCY	1 cut(s)	157
RsaI	GTAC	3 cut(s)	74, 404, 1054
RsaNI	GTAC	3 cut(s)	73, 403, 1053
SacI	GAGCTC	1 cut(s)	515
SapI	GCTCTTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	552, 957
SatI	GCNGC	1 cut(s)	590
Sau3AI	GATC	4 cut(s)	109, 133, 157, 390
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	2 cut(s)	422, 818
ScrFI	CCNGG	2 cut(s)	33, 437
SduI	GDGCHC	2 cut(s)	367, 515
SfaNI	GCATC	1 cut(s)	104
SfcI	CTRYAG	2 cut(s)	139, 480
Sfr274I	CTCGAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	565
SlaI	CTCGAG	1 cut(s)	410
SmlI	CTYRAG	3 cut(s)	410, 514, 1048
SmoI	CTYRAG	3 cut(s)	410, 514, 1048
Sse9I	AATT	6 cut(s)	324, 677, 766, 868, 1043, 1093
SsiI	CCGC	3 cut(s)	431, 716, 791
SspMI	CTAG	1 cut(s)	635
SstI	GAGCTC	1 cut(s)	515
StyD4I	CCNGG	2 cut(s)	31, 435
StyI	CCWWGG	2 cut(s)	152, 264
TaiI	ACGT	2 cut(s)	120, 364
TaqI	TCGA	7 cut(s)	114, 132, 175, 411, 671, 740, 807
TasI	AATT	6 cut(s)	324, 677, 766, 868, 1043, 1093
TatI	WGTACW	1 cut(s)	1052
TfiI	GAWTC	4 cut(s)	14, 177, 673, 992
Tru1I	TTAA	2 cut(s)	552, 957
Tru9I	TTAA	2 cut(s)	552, 957
TscAI	CASTG	1 cut(s)	1045
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	7 cut(s)	213, 546, 670, 737, 805, 810, 975
TspGWI	ACGGA	2 cut(s)	68, 515
TspRI	CASTG	1 cut(s)	1045
VneI	GTGCAC	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	565
XapI	RAATTY	1 cut(s)	1043
XcmI	CCANNNNNNNNNTGG	2 cut(s)	754, 920
XhoI	CTCGAG	1 cut(s)	410
XmnI	GAANNNNTTC	1 cut(s)	677
XspI	CTAG	1 cut(s)	635
ZraI	GACGTC	1 cut(s)	118
Zsp2I	ATGCAT	1 cut(s)	399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.